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Aliases for RPL17P5 Gene

Aliases for RPL17P5 Gene

  • Ribosomal Protein L17 Pseudogene 5 2 3
  • RP4-612B15.2 5
  • RPL17_2_69 3

External Ids for RPL17P5 Gene

Previous GeneCards Identifiers for RPL17P5 Gene

  • GC01P087023
  • GC01P087251

Summaries for RPL17P5 Gene

GeneCards Summary for RPL17P5 Gene

RPL17P5 (Ribosomal Protein L17 Pseudogene 5) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL17P5 Gene

Genomics for RPL17P5 Gene

Regulatory Elements for RPL17P5 Gene

Enhancers for RPL17P5 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F086780 0.8 Ensembl ENCODE 0.8 -3.8 -3765 1.1 FEZF1 ZBTB40 RAD21 POLR3A ZNF366 FOS MIXL1 ZNF654 CEBPB REST LOC105378828 RPL17P5 GC01P086761
GH01F086787 1.3 FANTOM5 Ensembl ENCODE 0.8 +3.9 3911 2.4 ELF3 HDAC1 ATF1 SIN3A RARA CREM USF2 CEBPB KAT8 MEF2D SH3GLB1 LOC105378828 RPL17P5 LOC105378831
GH01F086792 1.7 FANTOM5 Ensembl ENCODE 0.4 +8.9 8867 3.4 PKNOX1 ATF1 MLX ZFP64 ARID4B FEZF1 DMAP1 ZNF48 YY1 GATA2 LOC105378828 SH3GLB1 RPL17P5 LOC105378831
GH01F086772 1.1 FANTOM5 Ensembl ENCODE 0.4 -10.0 -9978 4.2 PKNOX1 SIN3A FEZF1 ZNF2 ZNF302 SP3 REST SSRP1 ZNF610 SMARCA4 ENSG00000267734 LOC100420166 LOC105378828 SH3GLB1 RPL17P5 GC01P086761
GH01F086778 1 Ensembl ENCODE 0.4 -5.9 -5877 2.0 FEZF1 FOS ZNF263 TSHZ1 ZNF610 ZSCAN16 GLIS1 STAT3 KDM1A SP7 LOC105378828 RPL17P5 GC01P086761
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RPL17P5 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPL17P5 Gene

Chromosome:
1
Start:
86,784,878 bp from pter
End:
86,785,502 bp from pter
Size:
625 bases
Orientation:
Plus strand

Genomic View for RPL17P5 Gene

Genes around RPL17P5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL17P5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL17P5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL17P5 Gene

Proteins for RPL17P5 Gene

Post-translational modifications for RPL17P5 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL17P5 Gene

Domains & Families for RPL17P5 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL17P5 Gene

Function for RPL17P5 Gene

Phenotypes for RPL17P5 Gene

GenomeRNAi human phenotypes for RPL17P5:
genes like me logo Genes that share phenotypes with RPL17P5: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL17P5 Gene

Localization for RPL17P5 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPL17P5 Gene

Pathways & Interactions for RPL17P5 Gene

SuperPathways for RPL17P5 Gene

No Data Available

Interacting Proteins for RPL17P5 Gene

Gene Ontology (GO) - Biological Process for RPL17P5 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL17P5 Gene

Transcripts for RPL17P5 Gene

mRNA/cDNA for RPL17P5 Gene

(1) REFSEQ mRNAs :
(3) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPL17P5 Gene

No ASD Table

Relevant External Links for RPL17P5 Gene

GeneLoc Exon Structure for
RPL17P5
ECgene alternative splicing isoforms for
RPL17P5

Expression for RPL17P5 Gene

mRNA expression in normal human tissues for RPL17P5 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPL17P5 Gene:

RPL17P5
genes like me logo Genes that share expression patterns with RPL17P5: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RPL17P5 Gene

Orthologs for RPL17P5 Gene

This gene was present in the common ancestor of chordates.

Orthologs for RPL17P5 Gene

Organism Taxonomy Gene Similarity Type Details
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.8650 34
Species where no ortholog for RPL17P5 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RPL17P5 Gene

ENSEMBL:
Gene Tree for RPL17P5 (if available)
TreeFam:
Gene Tree for RPL17P5 (if available)

Paralogs for RPL17P5 Gene

No data available for Paralogs for RPL17P5 Gene

Variants for RPL17P5 Gene

Relevant External Links for RPL17P5 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL17P5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL17P5 Gene

Disorders for RPL17P5 Gene

Relevant External Links for RPL17P5

Genetic Association Database (GAD)
RPL17P5

No disorders were found for RPL17P5 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL17P5 Gene

Publications for RPL17P5 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64

Products for RPL17P5 Gene

Sources for RPL17P5 Gene

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