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Aliases for RPL17-C18orf32 Gene

Aliases for RPL17-C18orf32 Gene

  • RPL17-C18orf32 Readthrough 2 3

External Ids for RPL17-C18orf32 Gene

Previous GeneCards Identifiers for RPL17-C18orf32 Gene

  • GC18M047009

Summaries for RPL17-C18orf32 Gene

Entrez Gene Summary for RPL17-C18orf32 Gene

  • This locus represents naturally occurring read-through transcription between the neighboring RPL17 (ribosomal protein L17) and C18orf32 (chromosome 18 open reading frame 32) genes. Alternative splicing results in multiple transcript variants. The encoded isoforms share sequence identity with the RPL17 protein, but they include frameshifted C-terminal regions derived from the downstream gene exons. [provided by RefSeq, Dec 2010]

GeneCards Summary for RPL17-C18orf32 Gene

RPL17-C18orf32 (RPL17-C18orf32 Readthrough) is a Protein Coding gene. Among its related pathways are CFTR translational fidelity (class I mutations). An important paralog of this gene is RPL17.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL17-C18orf32 Gene

Genomics for RPL17-C18orf32 Gene

Genomic Location for RPL17-C18orf32 Gene

Start:
49,481,178 bp from pter
End:
49,492,565 bp from pter
Size:
11,388 bases
Orientation:
Minus strand

Genomic View for RPL17-C18orf32 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RPL17-C18orf32 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL17-C18orf32 Gene

No data available for Regulatory Elements for RPL17-C18orf32 Gene

Proteins for RPL17-C18orf32 Gene

  • Protein details for RPL17-C18orf32 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A0A0MRF8
    Recommended name:
    Protein RPL17-C18orf32
    Protein Accession:
    A0A0A0MRF8
    Secondary Accessions:

    Protein attributes for RPL17-C18orf32 Gene

    Size:
    190 amino acids
    Molecular mass:
    22070 Da
    Quaternary structure:
    No Data Available
  • Protein details for RPL17-C18orf32 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A0A6YYL6
    Recommended name:
    Protein RPL17-C18orf32
    Protein Accession:
    A0A0A6YYL6
    Secondary Accessions:

    Protein attributes for RPL17-C18orf32 Gene

    Size:
    228 amino acids
    Molecular mass:
    26373 Da
    Quaternary structure:
    No Data Available

neXtProt entry for RPL17-C18orf32 Gene

Proteomics data for RPL17-C18orf32 Gene at MOPED

Protein Expression for RPL17-C18orf32 Gene

Post-translational modifications for RPL17-C18orf32 Gene

No Post-translational modifications

Other Protein References for RPL17-C18orf32 Gene

No data available for DME Specific Peptides for RPL17-C18orf32 Gene

Domains for RPL17-C18orf32 Gene

Protein Domains for RPL17-C18orf32 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RPL17-C18orf32: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL17-C18orf32 Gene

Function for RPL17-C18orf32 Gene

Gene Ontology (GO) - Molecular Function for RPL17-C18orf32 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003735 structural constituent of ribosome --
GO:0044822 poly(A) RNA binding --
genes like me logo Genes that share ontologies with RPL17-C18orf32: view

Animal Model Products

CRISPR Products

miRNA for RPL17-C18orf32 Gene

miRTarBase miRNAs that target RPL17-C18orf32

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for RPL17-C18orf32 Gene

Localization for RPL17-C18orf32 Gene

Gene Ontology (GO) - Cellular Components for RPL17-C18orf32 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus --
GO:0005829 cytosol --
GO:0005840 ribosome --
GO:0015934 large ribosomal subunit --
GO:0022625 cytosolic large ribosomal subunit --
genes like me logo Genes that share ontologies with RPL17-C18orf32: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from COMPARTMENTS for RPL17-C18orf32 Gene

Pathways for RPL17-C18orf32 Gene

genes like me logo Genes that share pathways with RPL17-C18orf32: view

Pathways by source for RPL17-C18orf32 Gene

1 BioSystems pathway for RPL17-C18orf32 Gene

Interacting Proteins for RPL17-C18orf32 Gene

Gene Ontology (GO) - Biological Process for RPL17-C18orf32 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay --
GO:0006412 translation --
GO:0006413 translational initiation --
GO:0006414 translational elongation --
GO:0006415 translational termination --
genes like me logo Genes that share ontologies with RPL17-C18orf32: view

Transcripts for RPL17-C18orf32 Gene

mRNA/cDNA for RPL17-C18orf32 Gene

(2) REFSEQ mRNAs :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPL17-C18orf32 Gene

No ASD Table

Relevant External Links for RPL17-C18orf32 Gene

GeneLoc Exon Structure for
RPL17-C18orf32
ECgene alternative splicing isoforms for
RPL17-C18orf32

Expression for RPL17-C18orf32 Gene

Integrated Proteomics: protein expression from MaxQB for RPL17-C18orf32 Gene

In Situ Assay Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for RPL17-C18orf32 Gene

Orthologs for RPL17-C18orf32 Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for RPL17-C18orf32 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia -- 36
  • 84 (a)
OneToMany
-- 36
  • 86 (a)
OneToMany
-- 36
  • 89 (a)
OneToMany
dog
(Canis familiaris)
Mammalia -- 36
  • 91 (a)
ManyToMany
-- 36
  • 72 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm10166 16
Gm10362 35
  • 89.22 (n)
  • 97.06 (a)
Gm6133 36
  • 81 (a)
ManyToMany
Rpl17 36
  • 92 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia -- 36
  • 92 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 92 (a)
OneToMany
rat
(Rattus norvegicus)
Mammalia LOC499522 35
  • 85.88 (n)
  • 92.05 (a)
chicken
(Gallus gallus)
Aves -- 36
  • 92 (a)
ManyToMany
-- 36
  • 92 (a)
ManyToMany
tropical clawed frog
(Silurana tropicalis)
Amphibia rpl17 35
  • 78.34 (n)
  • 92.66 (a)
zebrafish
(Danio rerio)
Actinopterygii rpl17 35
  • 77.59 (n)
  • 92.09 (a)
rpl17 36
  • 89 (a)
OneToMany
African malaria mosquito
(Anopheles gambiae)
Insecta RL17_ANOGA 35
  • 66.27 (n)
  • 72.78 (a)
fruit fly
(Drosophila melanogaster)
Insecta RpL17 35
  • 64.76 (n)
  • 69.71 (a)
RpL17 36
  • 66 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea rpl-17 35
  • 60.62 (n)
  • 67.84 (a)
rpl-17 36
  • 61 (a)
OneToMany
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes RPL17A 36
  • 52 (a)
ManyToMany
RPL17B 36
  • 52 (a)
ManyToMany
sea squirt
(Ciona savignyi)
Ascidiacea CSA.4564 36
  • 73 (a)
OneToMany
Species with no ortholog for RPL17-C18orf32:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for RPL17-C18orf32 Gene

ENSEMBL:
Gene Tree for RPL17-C18orf32 (if available)
TreeFam:
Gene Tree for RPL17-C18orf32 (if available)

Paralogs for RPL17-C18orf32 Gene

Paralogs for RPL17-C18orf32 Gene

Pseudogenes.org Pseudogenes for RPL17-C18orf32 Gene

genes like me logo Genes that share paralogs with RPL17-C18orf32: view

Variants for RPL17-C18orf32 Gene

Relevant External Links for RPL17-C18orf32 Gene

HapMap Linkage Disequilibrium report
RPL17-C18orf32

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar and Structural Variations from Database of Genomic Variants (DGV) for RPL17-C18orf32 Gene

Disorders for RPL17-C18orf32 Gene

No disorders were found for RPL17-C18orf32 Gene.

No data available for UniProtKB/Swiss-Prot for RPL17-C18orf32 Gene

Publications for RPL17-C18orf32 Gene

  1. Expression of conjoined genes: another mechanism for gene regulation in eukaryotes. (PMID: 20967262) Prakash T. … Taylor T.D. (PLoS ONE 2010) 3
  2. A proteome-wide, quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles. (PMID: 21890473) Wagner S.A. … Choudhary C. (Mol. Cell Proteomics 2011) 3
  3. Systematic and quantitative assessment of the ubiquitin-modified proteome. (PMID: 21906983) Kim W. … Gygi S.P. (Mol. Cell 2011) 3
  4. Global identification of modular cullin-RING ligase substrates. (PMID: 21963094) Emanuele M.J. … Elledge S.J. (Cell 2011) 3
  5. Methods for quantification of in vivo changes in protein ubiquitination following proteasome and deubiquitinase inhibition. (PMID: 22505724) Udeshi N.D. … Carr S.A. (Mol. Cell Proteomics 2012) 3

Products for RPL17-C18orf32 Gene

Sources for RPL17-C18orf32 Gene

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