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Aliases for RPL17P35 Gene

Subcategory (RNA class) for RPL17P35 Gene

lncRNA

Aliases for RPL17P35 Gene

  • Ribosomal Protein L17 Pseudogene 35 2 3 5
  • RPL17_9_1049 3

External Ids for RPL17P35 Gene

ORGUL Members for RPL17P35 Gene

Previous GeneCards Identifiers for RPL17P35 Gene

  • GC10U901101
  • GC10M066381

Summaries for RPL17P35 Gene

GeneCards Summary for RPL17P35 Gene

RPL17P35 (Ribosomal Protein L17 Pseudogene 35) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for RPL17P35 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL17P35 Gene

Genomics for RPL17P35 Gene

GeneHancer (GH) Regulatory Elements for RPL17P35 Gene

Promoters and enhancers for RPL17P35 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10I064618 Enhancer 0.3 ENCODE 550.8 +1.7 1653 0.9 CTCF RPL17P35 LOC105378335 GC10M064507 LOC105378334
GH10I064616 Enhancer 0.4 ENCODE 0.8 +3.4 3424 1.6 TCF12 TEAD4 CBFA2T3 RPL17P35 LOC105378335 GC10M064507 LOC105378334
GH10I064573 Enhancer 0.7 ENCODE 0.2 +47.2 47193 0.2 ELF3 SOX13 FOXA2 MAX RAD21 GATA3 RERE HNF4G MIXL1 GATAD2A RPL17P35 GC10M064507 LOC105378334
GH10I064507 Enhancer 0.9 ENCODE 0.1 +112.9 112884 1.8 SMAD1 ATF1 ARNT NCOA2 TCF12 ZNF766 GATA2 E2F8 ATF7 NCOA1 GC10M064507 RPL17P35 LOC105378334
GH10I064520 Enhancer 0.7 ENCODE 0.1 +100.9 100853 0.1 HDAC1 LEF1 ATF1 ARNT JUN TEAD4 TAL1 CHAMP1 FOSL1 TCF12 GC10M064507 RPL17P35 LOC105378334
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RPL17P35 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPL17P35 Gene

Genomic Locations for RPL17P35 Gene
chr10:64,620,374-64,620,922
(GRCh38/hg38)
Size:
549 bases
Orientation:
Minus strand
chr10:66,380,131-66,380,679
(GRCh37/hg19)

Genomic View for RPL17P35 Gene

Genes around RPL17P35 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL17P35 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL17P35 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL17P35 Gene

Proteins for RPL17P35 Gene

Post-translational modifications for RPL17P35 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL17P35 Gene

Domains & Families for RPL17P35 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL17P35 Gene

Function for RPL17P35 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL17P35 Gene

Localization for RPL17P35 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL17P35 Gene

Pathways & Interactions for RPL17P35 Gene

SuperPathways for RPL17P35 Gene

No Data Available

Interacting Proteins for RPL17P35 Gene

Gene Ontology (GO) - Biological Process for RPL17P35 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL17P35 Gene

Drugs & Compounds for RPL17P35 Gene

No Compound Related Data Available

Transcripts for RPL17P35 Gene

mRNA/cDNA for RPL17P35 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPL17P35 Gene

No ASD Table

Relevant External Links for RPL17P35 Gene

GeneLoc Exon Structure for
RPL17P35
ECgene alternative splicing isoforms for
RPL17P35

Expression for RPL17P35 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPL17P35 Gene

mRNA differential expression in normal tissues according to GTEx for RPL17P35 Gene

This gene is overexpressed in Brain - Cerebellar Hemisphere (x12.6), Brain - Cerebellum (x10.4), Brain - Nucleus accumbens (basal ganglia) (x6.5), Brain - Spinal cord (cervical c-1) (x4.9), Brain - Frontal Cortex (BA9) (x4.8), and Brain - Cortex (x4.7).

NURSA nuclear receptor signaling pathways regulating expression of RPL17P35 Gene:

RPL17P35
genes like me logo Genes that share expression patterns with RPL17P35: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL17P35 Gene

Orthologs for RPL17P35 Gene

Evolution for RPL17P35 Gene

ENSEMBL:
Gene Tree for RPL17P35 (if available)
TreeFam:
Gene Tree for RPL17P35 (if available)

No data available for Orthologs for RPL17P35 Gene

Paralogs for RPL17P35 Gene

No data available for Paralogs for RPL17P35 Gene

Variants for RPL17P35 Gene

Additional Variant Information for RPL17P35 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL17P35

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL17P35 Gene

Disorders for RPL17P35 Gene

Additional Disease Information for RPL17P35

Genetic Association Database
(GAD)

No disorders were found for RPL17P35 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL17P35 Gene

Publications for RPL17P35 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 58
  2. Genome-wide association of lipid-lowering response to statins in combined study populations. (PMID: 20339536) Barber MJ … Krauss RM (PloS one 2010) 44 58
  3. Genome-wide association and linkage analyses of hemostatic factors and hematological phenotypes in the Framingham Heart Study. (PMID: 17903294) Yang Q … O'Donnell CJ (BMC medical genetics 2007) 44 58
  4. A genome-wide association study for blood lipid phenotypes in the Framingham Heart Study. (PMID: 17903299) Kathiresan S … Cupples LA (BMC medical genetics 2007) 44 58
  5. Genome-wide association to body mass index and waist circumference: the Framingham Heart Study 100K project. (PMID: 17903300) Fox CS … Atwood LD (BMC medical genetics 2007) 44 58

Products for RPL17P35 Gene

Sources for RPL17P35 Gene

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