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Aliases for RPL17P6 Gene

Aliases for RPL17P6 Gene

  • Ribosomal Protein L17 Pseudogene 6 2 3
  • RPL17_1_64 3
  • AC113935.1 5

External Ids for RPL17P6 Gene

Previous GeneCards Identifiers for RPL17P6 Gene

  • GC01P077366
  • GC01P077596

Summaries for RPL17P6 Gene

GeneCards Summary for RPL17P6 Gene

RPL17P6 (Ribosomal Protein L17 Pseudogene 6) is a Pseudogene.

Additional gene information for RPL17P6 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL17P6 Gene

Genomics for RPL17P6 Gene

Regulatory Elements for RPL17P6 Gene

Enhancers for RPL17P6 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01H077680 1.1 ENCODE 33.4 +553.8 553824 4 HDGF PKNOX1 MLX ARNT ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 FUBP1 RPL17P6 ZZZ3 ENSG00000273338 NEXN GIPC2 AK5 DNAJB4 RN7SL370P
GH01H078002 2 FANTOM5 Ensembl ENCODE dbSUPER 10 +877.9 877855 8.6 HNRNPUL1 HDGF PKNOX1 FOXA2 ARNT ARID4B SIN3A FEZF1 ZNF2 YY1 FUBP1 DNAJB4 RPL17P6 GIPC2 NEXN ENSG00000273338 LOC100131495
GH01H077533 1.4 Ensembl ENCODE dbSUPER 10 +408.7 408654 8.4 FOXA2 ARID4B SIN3A BRCA1 RAD21 RFX5 YY1 GTF3C2 ZNF143 RCOR1 FUBP1 AK5 ZZZ3 RPL17P6 GC01P077502 GC01P077577
GH01H077975 1.4 ENCODE dbSUPER 10 +849.2 849208 5.5 HDGF PKNOX1 FOXA2 ARNT SIN3A FEZF1 DMAP1 ZNF2 YY1 SLC30A9 FUBP1 USP33 RPL17P6 GIPC2 NEXN DNAJB4 NEXN-AS1
GH01H078094 1.4 FANTOM5 Ensembl ENCODE dbSUPER 10 +967.4 967413 4.8 GTF3C2 JUND POLR3A JUN ATF7 ATF2 FUBP1 GIPC2 RPL17P6 GC01M078095 RNA5SP22 GC01M078144
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RPL17P6 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPL17P6 Gene

Genomic Locations for RPL17P6 Gene
chr1:77,129,074-77,129,703
(GRCh38/hg38)
Size:
630 bases
Orientation:
Plus strand
chr1:77,594,759-77,595,388
(GRCh37/hg19)

Genomic View for RPL17P6 Gene

Genes around RPL17P6 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL17P6 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL17P6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL17P6 Gene

Proteins for RPL17P6 Gene

Post-translational modifications for RPL17P6 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL17P6 Gene

Domains & Families for RPL17P6 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL17P6 Gene

Function for RPL17P6 Gene

Phenotypes From GWAS Catalog for RPL17P6 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL17P6 Gene

Localization for RPL17P6 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL17P6 Gene

Pathways & Interactions for RPL17P6 Gene

SuperPathways for RPL17P6 Gene

No Data Available

Interacting Proteins for RPL17P6 Gene

Gene Ontology (GO) - Biological Process for RPL17P6 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL17P6 Gene

Drugs & Compounds for RPL17P6 Gene

No Compound Related Data Available

Transcripts for RPL17P6 Gene

mRNA/cDNA for RPL17P6 Gene

(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPL17P6 Gene

No ASD Table

Relevant External Links for RPL17P6 Gene

GeneLoc Exon Structure for
RPL17P6
ECgene alternative splicing isoforms for
RPL17P6

Expression for RPL17P6 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPL17P6 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPL17P6 Gene:

RPL17P6
genes like me logo Genes that share expression patterns with RPL17P6: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL17P6 Gene

Orthologs for RPL17P6 Gene

Evolution for RPL17P6 Gene

ENSEMBL:
Gene Tree for RPL17P6 (if available)
TreeFam:
Gene Tree for RPL17P6 (if available)

No data available for Orthologs for RPL17P6 Gene

Paralogs for RPL17P6 Gene

No data available for Paralogs for RPL17P6 Gene

Variants for RPL17P6 Gene

Relevant External Links for RPL17P6 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL17P6

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL17P6 Gene

Disorders for RPL17P6 Gene

Relevant External Links for RPL17P6

Genetic Association Database (GAD)
RPL17P6

No disorders were found for RPL17P6 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL17P6 Gene

Publications for RPL17P6 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 60
  2. Genetic correlates of brain aging on MRI and cognitive test measures: a genome-wide association and linkage analysis in the Framingham Study. (PMID: 17903297) Seshadri S … Wolf PA (BMC medical genetics 2007) 45 60
  3. The sequence of the human genome. (PMID: 11181995) Venter JC … Zhu X (Science (New York, N.Y.) 2001) 3 60

Products for RPL17P6 Gene

Sources for RPL17P6 Gene

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