Free for academic non-profit institutions. Other users need a Commercial license

Aliases for RPL17P9 Gene

Aliases for RPL17P9 Gene

  • Ribosomal Protein L17 Pseudogene 9 2 3
  • RP3-476K8.4 5
  • RPL17_1_25 3

External Ids for RPL17P9 Gene

Previous GeneCards Identifiers for RPL17P9 Gene

  • GC01M026655
  • GC01M026782

Summaries for RPL17P9 Gene

GeneCards Summary for RPL17P9 Gene

RPL17P9 (Ribosomal Protein L17 Pseudogene 9) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL17P9 Gene

Genomics for RPL17P9 Gene

Regulatory Elements for RPL17P9 Gene

Enhancers for RPL17P9 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F026618 1.9 FANTOM5 Ensembl ENCODE 30.1 -164.9 -164942 4.4 CREB3L1 FEZF1 DMAP1 YY1 ZNF416 ZNF143 ZNF548 ZNF263 SP3 TBX21 HMGN2 ACTG1P20 NPM1P39 RPL17P9 AHDC1 GPATCH3 LOC101928324 WASF2 LOC105376890 ENSG00000207302
GH01F026499 1.8 FANTOM5 Ensembl ENCODE 22.2 -45.8 -45841 3.0 HDGF ARNT CREB3L1 MLX ZFP64 ARID4B SIN3A DMAP1 ZNF2 ZNF766 HMGN2 LOC101928324 ACTG1P20 NPM1P39 RPL17P9 LIN28A ENSG00000207302 LOC105376890 DHDDS RPL39P7
GH01F026856 1.6 FANTOM5 ENCODE 22 -406.5 -406483 9.6 HDGF PKNOX1 MLX WRNIP1 ARID4B SIN3A ZNF2 YY1 ZNF143 FOS HMGN2 NPM1P39 RPL17P9 ENSG00000231344 ACTG1P20 LOC101928324 WASF2 PIGV RPS6KA1 NUDC
GH01F026691 2.7 FANTOM5 ENCODE 12.6 -241.8 -241801 12.9 MLX CREB3L1 ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 HMGN2 ACTG1P20 PIGV NPM1P39 LOC101928728 LOC101928324 ZDHHC18 LOC105376890 ENSG00000207302 GPATCH3
GH01F025995 1.2 ENCODE 22 +457.3 457307 4.4 CREB3L1 ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF416 ZNF143 ZNF548 ZNF263 HMGN2 SYF2 ENSG00000207302 RPL17P9 LOC101928324 ENSG00000261349 FAM110D ENSG00000231953 RPL39P7 PAFAH2
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RPL17P9 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPL17P9 Gene

Chromosome:
1
Start:
26,454,599 bp from pter
End:
26,455,260 bp from pter
Size:
662 bases
Orientation:
Minus strand

Genomic View for RPL17P9 Gene

Genes around RPL17P9 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL17P9 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL17P9 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL17P9 Gene

Proteins for RPL17P9 Gene

Post-translational modifications for RPL17P9 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL17P9 Gene

Domains & Families for RPL17P9 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL17P9 Gene

Function for RPL17P9 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL17P9 Gene

Localization for RPL17P9 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPL17P9 Gene

Pathways & Interactions for RPL17P9 Gene

SuperPathways for RPL17P9 Gene

No Data Available

Interacting Proteins for RPL17P9 Gene

Gene Ontology (GO) - Biological Process for RPL17P9 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL17P9 Gene

Transcripts for RPL17P9 Gene

mRNA/cDNA for RPL17P9 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPL17P9 Gene

No ASD Table

Relevant External Links for RPL17P9 Gene

GeneLoc Exon Structure for
RPL17P9
ECgene alternative splicing isoforms for
RPL17P9

Expression for RPL17P9 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPL17P9 Gene

Protein differential expression in normal tissues from HIPED for RPL17P9 Gene

This gene is overexpressed in Brain (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from MOPED for RPL17P9 Gene



Protein tissue co-expression partners for RPL17P9 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of RPL17P9 Gene:

RPL17P9
genes like me logo Genes that share expression patterns with RPL17P9: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for RPL17P9 Gene

Orthologs for RPL17P9 Gene

Evolution for RPL17P9 Gene

ENSEMBL:
Gene Tree for RPL17P9 (if available)
TreeFam:
Gene Tree for RPL17P9 (if available)

No data available for Orthologs for RPL17P9 Gene

Paralogs for RPL17P9 Gene

No data available for Paralogs for RPL17P9 Gene

Variants for RPL17P9 Gene

Relevant External Links for RPL17P9 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL17P9

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL17P9 Gene

Disorders for RPL17P9 Gene

No disorders were found for RPL17P9 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPL17P9 Gene

Publications for RPL17P9 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64

Products for RPL17P9 Gene

Sources for RPL17P9 Gene

Content
Loading form....