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Aliases for RPL13AP6 Gene

Aliases for RPL13AP6 Gene

  • Ribosomal Protein L13a Pseudogene 6 2 3 5
  • RPL13A_7_1096 3
  • BA348N5.5 3

External Ids for RPL13AP6 Gene

Previous GeneCards Identifiers for RPL13AP6 Gene

  • GC10U900520
  • GC10M112688
  • GC10M106325

Summaries for RPL13AP6 Gene

GeneCards Summary for RPL13AP6 Gene

RPL13AP6 (Ribosomal Protein L13a Pseudogene 6) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL13AP6 Gene

Genomics for RPL13AP6 Gene

Regulatory Elements for RPL13AP6 Gene

Enhancers for RPL13AP6 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10G110923 0.8 ENCODE 0.4 +13.1 13073 1.4 ELF3 SOX13 MXI1 KLF1 FOXA2 SAP130 ZNF133 ARID4B MAX ZNF644 ADRA2A SHOC2 PDCD4 ADD3 RPL13AP6
GH10G110922 0.5 Ensembl 0.4 +15.2 15155 0.2 PRDM6 CHD1 YY1 SHOC2 RPL13AP6
GH10G110932 0.4 Ensembl 0.4 +5.1 5055 0.4 PRDM1 PDCD4 ENSG00000232470 RPL13AP6 SHOC2
GH10G110972 0.5 Ensembl 0.3 -35.4 -35446 0.2 ZSCAN5C SP2 ZBTB17 SHOC2 BBIP1 ADRA2A MIR548E RPL13AP6
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RPL13AP6 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPL13AP6 Gene

Chromosome:
10
Start:
110,936,603 bp from pter
End:
110,937,255 bp from pter
Size:
653 bases
Orientation:
Minus strand

Genomic View for RPL13AP6 Gene

Genes around RPL13AP6 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL13AP6 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL13AP6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL13AP6 Gene

Proteins for RPL13AP6 Gene

Post-translational modifications for RPL13AP6 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL13AP6 Gene

Domains & Families for RPL13AP6 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL13AP6 Gene

Function for RPL13AP6 Gene

Phenotypes for RPL13AP6 Gene

GenomeRNAi human phenotypes for RPL13AP6:
genes like me logo Genes that share phenotypes with RPL13AP6: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL13AP6 Gene

Localization for RPL13AP6 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPL13AP6 Gene

Pathways & Interactions for RPL13AP6 Gene

SuperPathways for RPL13AP6 Gene

No Data Available

Interacting Proteins for RPL13AP6 Gene

Gene Ontology (GO) - Biological Process for RPL13AP6 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL13AP6 Gene

Drugs & Compounds for RPL13AP6 Gene

No Compound Related Data Available

Transcripts for RPL13AP6 Gene

mRNA/cDNA for RPL13AP6 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RPL13AP6 Gene

Ribosomal protein L13a pseudogene 6:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RPL13AP6 Gene

No ASD Table

Relevant External Links for RPL13AP6 Gene

GeneLoc Exon Structure for
RPL13AP6
ECgene alternative splicing isoforms for
RPL13AP6

Expression for RPL13AP6 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPL13AP6 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPL13AP6 Gene:

RPL13AP6

SOURCE GeneReport for Unigene cluster for RPL13AP6 Gene:

Hs.632083
genes like me logo Genes that share expression patterns with RPL13AP6: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL13AP6 Gene

Orthologs for RPL13AP6 Gene

Evolution for RPL13AP6 Gene

ENSEMBL:
Gene Tree for RPL13AP6 (if available)
TreeFam:
Gene Tree for RPL13AP6 (if available)

No data available for Orthologs for RPL13AP6 Gene

Paralogs for RPL13AP6 Gene

No data available for Paralogs for RPL13AP6 Gene

Variants for RPL13AP6 Gene

Sequence variations from dbSNP and Humsavar for RPL13AP6 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs1003799423 -- 110,938,474(+) ATAAT(A/T)ATAAA intron-variant, upstream-variant-2KB
rs1003864138 -- 110,936,587(+) TCTTT(C/T)CCTTT intron-variant, downstream-variant-500B, upstream-variant-2KB
rs1004462276 -- 110,937,783(+) CATAT(A/G)AGTTT intron-variant, upstream-variant-2KB
rs1005470591 -- 110,939,089(+) CTTGT(A/T)GCCCT intron-variant, upstream-variant-2KB, utr-variant-5-prime
rs1005549889 -- 110,938,009(+) TGTAC(A/G)AAGTT intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for RPL13AP6 Gene

Variant ID Type Subtype PubMed ID
dgv974n100 CNV loss 25217958
nsv1035602 CNV loss 25217958
nsv518667 CNV loss 19592680
nsv7211 OTHER inversion 18451855
nsv831985 CNV gain+loss 17160897
nsv948185 CNV duplication 23825009

Relevant External Links for RPL13AP6 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL13AP6

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RPL13AP6 Gene

Disorders for RPL13AP6 Gene

Relevant External Links for RPL13AP6

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RPL13AP6

No disorders were found for RPL13AP6 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL13AP6 Gene

Publications for RPL13AP6 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64
  2. Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. (PMID: 10737800) Dias Neto E. … Simpson A.J.G. (Proc. Natl. Acad. Sci. U.S.A. 2000) 3 64

Products for RPL13AP6 Gene

Sources for RPL13AP6 Gene

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