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Aliases for RPL17P21 Gene

Subcategory (RNA class) for RPL17P21 Gene

lncRNA

Aliases for RPL17P21 Gene

  • Ribosomal Protein L17 Pseudogene 21 2 3
  • RPL17_12_561 3
  • AC022133.1 5

External Ids for RPL17P21 Gene

ORGUL Members for RPL17P21 Gene

Previous GeneCards Identifiers for RPL17P21 Gene

  • GC05U901114
  • GC05P052200

Summaries for RPL17P21 Gene

GeneCards Summary for RPL17P21 Gene

RPL17P21 (Ribosomal Protein L17 Pseudogene 21) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for RPL17P21 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL17P21 Gene

Genomics for RPL17P21 Gene

GeneHancer (GH) Regulatory Elements for RPL17P21 Gene

Promoters and enhancers for RPL17P21 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05I052915 Enhancer 1 Ensembl ENCODE 0.4 +11.6 11561 0.8 PKNOX1 RAD21 YY1 GTF3C2 ZNF335 ZNF366 ZNF143 ZNF654 RXRA REST LOC105378963 PELO ITGA1 ITGA2 ENSG00000249899 RPL17P21
GH05I052921 Enhancer 1 Ensembl ENCODE 0.4 +18.7 18746 1.4 PKNOX1 CLOCK FOXA2 NFIB INSM2 MZF1 RAD21 RFX5 ELK1 ZSCAN5C ITGA1 RPL17P21 ITGA2
GH05I052894 Enhancer 0.8 Ensembl ENCODE 0.4 -8.0 -8029 3.2 CTCF HLF REST ATF2 NR2F2 ZNF335 ATF7 RCOR1 CHD2 ITGA1 B3GNTL1P1 RPL17P21
GH05I052947 Enhancer 0.9 Ensembl ENCODE 0.3 +44.6 44596 1.6 ELF3 CTCF SAP130 JUN CEBPG RAD21 RFX5 POLR2A SMC3 MAFK ITGA2 RPL17P21 ENSG00000249899 ITGA1
GH05I052984 Enhancer 0.9 ENCODE dbSUPER 0.2 +80.8 80821 1.4 JUN FEZF1 BATF ZSCAN5C FOS SCRT1 ZNF10 TSHZ1 ZNF843 PRDM6 ITGA2 ENSG00000249899 RPL17P21
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RPL17P21 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPL17P21 Gene

Genomic Locations for RPL17P21 Gene
chr5:52,903,908-52,904,478
(GRCh38/hg38)
Size:
571 bases
Orientation:
Plus strand
chr5:52,199,738-52,200,308
(GRCh37/hg19)

Genomic View for RPL17P21 Gene

Genes around RPL17P21 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL17P21 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL17P21 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL17P21 Gene

Proteins for RPL17P21 Gene

Post-translational modifications for RPL17P21 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL17P21 Gene

Domains & Families for RPL17P21 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL17P21 Gene

Function for RPL17P21 Gene

Phenotypes From GWAS Catalog for RPL17P21 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL17P21 Gene

Localization for RPL17P21 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL17P21 Gene

Pathways & Interactions for RPL17P21 Gene

SuperPathways for RPL17P21 Gene

No Data Available

Interacting Proteins for RPL17P21 Gene

Gene Ontology (GO) - Biological Process for RPL17P21 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL17P21 Gene

Drugs & Compounds for RPL17P21 Gene

No Compound Related Data Available

Transcripts for RPL17P21 Gene

mRNA/cDNA for RPL17P21 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPL17P21 Gene

No ASD Table

Relevant External Links for RPL17P21 Gene

GeneLoc Exon Structure for
RPL17P21
ECgene alternative splicing isoforms for
RPL17P21

Expression for RPL17P21 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPL17P21 Gene

mRNA differential expression in normal tissues according to GTEx for RPL17P21 Gene

This gene is overexpressed in Colon - Sigmoid (x4.2).

NURSA nuclear receptor signaling pathways regulating expression of RPL17P21 Gene:

RPL17P21
genes like me logo Genes that share expression patterns with RPL17P21: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL17P21 Gene

Orthologs for RPL17P21 Gene

Evolution for RPL17P21 Gene

ENSEMBL:
Gene Tree for RPL17P21 (if available)
TreeFam:
Gene Tree for RPL17P21 (if available)

No data available for Orthologs for RPL17P21 Gene

Paralogs for RPL17P21 Gene

No data available for Paralogs for RPL17P21 Gene

Variants for RPL17P21 Gene

Additional Variant Information for RPL17P21 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL17P21

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL17P21 Gene

Disorders for RPL17P21 Gene

No disorders were found for RPL17P21 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPL17P21 Gene

Publications for RPL17P21 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 58

Products for RPL17P21 Gene

Sources for RPL17P21 Gene

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