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Aliases for RPL13P5 Gene

Aliases for RPL13P5 Gene

  • Ribosomal Protein L13 Pseudogene 5 2 3 5
  • Ribosomal Protein L13-Like 2
  • RPL13-2 Pseudogene 3
  • RPL13_4_1199 3
  • RPL13-2 3
  • RRPL13L 3
  • RPL13L 3

External Ids for RPL13P5 Gene

Previous HGNC Symbols for RPL13P5 Gene

  • RPL13L

Previous GeneCards Identifiers for RPL13P5 Gene

  • GC12P006866
  • GC12P006983
  • GC12P006984
  • GC12P006990
  • GC12P007002
  • GC12P007011
  • GC12P007026
  • GC12P007049
  • GC12P007113
  • GC12P007143

Summaries for RPL13P5 Gene

GeneCards Summary for RPL13P5 Gene

RPL13P5 (Ribosomal Protein L13 Pseudogene 5) is a Pseudogene.

Additional gene information for RPL13P5 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL13P5 Gene

Genomics for RPL13P5 Gene

Regulatory Elements for RPL13P5 Gene

Enhancers for RPL13P5 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12H006923 1.7 FANTOM5 ENCODE dbSUPER 20.8 +53.8 53762 6 HDGF ARID4B SIN3A ZNF2 YY1 ZNF143 FOS DEK PAF1 SP3 ZNF384 CHD4 ENSG00000219410 LRRC23 ENSG00000247853 SCARNA12 EMG1 PHB2 RPL13P5 NCAPD2
GH12H006940 1.9 FANTOM5 ENCODE dbSUPER 9.8 +80.3 80270 25 MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF548 SP3 NFYC ZNF384 CHD4 ENSG00000219410 ENSG00000247853 SPSB2 NCAPD2 SCARNA12 ING4 ENSG00000256967 EMG1
GH12H006788 1.5 FANTOM5 ENCODE dbSUPER 10.3 -82.3 -82313 4 ELF3 HDGF FOXA2 MLX ARID4B RAD21 THRB RARA YY1 SLC30A9 CD4 LPAR5 GPR162 P3H3 PTPN6 ING4 PTMS MLF2 GNB3 PIANP
GH12H006459 1.4 Ensembl ENCODE dbSUPER 10.7 -411.2 -411246 6 HDGF PKNOX1 ZFP64 BMI1 ZNF143 ZNF207 ATF7 ETV6 RUNX3 CREM ZNF384 ENSG00000219410 CHD4 ENSG00000247853 TAPBPL MRPL51 VAMP1 P3H3 NOP2 SCARNA12
GH12H006826 1.3 ENCODE dbSUPER 9.9 -44.7 -44692 3 HDGF ZFP64 ARID4B SIN3A DMAP1 ZNF2 ZNF143 SP3 MXD4 NFYC ZNF384 ENSG00000219410 CHD4 ENSG00000247853 P3H3 NCAPD2 ATN1 SPSB2 EMG1 SCARNA12
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RPL13P5 on UCSC Golden Path with GeneCards custom track

Promoters for RPL13P5 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000048360 -89 1801 MLX ARNT ARID4B SIN3A DMAP1 ZNF2 ZNF143 FOS SP3 SP5

Genomic Location for RPL13P5 Gene

Chromosome:
12
Start:
6,873,389 bp from pter
End:
6,884,741 bp from pter
Size:
11,353 bases
Orientation:
Plus strand

Genomic View for RPL13P5 Gene

Genes around RPL13P5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL13P5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL13P5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL13P5 Gene

Proteins for RPL13P5 Gene

Post-translational modifications for RPL13P5 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL13P5 Gene

Domains & Families for RPL13P5 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL13P5 Gene

Function for RPL13P5 Gene

Phenotypes From GWAS Catalog for RPL13P5 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for RPL13P5
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL13P5 Gene

Localization for RPL13P5 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL13P5 Gene

Pathways & Interactions for RPL13P5 Gene

SuperPathways for RPL13P5 Gene

No Data Available

Interacting Proteins for RPL13P5 Gene

Gene Ontology (GO) - Biological Process for RPL13P5 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL13P5 Gene

Drugs & Compounds for RPL13P5 Gene

No Compound Related Data Available

Transcripts for RPL13P5 Gene

mRNA/cDNA for RPL13P5 Gene

(3) Additional mRNA sequences :
(11) Selected AceView cDNA sequences:
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RPL13P5 Gene

Ribosomal protein L13 pseudogene 5:
Representative Sequences:

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for RPL13P5
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for RPL13P5 Gene

No ASD Table

Relevant External Links for RPL13P5 Gene

GeneLoc Exon Structure for
RPL13P5
ECgene alternative splicing isoforms for
RPL13P5

Expression for RPL13P5 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPL13P5 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPL13P5 Gene:

RPL13P5

SOURCE GeneReport for Unigene cluster for RPL13P5 Gene:

Hs.720698
genes like me logo Genes that share expression patterns with RPL13P5: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL13P5 Gene

Orthologs for RPL13P5 Gene

Evolution for RPL13P5 Gene

ENSEMBL:
Gene Tree for RPL13P5 (if available)
TreeFam:
Gene Tree for RPL13P5 (if available)

No data available for Orthologs for RPL13P5 Gene

Paralogs for RPL13P5 Gene

No data available for Paralogs for RPL13P5 Gene

Variants for RPL13P5 Gene

Sequence variations from dbSNP and Humsavar for RPL13P5 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs1003021140 -- 6,884,160(+) CATAG(C/T)AAGGT intron-variant, nc-transcript-variant, upstream-variant-2KB
rs1003385959 -- 6,883,216(+) ATGCC(C/T)AGCTA intron-variant, upstream-variant-2KB
rs1003764237 -- 6,882,960(+) CTTCC(C/T)TCTGA intron-variant, upstream-variant-2KB
rs1004845827 -- 6,883,728(+) TAAAT(A/C)ATTCA intron-variant, upstream-variant-2KB
rs1005849743 -- 6,884,773(+) CCCGC(A/G)TCCCT intron-variant, nc-transcript-variant, downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for RPL13P5 Gene

Variant ID Type Subtype PubMed ID
esv3580405 CNV gain 25503493
nsv1035811 CNV gain 25217958
nsv557261 CNV loss 21841781
nsv832324 CNV loss 17160897

Relevant External Links for RPL13P5 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL13P5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RPL13P5 Gene

Disorders for RPL13P5 Gene

Relevant External Links for RPL13P5

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RPL13P5

No disorders were found for RPL13P5 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL13P5 Gene

Publications for RPL13P5 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 60
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60
  3. Large-scale sequencing in human chromosome 12p13: experimental and computational gene structure determination. (PMID: 9074930) Ansari-Lari MA … Gibbs RA (Genome research 1997) 3 60

Products for RPL13P5 Gene

Sources for RPL13P5 Gene

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