Free for academic non-profit institutions. Other users need a Commercial license

Aliases for RPL17P16 Gene

Aliases for RPL17P16 Gene

  • Ribosomal Protein L17 Pseudogene 16 2 3
  • RP11-1029M24.1 5
  • RPL17_4_369 3

External Ids for RPL17P16 Gene

Previous GeneCards Identifiers for RPL17P16 Gene

  • GC03M048140

Summaries for RPL17P16 Gene

GeneCards Summary for RPL17P16 Gene

RPL17P16 (Ribosomal Protein L17 Pseudogene 16) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL17P16 Gene

Genomics for RPL17P16 Gene

Regulatory Elements for RPL17P16 Gene

Enhancers for RPL17P16 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03F049016 0.2 ENCODE 16.2 -899.0 -898974 6.8 PKNOX1 CREB3L1 WRNIP1 ZFP64 ARID4B SIN3A FEZF1 ZNF2 YY1 ZNF207 WDR6 AMT BSN-AS1 LOC105377080 C3orf84 RPL17P16 NDUFB1P1 PHF5EP RN7SL664P NICN1
GH03F048119 0.6 ENCODE 0.8 +1.5 1542 0.2 CTCF IKZF1 IRF1 NR2F2 RPL17P16 GC03M048100 RN7SL664P
GH03F048120 0.5 Ensembl 0.8 +1.8 1786 0.2 IKZF1 IRF1 NR2F2 RPL17P16 GC03M048100 RN7SL664P
GH03F048112 1.3 Ensembl ENCODE 0.4 +8.5 8519 1.3 HDGF PKNOX1 TBL1XR1 MTA2 CBFB EBF1 EP300 RELA FOSL1 IKZF1 ZNF589 QRICH1 BOLA2P2 RPL17P16 GC03M048100 RN7SL664P
GH03F048106 0.2 ENCODE 0.4 +13.9 13885 1.1 CEBPB ZNF589 GC03M048100 RN7SL664P RPL17P16
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RPL17P16 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPL17P16 Gene

Chromosome:
3
Start:
48,120,623 bp from pter
End:
48,121,287 bp from pter
Size:
665 bases
Orientation:
Minus strand

Genomic View for RPL17P16 Gene

Genes around RPL17P16 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL17P16 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL17P16 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL17P16 Gene

Proteins for RPL17P16 Gene

Post-translational modifications for RPL17P16 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL17P16 Gene

Domains & Families for RPL17P16 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL17P16 Gene

Function for RPL17P16 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL17P16 Gene

Localization for RPL17P16 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPL17P16 Gene

Pathways & Interactions for RPL17P16 Gene

SuperPathways for RPL17P16 Gene

No Data Available

Interacting Proteins for RPL17P16 Gene

Gene Ontology (GO) - Biological Process for RPL17P16 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL17P16 Gene

Transcripts for RPL17P16 Gene

mRNA/cDNA for RPL17P16 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPL17P16 Gene

No ASD Table

Relevant External Links for RPL17P16 Gene

GeneLoc Exon Structure for
RPL17P16
ECgene alternative splicing isoforms for
RPL17P16

Expression for RPL17P16 Gene

mRNA expression in normal human tissues for RPL17P16 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPL17P16 Gene:

RPL17P16
genes like me logo Genes that share expression patterns with RPL17P16: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RPL17P16 Gene

Orthologs for RPL17P16 Gene

Evolution for RPL17P16 Gene

ENSEMBL:
Gene Tree for RPL17P16 (if available)
TreeFam:
Gene Tree for RPL17P16 (if available)

No data available for Orthologs for RPL17P16 Gene

Paralogs for RPL17P16 Gene

No data available for Paralogs for RPL17P16 Gene

Variants for RPL17P16 Gene

Relevant External Links for RPL17P16 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL17P16

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL17P16 Gene

Disorders for RPL17P16 Gene

No disorders were found for RPL17P16 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPL17P16 Gene

Publications for RPL17P16 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64

Products for RPL17P16 Gene

Sources for RPL17P16 Gene

Content
Loading form....