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Aliases for RPL17P30 Gene

Subcategory (RNA class) for RPL17P30 Gene

lncRNA

Aliases for RPL17P30 Gene

  • Ribosomal Protein L17 Pseudogene 30 2 3
  • RP11-589C21.1 5
  • RPL17_20_898 3

External Ids for RPL17P30 Gene

ORGUL Members for RPL17P30 Gene

Previous GeneCards Identifiers for RPL17P30 Gene

  • GC08U901159
  • GC08P041959

Summaries for RPL17P30 Gene

GeneCards Summary for RPL17P30 Gene

RPL17P30 (Ribosomal Protein L17 Pseudogene 30) is a Pseudogene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL17P30 Gene

Genomics for RPL17P30 Gene

Regulatory Elements for RPL17P30 Gene

Enhancers for RPL17P30 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08F041791 1.7 FANTOM5 Ensembl ENCODE 16.2 -305.6 -305551 9.5 HDGF PKNOX1 ARNT SIN3A FEZF1 ZNF2 CBX5 FOS ZNF263 SP3 RPL17P30 ENSG00000261449 ANK1 IKBKB KAT6A NKX6-3 LOC105379392 GC08M041760
GH08F041827 1.4 Ensembl ENCODE 16.2 -272.9 -272917 2.4 HDGF ARNT CREB3L1 ARID4B SIN3A DMAP1 YBX1 ZNF2 YY1 CBX5 ENSG00000254165 RPL17P30 ENSG00000261449 IKBKB AP3M2 KAT6A ANK1 PIR35646 ENSG00000207101
GH08F042125 1 Ensembl ENCODE 0.3 +24.9 24924 0.9 ZNF133 JUN MAX ZIC2 RFX5 HIC1 PATZ1 FOS ZNF600 KLF8 KAT6A ENSG00000238966 ANK1 AP3M2 GC08M042131 RPL17P30
GH08F042123 0.9 Ensembl ENCODE 0.3 +22.7 22683 0.8 SOX13 SOX5 PKNOX1 JUND TEAD1 TEAD4 CEBPB TEAD3 KAT6A ENSG00000238966 ANK1 AP3M2 GC08M042131 RPL17P30
GH08F042084 0.4 ENCODE 0.3 -16.1 -16119 1.1 CTCF RPL17P30 KAT6A
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RPL17P30 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPL17P30 Gene

Chromosome:
8
Start:
42,101,318 bp from pter
End:
42,101,840 bp from pter
Size:
523 bases
Orientation:
Plus strand

Genomic View for RPL17P30 Gene

Genes around RPL17P30 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL17P30 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL17P30 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL17P30 Gene

Proteins for RPL17P30 Gene

Post-translational modifications for RPL17P30 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL17P30 Gene

Domains & Families for RPL17P30 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL17P30 Gene

Function for RPL17P30 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL17P30 Gene

Localization for RPL17P30 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPL17P30 Gene

Pathways & Interactions for RPL17P30 Gene

SuperPathways for RPL17P30 Gene

No Data Available

Interacting Proteins for RPL17P30 Gene

Gene Ontology (GO) - Biological Process for RPL17P30 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL17P30 Gene

Transcripts for RPL17P30 Gene

mRNA/cDNA for RPL17P30 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPL17P30 Gene

No ASD Table

Relevant External Links for RPL17P30 Gene

GeneLoc Exon Structure for
RPL17P30
ECgene alternative splicing isoforms for
RPL17P30

Expression for RPL17P30 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPL17P30 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPL17P30 Gene:

RPL17P30
genes like me logo Genes that share expression patterns with RPL17P30: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RPL17P30 Gene

Orthologs for RPL17P30 Gene

Evolution for RPL17P30 Gene

ENSEMBL:
Gene Tree for RPL17P30 (if available)
TreeFam:
Gene Tree for RPL17P30 (if available)

No data available for Orthologs for RPL17P30 Gene

Paralogs for RPL17P30 Gene

No data available for Paralogs for RPL17P30 Gene

Variants for RPL17P30 Gene

Relevant External Links for RPL17P30 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL17P30

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL17P30 Gene

Disorders for RPL17P30 Gene

No disorders were found for RPL17P30 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPL17P30 Gene

Publications for RPL17P30 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64

Products for RPL17P30 Gene

Sources for RPL17P30 Gene

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