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Aliases for RPL17P39 Gene

Aliases for RPL17P39 Gene

  • Ribosomal Protein L17 Pseudogene 39 2 3
  • RPL17_14_1450 3
  • RP11-592N21.1 5
  • HCG2004593 3

External Ids for RPL17P39 Gene

Previous GeneCards Identifiers for RPL17P39 Gene

  • GC15M069427
  • GC15M071634

Summaries for RPL17P39 Gene

Entrez Gene Summary for RPL17P39 Gene

  • Although this locus has an open reading frame that could produce a protein of the same or nearly the same size as that of the RPL17 gene, no convincing evidence of transcription exists. It is thus being annotated as a pseudogene. [provided by RefSeq, Feb 2009]

GeneCards Summary for RPL17P39 Gene

RPL17P39 (Ribosomal Protein L17 Pseudogene 39) is a Pseudogene.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL17P39 Gene

Genomics for RPL17P39 Gene

Regulatory Elements for RPL17P39 Gene

Enhancers for RPL17P39 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH15F070790 1 FANTOM5 Ensembl ENCODE 52.5 +547.9 547906 6.3 ZNF493 ZFP64 SIN3A ZNF121 KLF7 ZNF548 FOS ZNF202 SP3 JUNB RPL17P39 LARP6 RPL29P30 UACA LRRC49 THAP10 ENSG00000259744 ENSG00000259452
GH15F071082 0.5 ENCODE 44.7 +258.4 258446 2.1 ZFP64 ZNF493 ZEB1 ZNF155 ZNF121 ZNF23 ZNF138 ZNF354C KLF7 ZNF548 RPL17P39 LRRC49 CT62 LARP6 THAP10 ENSG00000260037 ENSG00000259744 LOC105370886 RPL5P3
GH15F071110 1.3 FANTOM5 Ensembl ENCODE 36.4 +227.6 227592 7.2 SIN3A FEZF1 GLI4 ZNF2 ZNF121 GLIS2 ZNF143 KLF7 ZNF202 ZNF263 RPL17P39 CT62 THSD4
GH15F072225 1.5 FANTOM5 ENCODE 24.9 -887.5 -887505 8.0 MLX YBX1 FEZF1 DMAP1 SLC30A9 ZNF416 ZNF143 ZNF548 ZNF263 SP3 ENSG00000261187 BBS4 HEXA ARIH1 LOC105370888 RPL17P39 LOC105370887 PKM ENSG00000260672 TMEM202
GH15F072116 0.5 ENCODE 24.9 -776.5 -776489 3.8 HDGF PKNOX1 WRNIP1 ARID4B SIN3A FEZF1 ZNF2 YY1 ZNF416 ZNF143 ENSG00000261187 RPL17P39 BBS4 ARIH1 LOC105370888 ENSG00000260672 HEXA MYO9A SENP8
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RPL17P39 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPL17P39 Gene

Chromosome:
15
Start:
71,341,123 bp from pter
End:
71,341,747 bp from pter
Size:
625 bases
Orientation:
Minus strand

Genomic View for RPL17P39 Gene

Genes around RPL17P39 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL17P39 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL17P39 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL17P39 Gene

Proteins for RPL17P39 Gene

Post-translational modifications for RPL17P39 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL17P39 Gene

Domains & Families for RPL17P39 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL17P39 Gene

Function for RPL17P39 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL17P39 Gene

Localization for RPL17P39 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPL17P39 Gene

Pathways & Interactions for RPL17P39 Gene

SuperPathways for RPL17P39 Gene

No Data Available

Interacting Proteins for RPL17P39 Gene

Gene Ontology (GO) - Biological Process for RPL17P39 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL17P39 Gene

Transcripts for RPL17P39 Gene

mRNA/cDNA for RPL17P39 Gene

(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPL17P39 Gene

No ASD Table

Relevant External Links for RPL17P39 Gene

GeneLoc Exon Structure for
RPL17P39
ECgene alternative splicing isoforms for
RPL17P39

Expression for RPL17P39 Gene

mRNA expression in normal human tissues for RPL17P39 Gene

Protein differential expression in normal tissues from HIPED for RPL17P39 Gene

This gene is overexpressed in Brain (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from MOPED for RPL17P39 Gene



Protein tissue co-expression partners for RPL17P39 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of RPL17P39 Gene:

RPL17P39
genes like me logo Genes that share expression patterns with RPL17P39: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for RPL17P39 Gene

Orthologs for RPL17P39 Gene

Evolution for RPL17P39 Gene

ENSEMBL:
Gene Tree for RPL17P39 (if available)
TreeFam:
Gene Tree for RPL17P39 (if available)

No data available for Orthologs for RPL17P39 Gene

Paralogs for RPL17P39 Gene

No data available for Paralogs for RPL17P39 Gene

Variants for RPL17P39 Gene

Relevant External Links for RPL17P39 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL17P39

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL17P39 Gene

Disorders for RPL17P39 Gene

No disorders were found for RPL17P39 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPL17P39 Gene

Publications for RPL17P39 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64
  2. The sequence of the human genome. (PMID: 11181995) Venter J.C. … Zhu X. (Science 2001) 3 64

Products for RPL17P39 Gene

Sources for RPL17P39 Gene

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