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Aliases for RPL13P12 Gene

Aliases for RPL13P12 Gene

  • Ribosomal Protein L13 Pseudogene 12 2 3 5
  • RPL13_4_1521 3

External Ids for RPL13P12 Gene

Previous GeneCards Identifiers for RPL13P12 Gene

  • GC17M017219

Summaries for RPL13P12 Gene

GeneCards Summary for RPL13P12 Gene

RPL13P12 (Ribosomal Protein L13 Pseudogene 12) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL13P12 Gene

Genomics for RPL13P12 Gene

Regulatory Elements for RPL13P12 Gene

Enhancers for RPL13P12 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17G017913 1.9 FANTOM5 Ensembl ENCODE dbSUPER 19.1 -530.2 -530216 1.6 PKNOX1 MLX ARID4B SIN3A FEZF1 ZNF2 FOS ZNF263 SP3 SP5 DRG2 FOXO3B ENSG00000264885 SMCR8 LOC100419436 RPL13P12 ZNF286B MPRIP-AS1 FAM106A RAI1
GH17G017833 1.9 FANTOM5 ENCODE dbSUPER 10.7 -454.4 -454392 8.9 MLX CREB3L1 ZFP64 DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC TBX21 ENSG00000264885 DRG2 SMCR8 TOM1L2 FOXO3B MPRIP-AS1 FAM106A RPL13P12 LOC100419436 FLCN
GH17G016406 1.9 FANTOM5 Ensembl ENCODE dbSUPER 10.1 +976.4 976353 2.2 HDGF ZFP64 SIN3A FEZF1 YBX1 ZNF207 ZNF548 SP3 JUNB REST ENSG00000266538 LOC649873 MPRIP-AS1 MEIS3P1 ENSG00000265519 UPF3AP1 FLCN LRRC75A-AS1 LRRC75A TRPV2
GH17G016476 1.7 Ensembl ENCODE dbSUPER 10.7 +905.8 905794 2.8 CREB3L1 ZFP64 DMAP1 YY1 ZNF143 SP3 NFYC TBX21 ZNF610 GLIS1 ENSG00000266538 LOC644422 LRRC75A-AS1 LRRC75A RPL13P12 ACTG1P24 LOC649873 CENPV GC17M016479 PIR35161
GH17G016385 1.6 Ensembl ENCODE dbSUPER 10.7 +997.2 997190 2.7 FOXA2 ARID4B SIN3A DMAP1 ZNF2 ZNF766 ZNF548 SP3 NFYC REST ENSG00000266538 LOC644422 LOC649873 RPL13P12 ACTG1P24 TBC1D26 TRPV2 TTC19 GC17M016375 ENSG00000265401
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RPL13P12 on UCSC Golden Path with GeneCards custom track

Promoters for RPL13P12 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000091897 262 799

Genomic Location for RPL13P12 Gene

Chromosome:
17
Start:
17,383,355 bp from pter
End:
17,384,063 bp from pter
Size:
709 bases
Orientation:
Minus strand

Genomic View for RPL13P12 Gene

Genes around RPL13P12 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL13P12 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL13P12 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL13P12 Gene

Proteins for RPL13P12 Gene

Post-translational modifications for RPL13P12 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL13P12 Gene

Domains & Families for RPL13P12 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL13P12 Gene

Function for RPL13P12 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL13P12 Gene

Localization for RPL13P12 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPL13P12 Gene

Pathways & Interactions for RPL13P12 Gene

SuperPathways for RPL13P12 Gene

No Data Available

Interacting Proteins for RPL13P12 Gene

Gene Ontology (GO) - Biological Process for RPL13P12 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL13P12 Gene

Transcripts for RPL13P12 Gene

mRNA/cDNA for RPL13P12 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for RPL13P12 Gene

No ASD Table

Relevant External Links for RPL13P12 Gene

GeneLoc Exon Structure for
RPL13P12
ECgene alternative splicing isoforms for
RPL13P12

Expression for RPL13P12 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPL13P12 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPL13P12 Gene:

RPL13P12
genes like me logo Genes that share expression patterns with RPL13P12: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL13P12 Gene

Orthologs for RPL13P12 Gene

This gene was present in the common ancestor of chordates.

Orthologs for RPL13P12 Gene

Organism Taxonomy Gene Similarity Type Details
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.9053 34
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.5220 34
Species where no ortholog for RPL13P12 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RPL13P12 Gene

ENSEMBL:
Gene Tree for RPL13P12 (if available)
TreeFam:
Gene Tree for RPL13P12 (if available)

Paralogs for RPL13P12 Gene

No data available for Paralogs for RPL13P12 Gene

Variants for RPL13P12 Gene

Relevant External Links for RPL13P12 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL13P12

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL13P12 Gene

Disorders for RPL13P12 Gene

Relevant External Links for RPL13P12

Genetic Association Database (GAD)
RPL13P12

No disorders were found for RPL13P12 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL13P12 Gene

Publications for RPL13P12 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64
  2. PRP19 transforms into a sensor of RPA-ssDNA after DNA damage and drives ATR activation via a ubiquitin-mediated circuitry. (PMID: 24332808) Marechal A. … Zou L. (Mol. Cell 2014) 3 64
  3. LGALS3BP regulates centriole biogenesis and centrosome hypertrophy in cancer cells. (PMID: 23443559) Fogeron M.L. … Lange B.M. (Nat Commun 2013) 3 64
  4. A cohesin-RAD21 interactome. (PMID: 22145905) Panigrahi A.K. … Pati D. (Biochem. J. 2012) 3 64
  5. Dynamics of cullin-RING ubiquitin ligase network revealed by systematic quantitative proteomics. (PMID: 21145461) Bennett E.J. … Harper J.W. (Cell 2010) 3 64

Products for RPL13P12 Gene

Sources for RPL13P12 Gene

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