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Aliases for RPL17P40 Gene

Aliases for RPL17P40 Gene

  • Ribosomal Protein L17 Pseudogene 40 2 3
  • RPL17_15_1477 3

External Ids for RPL17P40 Gene

Previous GeneCards Identifiers for RPL17P40 Gene

  • GC16U900951

Summaries for RPL17P40 Gene

GeneCards Summary for RPL17P40 Gene

RPL17P40 (Ribosomal Protein L17 Pseudogene 40) is a Pseudogene.

Additional gene information for RPL17P40 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL17P40 Gene

Genomics for RPL17P40 Gene

Regulatory Elements for RPL17P40 Gene

Enhancers for RPL17P40 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16H016073 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +19.4 19392 4 BCOR HLF ZMYM3 MAX RAD21 ZIC2 NR2F2 ZKSCAN1 GABPA SREBF1 ABCC1 NDE1 RPL17P40 GC16P016010
GH16H016092 0.8 ENCODE dbSUPER 0.7 +1.0 974 1.9 BCOR ZFHX2 ZNF316 ZMYM3 KDM1A MAFK NOMO3 RPL17P40 GC16P016010
GH16H016083 1 ENCODE dbSUPER 0.4 +10.6 10575 0.2 HDAC1 MAX SIN3A FOSL1 GATAD1 ADNP FOS CREM HCFC1 L3MBTL2 LOC100505915 RRN3 PKD1P6 PKD1P1 RPL17P40 GC16P016010
GH16H016018 1.9 FANTOM5 Ensembl ENCODE dbSUPER 0.2 +73.2 73154 5.4 PKNOX1 FOXA2 MLX ARNT ARID4B SIN3A DMAP1 SLC30A9 FOS DEK FOPNL RNU6-213P MYH11 ABCC1 GC16P016010 RPL17P40
GH16H016088 0.5 dbSUPER 0.7 +4.3 4314 3.9 NR3C1 ZBTB40 NR2F2 ABCC1 NPIPA5 RPL17P40 GC16P016010
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RPL17P40 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPL17P40 Gene

Genomic Locations for RPL17P40 Gene
chr16:16,094,033-16,094,513
(GRCh38/hg38)
Size:
481 bases
Orientation:
Minus strand
chr16:16,187,890-16,189,066
(GRCh37/hg19)

Genomic View for RPL17P40 Gene

Genes around RPL17P40 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL17P40 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL17P40 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL17P40 Gene

Proteins for RPL17P40 Gene

Post-translational modifications for RPL17P40 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL17P40 Gene

Domains & Families for RPL17P40 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL17P40 Gene

Function for RPL17P40 Gene

Phenotypes From GWAS Catalog for RPL17P40 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL17P40 Gene

Localization for RPL17P40 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL17P40 Gene

Pathways & Interactions for RPL17P40 Gene

SuperPathways for RPL17P40 Gene

No Data Available

Interacting Proteins for RPL17P40 Gene

Gene Ontology (GO) - Biological Process for RPL17P40 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL17P40 Gene

Drugs & Compounds for RPL17P40 Gene

No Compound Related Data Available

Transcripts for RPL17P40 Gene

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPL17P40 Gene

No ASD Table

Relevant External Links for RPL17P40 Gene

GeneLoc Exon Structure for
RPL17P40
ECgene alternative splicing isoforms for
RPL17P40

No data available for mRNA/cDNA for RPL17P40 Gene

Expression for RPL17P40 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPL17P40 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPL17P40 Gene:

RPL17P40
genes like me logo Genes that share expression patterns with RPL17P40: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL17P40 Gene

Orthologs for RPL17P40 Gene

No data available for Orthologs and Evolution for RPL17P40 Gene

Paralogs for RPL17P40 Gene

No data available for Paralogs for RPL17P40 Gene

Variants for RPL17P40 Gene

Relevant External Links for RPL17P40 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL17P40

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL17P40 Gene

Disorders for RPL17P40 Gene

No disorders were found for RPL17P40 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPL17P40 Gene

Publications for RPL17P40 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 60

Products for RPL17P40 Gene

Sources for RPL17P40 Gene

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