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Aliases for RPL13P2 Gene

Aliases for RPL13P2 Gene

  • Ribosomal Protein L13 Pseudogene 2 2 3 5
  • Ribosomal Protein L13 Pseudogene 3 2 3
  • RPL13_7_1707 3
  • DJ599F21.2 3
  • RPL13P3 3

External Ids for RPL13P2 Gene

Previous HGNC Symbols for RPL13P2 Gene

  • RPL13P3

Previous GeneCards Identifiers for RPL13P2 Gene

  • GC20U990083
  • GC20P045366
  • GC20P045413
  • GC20P044161
  • GC20P044728
  • GC20P041469

Summaries for RPL13P2 Gene

GeneCards Summary for RPL13P2 Gene

RPL13P2 (Ribosomal Protein L13 Pseudogene 2) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL13P2 Gene

Genomics for RPL13P2 Gene

Regulatory Elements for RPL13P2 Gene

Enhancers for RPL13P2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH20F045967 0.2 ENCODE 16.3 -128.6 -128602 5.8 CREB3L1 ZFP64 FEZF1 DMAP1 YY1 ZNF416 ZNF143 SP3 NFYC TBX21 NCOA5 CD40 ZNF335 TP53RK PCIF1 SLC2A10 ENSG00000271984 SYS1 FTLP1 RPL13P2
GH20F045933 0.4 ENCODE 16.2 -163.1 -163146 6.3 MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 NFYC PLTP NEURL2 CD40 WFDC3 SLC2A10 TP53RK FTLP1 RNU6ATAC38P RPL13P2 ENSG00000232135
GH20F045334 1.2 FANTOM5 Ensembl ENCODE 16.2 -757.4 -757395 14.4 MLX ZFP64 DMAP1 YY1 ZNF143 SP3 NFYC SSRP1 GLIS1 RCOR2 NCOA5 PCIF1 ZNF335 CD40 ZSWIM1 ENSG00000271984 ENSG00000233352 LOC105372630 ENSG00000237464 RPL5P2
GH20F046099 1.4 Ensembl ENCODE 10.4 +0.3 326 0.8 PKNOX1 ZNF76 KLF17 SIN3A FEZF1 ZNF2 RAD21 ZNF335 ZNF366 SCRT2 PCIF1 ZNF335 TP53RK NCOA5 CD40 RPL13P2 ENSG00000271984 GC20P046113
GH20F046107 1.4 FANTOM5 Ensembl ENCODE 6.6 +9.1 9066 1.3 ATF1 CREB3L1 WRNIP1 ARID4B DMAP1 SLC30A9 ZNF143 ZMIZ1 SP3 NFYC CD40 SLC2A10 SPATA25 NEURL2 ENSG00000204044 SLC12A5 WFDC3 RPL13P2 SLC35C2 ZNF335
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RPL13P2 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPL13P2 Gene

Chromosome:
20
Start:
46,099,475 bp from pter
End:
46,100,193 bp from pter
Size:
719 bases
Orientation:
Plus strand

Genomic View for RPL13P2 Gene

Genes around RPL13P2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL13P2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL13P2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL13P2 Gene

Proteins for RPL13P2 Gene

Post-translational modifications for RPL13P2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL13P2 Gene

Domains & Families for RPL13P2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL13P2 Gene

Function for RPL13P2 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL13P2 Gene

Localization for RPL13P2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPL13P2 Gene

Pathways & Interactions for RPL13P2 Gene

SuperPathways for RPL13P2 Gene

No Data Available

Interacting Proteins for RPL13P2 Gene

Gene Ontology (GO) - Biological Process for RPL13P2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL13P2 Gene

Transcripts for RPL13P2 Gene

mRNA/cDNA for RPL13P2 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPL13P2 Gene

No ASD Table

Relevant External Links for RPL13P2 Gene

GeneLoc Exon Structure for
RPL13P2
ECgene alternative splicing isoforms for
RPL13P2

Expression for RPL13P2 Gene

mRNA expression in normal human tissues for RPL13P2 Gene

mRNA differential expression in normal tissues according to GTEx for RPL13P2 Gene

This gene is overexpressed in Testis (x45.9) and Cervix - Endocervix (x7.1).

NURSA nuclear receptor signaling pathways regulating expression of RPL13P2 Gene:

RPL13P2
genes like me logo Genes that share expression patterns with RPL13P2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RPL13P2 Gene

Orthologs for RPL13P2 Gene

Evolution for RPL13P2 Gene

ENSEMBL:
Gene Tree for RPL13P2 (if available)
TreeFam:
Gene Tree for RPL13P2 (if available)

No data available for Orthologs for RPL13P2 Gene

Paralogs for RPL13P2 Gene

No data available for Paralogs for RPL13P2 Gene

Variants for RPL13P2 Gene

Relevant External Links for RPL13P2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL13P2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL13P2 Gene

Disorders for RPL13P2 Gene

Relevant External Links for RPL13P2

Genetic Association Database (GAD)
RPL13P2
Human Genome Epidemiology (HuGE) Navigator
RPL13P2

No disorders were found for RPL13P2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL13P2 Gene

Publications for RPL13P2 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64
  2. Common genetic variants in candidate genes and risk of familial lymphoid malignancies. (PMID: 19573080) Liang X.S. … Goldin L.R. (Br. J. Haematol. 2009) 3 46 64
  3. Association between genetic variants in VEGF, ERCC3 and occupational benzene haematotoxicity. (PMID: 19773279) Hosgood H.D. … Lan Q. (Occup Environ Med 2009) 3 46 64
  4. Two new susceptibility loci for Kawasaki disease identified through genome-wide association analysis. (PMID: 22446961) Lee Y.C. … Wu J.Y. (Nat. Genet. 2012) 46 64
  5. Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci. (PMID: 22190364) Patsopoulos N.A. … de Bakker P.I. (Ann. Neurol. 2011) 46 64

Products for RPL13P2 Gene

Sources for RPL13P2 Gene

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