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Aliases for RPL17P46 Gene

Subcategory (RNA class) for RPL17P46 Gene

antisense

Aliases for RPL17P46 Gene

  • Ribosomal Protein L17 Pseudogene 46 2 3 5
  • RPL17_27_1601 3

External Ids for RPL17P46 Gene

ORGUL Members for RPL17P46 Gene

Previous GeneCards Identifiers for RPL17P46 Gene

  • GC18U900471
  • GC18P048350

Summaries for RPL17P46 Gene

GeneCards Summary for RPL17P46 Gene

RPL17P46 (Ribosomal Protein L17 Pseudogene 46) is a Pseudogene, and is affiliated with the antisense RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL17P46 Gene

Genomics for RPL17P46 Gene

Regulatory Elements for RPL17P46 Gene

Enhancers for RPL17P46 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH18F051034 1.3 Ensembl ENCODE 11.4 +215.3 215324 9.0 ATF1 PKNOX1 MLX ZFP64 ARID4B ZNF48 YY1 ZNF766 GLIS2 ZNF548 ME2 SMAD4 RPL17P46 MRO LOC105372117 GC18M051107
GH18F050869 1.1 Ensembl ENCODE 12.1 +46.7 46705 0.9 INSM2 KLF17 FEZF1 ZEB1 ZNF121 ZNF366 SCRT2 ZNF391 FOS ZNF362 MRO RPL17P46 ME2 GC18M050796
GH18F051027 1 ENCODE 10.6 +206.4 206354 4.5 HDGF PKNOX1 ATF1 CREB3L1 ARID4B SIN3A DMAP1 ZNF48 YY1 GLIS2 ME2 MRO RPL17P46 GC18M051028 SMAD4
GH18F050790 0.8 ENCODE 12.7 -29.4 -29388 8.0 CTCF ZIC2 RAD21 YY1 ZFHX2 POLR2A SCRT2 HNF4G NFE2L2 EGR2 SMAD4 RPL17P46 MRO MAPK4 HNRNPA3P16 LOC105372116
GH18F051044 0.8 Ensembl 11.4 +221.3 221325 1.0 ZNF146 PKNOX1 INSM2 FEZF1 BCL11B ZNF121 CTBP1 ZNF366 SCRT2 KLF7 MRO RPL17P46 ME2 LOC105372117 GC18M051107
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RPL17P46 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPL17P46 Gene

Chromosome:
18
Start:
50,823,577 bp from pter
End:
50,824,120 bp from pter
Size:
544 bases
Orientation:
Plus strand

Genomic View for RPL17P46 Gene

Genes around RPL17P46 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL17P46 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL17P46 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL17P46 Gene

Proteins for RPL17P46 Gene

Post-translational modifications for RPL17P46 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL17P46 Gene

Domains & Families for RPL17P46 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL17P46 Gene

Function for RPL17P46 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL17P46 Gene

Localization for RPL17P46 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPL17P46 Gene

Pathways & Interactions for RPL17P46 Gene

SuperPathways for RPL17P46 Gene

No Data Available

Interacting Proteins for RPL17P46 Gene

Gene Ontology (GO) - Biological Process for RPL17P46 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL17P46 Gene

Transcripts for RPL17P46 Gene

mRNA/cDNA for RPL17P46 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPL17P46 Gene

No ASD Table

Relevant External Links for RPL17P46 Gene

GeneLoc Exon Structure for
RPL17P46
ECgene alternative splicing isoforms for
RPL17P46

Expression for RPL17P46 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPL17P46 Gene

mRNA differential expression in normal tissues according to GTEx for RPL17P46 Gene

This gene is overexpressed in Testis (x53.0).

NURSA nuclear receptor signaling pathways regulating expression of RPL17P46 Gene:

RPL17P46
genes like me logo Genes that share expression patterns with RPL17P46: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RPL17P46 Gene

Orthologs for RPL17P46 Gene

Evolution for RPL17P46 Gene

ENSEMBL:
Gene Tree for RPL17P46 (if available)
TreeFam:
Gene Tree for RPL17P46 (if available)

No data available for Orthologs for RPL17P46 Gene

Paralogs for RPL17P46 Gene

No data available for Paralogs for RPL17P46 Gene

Variants for RPL17P46 Gene

Relevant External Links for RPL17P46 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL17P46

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL17P46 Gene

Disorders for RPL17P46 Gene

Relevant External Links for RPL17P46

Genetic Association Database (GAD)
RPL17P46

No disorders were found for RPL17P46 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL17P46 Gene

Publications for RPL17P46 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64
  2. Genome-wide association with MRI atrophy measures as a quantitative trait locus for Alzheimer's disease. (PMID: 21116278) Furney S.J. … . (Mol. Psychiatry 2011) 46 64

Products for RPL17P46 Gene

Sources for RPL17P46 Gene

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