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Aliases for RPL17P28 Gene

Subcategory (RNA class) for RPL17P28 Gene

lncRNA

Aliases for RPL17P28 Gene

  • Ribosomal Protein L17 Pseudogene 28 2 3
  • RP11-383F6.1 5
  • RPL17_7_858 3

External Ids for RPL17P28 Gene

ORGUL Members for RPL17P28 Gene

Previous GeneCards Identifiers for RPL17P28 Gene

  • GC07U902613
  • GC07M138735

Summaries for RPL17P28 Gene

GeneCards Summary for RPL17P28 Gene

RPL17P28 (Ribosomal Protein L17 Pseudogene 28) is a Pseudogene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL17P28 Gene

Genomics for RPL17P28 Gene

Regulatory Elements for RPL17P28 Gene

Enhancers for RPL17P28 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07G139053 0.9 dbSUPER 0.7 -4.3 -4294 1.1 PKNOX1 ARNT RB1 MLX ZNF133 ARID4B YBX1 ZNF2 RAD21 YY1 ZC3HAV1 RPL17P28
GH07G139043 1.5 Ensembl ENCODE dbSUPER 0.4 +5.4 5435 2.6 HDGF PKNOX1 FOXA2 ATF1 ARNT TCF12 ZNF766 GATA2 FOS JUNB KIAA1549 ZC3HAV1L RPL17P28
GH07G139047 0.7 dbSUPER 0.7 +1.8 1807 1.6 ZBTB21 BACH1 CEBPG ZNF101 FOSL1 ZNF121 ZNF316 NFE2 MAFK SCRT1 KIAA1549 ZC3HAV1L ZC3HAV1 RPL17P28
GH07G139090 1.6 Ensembl ENCODE dbSUPER 0.3 -43.9 -43937 6.6 HDGF PKNOX1 CREB3L1 ARNT WRNIP1 ZNF766 CBX5 ZNF143 KLF13 ZNF263 ZC3HAV1 TTC26 RPL17P28
GH07G139058 1.1 Ensembl ENCODE dbSUPER 0.4 -10.1 -10088 3.0 PKNOX1 HINFP JUN MAFG FEZF1 EP300 ZNF316 PBX2 MAFK EMSY ZC3HAV1L TTC26 KIAA1549 RPL17P28 ZC3HAV1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RPL17P28 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPL17P28 Gene

Chromosome:
7
Start:
139,049,456 bp from pter
End:
139,050,006 bp from pter
Size:
551 bases
Orientation:
Minus strand

Genomic View for RPL17P28 Gene

Genes around RPL17P28 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL17P28 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL17P28 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL17P28 Gene

Proteins for RPL17P28 Gene

Post-translational modifications for RPL17P28 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL17P28 Gene

Domains & Families for RPL17P28 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL17P28 Gene

Function for RPL17P28 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL17P28 Gene

Localization for RPL17P28 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPL17P28 Gene

Pathways & Interactions for RPL17P28 Gene

SuperPathways for RPL17P28 Gene

No Data Available

Interacting Proteins for RPL17P28 Gene

Gene Ontology (GO) - Biological Process for RPL17P28 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL17P28 Gene

Drugs & Compounds for RPL17P28 Gene

No Compound Related Data Available

Transcripts for RPL17P28 Gene

mRNA/cDNA for RPL17P28 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPL17P28 Gene

No ASD Table

Relevant External Links for RPL17P28 Gene

GeneLoc Exon Structure for
RPL17P28
ECgene alternative splicing isoforms for
RPL17P28

Expression for RPL17P28 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPL17P28 Gene

mRNA differential expression in normal tissues according to GTEx for RPL17P28 Gene

This gene is overexpressed in Whole Blood (x4.3).

NURSA nuclear receptor signaling pathways regulating expression of RPL17P28 Gene:

RPL17P28
genes like me logo Genes that share expression patterns with RPL17P28: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL17P28 Gene

Orthologs for RPL17P28 Gene

Evolution for RPL17P28 Gene

ENSEMBL:
Gene Tree for RPL17P28 (if available)
TreeFam:
Gene Tree for RPL17P28 (if available)

No data available for Orthologs for RPL17P28 Gene

Paralogs for RPL17P28 Gene

No data available for Paralogs for RPL17P28 Gene

Variants for RPL17P28 Gene

Relevant External Links for RPL17P28 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL17P28

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL17P28 Gene

Disorders for RPL17P28 Gene

No disorders were found for RPL17P28 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPL17P28 Gene

Publications for RPL17P28 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64

Products for RPL17P28 Gene

Sources for RPL17P28 Gene

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