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Aliases for RPL13P5 Gene

Aliases for RPL13P5 Gene

  • Ribosomal Protein L13 Pseudogene 5 2 3
  • Ribosomal Protein L13-Like 2
  • RPL13-2 Pseudogene 3
  • RPL13_4_1199 3
  • U47924.6 5
  • RPL13-2 3
  • RRPL13L 3
  • RPL13L 3

External Ids for RPL13P5 Gene

Previous HGNC Symbols for RPL13P5 Gene

  • RPL13L

Previous GeneCards Identifiers for RPL13P5 Gene

  • GC12P006866
  • GC12P006983
  • GC12P006984
  • GC12P006990
  • GC12P007002
  • GC12P007011
  • GC12P007026
  • GC12P007049
  • GC12P007113
  • GC12P007143

Summaries for RPL13P5 Gene

GeneCards Summary for RPL13P5 Gene

RPL13P5 (Ribosomal Protein L13 Pseudogene 5) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL13P5 Gene

Genomics for RPL13P5 Gene

Regulatory Elements for RPL13P5 Gene

Enhancers for RPL13P5 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12F006923 1 FANTOM5 ENCODE 21.3 +53.8 53762 6.8 HDGF ARID4B SIN3A ZNF2 YY1 ZNF143 FOS DEK PAF1 ZNF263 LRRC23 SCARNA12 ENSG00000219410 ENSG00000247853 RPL13P5 USP5 PHB2 EMG1 SPSB2 NOP2
GH12F006880 1 ENCODE 11.1 +7.5 7483 1.6 ZFP64 ARID4B DMAP1 ZSCAN9 ZNF354C ZNF138 ZNF202 ZNF680 ZNF654 ZBTB11 ENSG00000219410 SPSB2 ENSG00000247853 C12orf57 SCARNA12 GNB3 NOP2 C1RL-AS1 PHB2 NCAPD2
GH12F007796 1.1 Ensembl ENCODE 10.7 +925.4 925449 4.6 BCOR ZNF792 ZNF781 RARA ZNF316 JUND ZBTB33 NFE2 EMSY ZBTB20 FAM66C GNB3 NECAP1 ENO2 DPPA3 ENSG00000244050 RPL13P5 DSTNP2 SLC2A3 NANOG
GH12F006459 1 Ensembl ENCODE 10.7 -411.2 -411246 6.3 HDGF PKNOX1 CREB3L1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF143 ENSG00000219410 TAPBPL MRPL51 ENSG00000247853 VAMP1 GNB3 NOP2 ENO2 C12orf57 RPL13P5
GH12F006735 1.1 Ensembl ENCODE 10.6 -137.5 -137542 1.1 CTCF INSM2 ARID4B RAD21 ZNF121 HIC1 ZNF316 SCRT2 ZNF547 SMC3 PTMS MLF2 LAG3 CD4 GPR162 P3H3 ENSG00000219410 ING4 ACRBP CHD4
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RPL13P5 on UCSC Golden Path with GeneCards custom track

Promoters for RPL13P5 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001774635 -189 2401 MLX ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF143 FOS KLF13 SP3

Genomic Location for RPL13P5 Gene

Chromosome:
12
Start:
6,873,389 bp from pter
End:
6,884,741 bp from pter
Size:
11,353 bases
Orientation:
Plus strand

Genomic View for RPL13P5 Gene

Genes around RPL13P5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL13P5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL13P5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL13P5 Gene

Proteins for RPL13P5 Gene

Post-translational modifications for RPL13P5 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL13P5 Gene

Domains & Families for RPL13P5 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL13P5 Gene

Function for RPL13P5 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL13P5 Gene

Localization for RPL13P5 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPL13P5 Gene

Pathways & Interactions for RPL13P5 Gene

SuperPathways for RPL13P5 Gene

No Data Available

Interacting Proteins for RPL13P5 Gene

Gene Ontology (GO) - Biological Process for RPL13P5 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL13P5 Gene

Transcripts for RPL13P5 Gene

mRNA/cDNA for RPL13P5 Gene

(3) Additional mRNA sequences :
(11) Selected AceView cDNA sequences:
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RPL13P5 Gene

Ribosomal protein L13 pseudogene 5:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RPL13P5 Gene

No ASD Table

Relevant External Links for RPL13P5 Gene

GeneLoc Exon Structure for
RPL13P5
ECgene alternative splicing isoforms for
RPL13P5

Expression for RPL13P5 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPL13P5 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPL13P5 Gene:

RPL13P5

SOURCE GeneReport for Unigene cluster for RPL13P5 Gene:

Hs.720698
genes like me logo Genes that share expression patterns with RPL13P5: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RPL13P5 Gene

Orthologs for RPL13P5 Gene

Evolution for RPL13P5 Gene

ENSEMBL:
Gene Tree for RPL13P5 (if available)
TreeFam:
Gene Tree for RPL13P5 (if available)

No data available for Orthologs for RPL13P5 Gene

Paralogs for RPL13P5 Gene

No data available for Paralogs for RPL13P5 Gene

Variants for RPL13P5 Gene

Sequence variations from dbSNP and Humsavar for RPL13P5 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs11064443 -- 6,882,089(+) TTCCC(A/C)AGGGT intron-variant, upstream-variant-2KB
rs11064444 -- 6,884,725(+) AGCCA(C/T)GAGGA intron-variant, nc-transcript-variant, downstream-variant-500B
rs113726583 -- 6,884,513(+) TCCAG(A/G)CCTTG intron-variant, nc-transcript-variant, upstream-variant-2KB
rs114377948 -- 6,884,480(+) AAGCC(A/G)GAGTC intron-variant, nc-transcript-variant, upstream-variant-2KB
rs115112306 -- 6,883,904(+) TAGGG(C/T)GGTGG intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for RPL13P5 Gene

Variant ID Type Subtype PubMed ID
esv3580405 CNV gain 25503493
nsv1035811 CNV gain 25217958
nsv557261 CNV loss 21841781
nsv832324 CNV loss 17160897

Relevant External Links for RPL13P5 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL13P5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RPL13P5 Gene

Disorders for RPL13P5 Gene

Relevant External Links for RPL13P5

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RPL13P5

No disorders were found for RPL13P5 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL13P5 Gene

Publications for RPL13P5 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64
  3. Large-scale sequencing in human chromosome 12p13: experimental and computational gene structure determination. (PMID: 9074930) Ansari-Lari M.A. … Gibbs R.A. (Genome Res. 1997) 3 64

Products for RPL13P5 Gene

Sources for RPL13P5 Gene

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