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Aliases for RPL17P40 Gene

Aliases for RPL17P40 Gene

  • Ribosomal Protein L17 Pseudogene 40 2 3 5
  • RPL17_15_1477 3

External Ids for RPL17P40 Gene

Previous GeneCards Identifiers for RPL17P40 Gene

  • GC16U900951

Summaries for RPL17P40 Gene

GeneCards Summary for RPL17P40 Gene

RPL17P40 (Ribosomal Protein L17 Pseudogene 40) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL17P40 Gene

Genomics for RPL17P40 Gene

Regulatory Elements for RPL17P40 Gene

Enhancers for RPL17P40 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16F015986 1 FANTOM5 Ensembl ENCODE 16.3 +106.6 106557 4.2 HDGF PKNOX1 ARNT SIN3A FEZF1 ZNF302 FOS REST KAT8 SMARCA4 ABCC1 RPL17P40 ENSG00000263029 RNU6-213P FOPNL MYH11 ENSG00000263065 NDE1 GC16P016010
GH16F015517 1.7 FANTOM5 Ensembl ENCODE 16.2 +574.3 574258 6.5 HDGF PKNOX1 ARNT ARID4B SIN3A FEZF1 ZNF2 SLC30A9 SP5 MXD4 C16orf45 KIAA0430 RPL17P40 ENSG00000270734 LOC105371095 ENSG00000263029 BFAR LOC100505915 PKD1P6 RRN3
GH16F015588 1.8 FANTOM5 Ensembl ENCODE 16.2 +503.9 503887 5.4 MLX FEZF1 DMAP1 YY1 SLC30A9 ZNF548 ZNF263 SP3 TBX21 MEF2D BFAR ENSG00000263335 LOC100505915 RRN3 PKD1P6 RPL17P40 ENSG00000270734 LOC105371095 ENSG00000263029 NDE1
GH16F016095 0.9 Ensembl ENCODE 0.8 -1.5 -1519 3.2 CTCF ATF1 PKNOX1 TAL1 ZNF384 YBX1 PLRG1 NCOR1 ZNF366 FOXK2 NPIPA5 ABCC1 RPL17P40 PIR44788
GH16F016099 0.5 ENCODE 0.8 -4.6 -4556 0.7 ZNF766 RFX1 ZNF740 ZKSCAN8 BACH1 CUX1 IRF1 GTF2A2 RPL17P40 PIR44788
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RPL17P40 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPL17P40 Gene

Chromosome:
16
Start:
16,094,033 bp from pter
End:
16,095,209 bp from pter
Size:
1,177 bases
Orientation:
Minus strand

Genomic View for RPL17P40 Gene

Genes around RPL17P40 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL17P40 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL17P40 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL17P40 Gene

Proteins for RPL17P40 Gene

Post-translational modifications for RPL17P40 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL17P40 Gene

Domains & Families for RPL17P40 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL17P40 Gene

Function for RPL17P40 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL17P40 Gene

Localization for RPL17P40 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPL17P40 Gene

Pathways & Interactions for RPL17P40 Gene

SuperPathways for RPL17P40 Gene

No Data Available

Interacting Proteins for RPL17P40 Gene

Gene Ontology (GO) - Biological Process for RPL17P40 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL17P40 Gene

Transcripts for RPL17P40 Gene

mRNA/cDNA for RPL17P40 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPL17P40 Gene

No ASD Table

Relevant External Links for RPL17P40 Gene

GeneLoc Exon Structure for
RPL17P40
ECgene alternative splicing isoforms for
RPL17P40

Expression for RPL17P40 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPL17P40 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPL17P40 Gene:

RPL17P40
genes like me logo Genes that share expression patterns with RPL17P40: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RPL17P40 Gene

Orthologs for RPL17P40 Gene

Evolution for RPL17P40 Gene

ENSEMBL:
Gene Tree for RPL17P40 (if available)
TreeFam:
Gene Tree for RPL17P40 (if available)

No data available for Orthologs for RPL17P40 Gene

Paralogs for RPL17P40 Gene

No data available for Paralogs for RPL17P40 Gene

Variants for RPL17P40 Gene

Relevant External Links for RPL17P40 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL17P40

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL17P40 Gene

Disorders for RPL17P40 Gene

No disorders were found for RPL17P40 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPL17P40 Gene

Publications for RPL17P40 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64

Products for RPL17P40 Gene

Sources for RPL17P40 Gene

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