Free for academic non-profit institutions. Other users need a Commercial license

Aliases for RPL17-C18orf32 Gene

Aliases for RPL17-C18orf32 Gene

  • RPL17-C18orf32 Readthrough 2 3 5

External Ids for RPL17-C18orf32 Gene

Previous GeneCards Identifiers for RPL17-C18orf32 Gene

  • GC18M047009

Summaries for RPL17-C18orf32 Gene

Entrez Gene Summary for RPL17-C18orf32 Gene

  • This locus represents naturally occurring read-through transcription between the neighboring RPL17 (ribosomal protein L17) and C18orf32 (chromosome 18 open reading frame 32) genes. Alternative splicing results in multiple transcript variants. The encoded isoforms share sequence identity with the RPL17 protein, but they include frameshifted C-terminal regions derived from the downstream gene exons. [provided by RefSeq, Dec 2010]

GeneCards Summary for RPL17-C18orf32 Gene

RPL17-C18orf32 (RPL17-C18orf32 Readthrough) is a Protein Coding gene. Among its related pathways are Viral mRNA Translation. Gene Ontology (GO) annotations related to this gene include structural constituent of ribosome. An important paralog of this gene is RPL17.

Additional gene information for RPL17-C18orf32 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL17-C18orf32 Gene

Genomics for RPL17-C18orf32 Gene

GeneHancer (GH) Regulatory Elements for RPL17-C18orf32 Gene

Promoters and enhancers for RPL17-C18orf32 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18I049485 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 550.8 +2.7 2699 8.4 MLX FEZF1 DMAP1 YY1 E2F8 ZNF143 SP3 NFYC ZFP41 SSRP1 C18orf32 GC18M049490 GC18M049512 GC18M049513 GC18M049514 GC18M049515 GC18M049516 GC18M049517 GC18M049518 PIR54855
GH18I049520 Enhancer 0.8 ENCODE 11.1 -28.7 -28686 0.9 ZSCAN4 INSM2 KLF17 FEZF1 ZEB1 ZNF335 GLIS2 ZNF366 ZNF416 EGR2 MBD1 LIPG RPL17-C18orf32 SNORD58A SNORD58C DYM C18orf32 LOC101928144 GC18M049549
GH18I049465 Enhancer 0.7 ENCODE 11.2 +27.1 27070 0.7 CTCF SIN3A FEZF1 ZIC2 ZNF664 ZNF335 ZNF143 ZNF600 ZNF189 ZFP37 SNORD58C RPL17-C18orf32 SNORD58A DYM PRR13P4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RPL17-C18orf32 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPL17-C18orf32 Gene

Genomic Locations for RPL17-C18orf32 Gene
chr18:49,481,178-49,492,565
(GRCh38/hg38)
Size:
11,388 bases
Orientation:
Minus strand
chr18:47,007,548-47,018,935
(GRCh37/hg19)

Genomic View for RPL17-C18orf32 Gene

Genes around RPL17-C18orf32 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL17-C18orf32 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL17-C18orf32 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL17-C18orf32 Gene

Proteins for RPL17-C18orf32 Gene

  • Protein details for RPL17-C18orf32 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A0A0MRF8
    Recommended name:
    RPL17-C18orf32 readthrough
    Protein Accession:
    A0A0A0MRF8

    Protein attributes for RPL17-C18orf32 Gene

    Size:
    190 amino acids
    Molecular mass:
    22070 Da
    Quaternary structure:
    No Data Available
  • Protein details for RPL17-C18orf32 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A0A6YYL6
    Recommended name:
    Protein RPL17-C18orf32
    Protein Accession:
    A0A0A6YYL6

    Protein attributes for RPL17-C18orf32 Gene

    Size:
    228 amino acids
    Molecular mass:
    26373 Da
    Quaternary structure:
    No Data Available

neXtProt entry for RPL17-C18orf32 Gene

Protein Expression for RPL17-C18orf32 Gene

Post-translational modifications for RPL17-C18orf32 Gene

No Post-translational modifications

Other Protein References for RPL17-C18orf32 Gene

No data available for DME Specific Peptides for RPL17-C18orf32 Gene

Domains & Families for RPL17-C18orf32 Gene

Gene Families for RPL17-C18orf32 Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for RPL17-C18orf32 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RPL17-C18orf32: view

No data available for Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL17-C18orf32 Gene

Function for RPL17-C18orf32 Gene

Phenotypes for RPL17-C18orf32 Gene

GenomeRNAi human phenotypes for RPL17-C18orf32:
genes like me logo Genes that share phenotypes with RPL17-C18orf32: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for RPL17-C18orf32 Gene

Localization for RPL17-C18orf32 Gene

Subcellular locations from the

Human Protein Atlas (HPA)
  • Cytosol (3)
  • Endoplasmic reticulum (3)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for RPL17-C18orf32 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005622 intracellular IEA --
GO:0005840 ribosome IEA --
GO:0015934 large ribosomal subunit IEA --
GO:0030529 intracellular ribonucleoprotein complex IEA --
genes like me logo Genes that share ontologies with RPL17-C18orf32: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from COMPARTMENTS for RPL17-C18orf32 Gene

Pathways & Interactions for RPL17-C18orf32 Gene

SuperPathways for RPL17-C18orf32 Gene

SuperPathway Contained pathways
1 Viral mRNA Translation
.55
genes like me logo Genes that share pathways with RPL17-C18orf32: view

Pathways by source for RPL17-C18orf32 Gene

1 KEGG pathway for RPL17-C18orf32 Gene

Interacting Proteins for RPL17-C18orf32 Gene

Gene Ontology (GO) - Biological Process for RPL17-C18orf32 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006412 translation IEA --
genes like me logo Genes that share ontologies with RPL17-C18orf32: view

No data available for SIGNOR curated interactions for RPL17-C18orf32 Gene

Drugs & Compounds for RPL17-C18orf32 Gene

No Compound Related Data Available

Transcripts for RPL17-C18orf32 Gene

mRNA/cDNA for RPL17-C18orf32 Gene

(2) REFSEQ mRNAs :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPL17-C18orf32 Gene

No ASD Table

Relevant External Links for RPL17-C18orf32 Gene

GeneLoc Exon Structure for
RPL17-C18orf32
ECgene alternative splicing isoforms for
RPL17-C18orf32

Expression for RPL17-C18orf32 Gene

Protein differential expression in normal tissues from HIPED for RPL17-C18orf32 Gene

This gene is overexpressed in Tlymphocyte (10.4).

Integrated Proteomics: protein expression in normal tissues and cell lines from MaxQB and MOPED for RPL17-C18orf32 Gene



Protein tissue co-expression partners for RPL17-C18orf32 Gene

Evidence on tissue expression from TISSUES for RPL17-C18orf32 Gene

  • Lung(4.7)
  • Nervous system(4.7)
  • Eye(4.4)
  • Skin(4.4)
  • Liver(4.3)
  • Intestine(4.1)
  • Kidney(4.1)
  • Muscle(4)
  • Pancreas(3.9)
  • Heart(3.7)
  • Stomach(3.5)
  • Blood(3.2)
  • Bone(3)
  • Spleen(2.4)
  • Thyroid gland(2.1)
  • Adrenal gland(2)
  • Lymph node(2)

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL17-C18orf32 Gene

Orthologs for RPL17-C18orf32 Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for RPL17-C18orf32 Gene

Organism Taxonomy Gene Similarity Type Details
mouse
(Mus musculus)
Mammalia Rpl17 34
  • 92 (a)
ManyToMany
Gm10362 16 33
  • 89.22 (n)
Gm6133 34
  • 81 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 34
  • 92 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia -- 34
  • 92 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia -- 34
  • 91 (a)
ManyToMany
-- 34
  • 72 (a)
ManyToMany
cow
(Bos Taurus)
Mammalia -- 34
  • 89 (a)
OneToMany
-- 34
  • 86 (a)
OneToMany
-- 34
  • 84 (a)
OneToMany
rat
(Rattus norvegicus)
Mammalia LOC499522 33
  • 85.88 (n)
chicken
(Gallus gallus)
Aves -- 34
  • 92 (a)
ManyToMany
-- 34
  • 92 (a)
ManyToMany
tropical clawed frog
(Silurana tropicalis)
Amphibia rpl17 33
  • 78.34 (n)
zebrafish
(Danio rerio)
Actinopterygii rpl17 33 34
  • 77.59 (n)
African malaria mosquito
(Anopheles gambiae)
Insecta RL17_ANOGA 33
  • 66.27 (n)
fruit fly
(Drosophila melanogaster)
Insecta RpL17 33 34
  • 64.76 (n)
worm
(Caenorhabditis elegans)
Secernentea rpl-17 33 34
  • 60.62 (n)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes RPL17A 34
  • 52 (a)
ManyToMany
RPL17B 34
  • 52 (a)
ManyToMany
sea squirt
(Ciona savignyi)
Ascidiacea CSA.4564 34
  • 73 (a)
OneToMany
Species where no ortholog for RPL17-C18orf32 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for RPL17-C18orf32 Gene

ENSEMBL:
Gene Tree for RPL17-C18orf32 (if available)
TreeFam:
Gene Tree for RPL17-C18orf32 (if available)

Paralogs for RPL17-C18orf32 Gene

Paralogs for RPL17-C18orf32 Gene

Pseudogenes.org Pseudogenes for RPL17-C18orf32 Gene

genes like me logo Genes that share paralogs with RPL17-C18orf32: view

Variants for RPL17-C18orf32 Gene

Sequence variations from dbSNP and Humsavar for RPL17-C18orf32 Gene

SNP ID Clin Chr 18 pos Variation AA Info Type
rs1000167975 -- 49,483,504(-) T/C intron_variant
rs1000261753 -- 49,488,623(-) G/A intron_variant
rs1000314483 -- 49,488,255(-) A/T intron_variant
rs1000460489 -- 49,486,700(-) T/C intron_variant
rs1000599285 -- 49,487,575(-) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for RPL17-C18orf32 Gene

Variant ID Type Subtype PubMed ID
nsv1065279 CNV gain 25217958
nsv1160523 CNV deletion 26073780
nsv2294 CNV deletion 18451855
nsv2295 CNV insertion 18451855
nsv978629 CNV duplication 23825009

Variation tolerance for RPL17-C18orf32 Gene

Residual Variation Intolerance Score: 52% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 2.18; 39.46% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for RPL17-C18orf32 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL17-C18orf32

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for RPL17-C18orf32 Gene

Disorders for RPL17-C18orf32 Gene

Additional Disease Information for RPL17-C18orf32

No disorders were found for RPL17-C18orf32 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL17-C18orf32 Gene

Publications for RPL17-C18orf32 Gene

  1. Expression of conjoined genes: another mechanism for gene regulation in eukaryotes. (PMID: 20967262) Prakash T … Taylor TD (PloS one 2010) 3 58

Products for RPL17-C18orf32 Gene

Sources for RPL17-C18orf32 Gene

Content
Loading form....