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Aliases for RPL13AP5 Gene

Aliases for RPL13AP5 Gene

  • Ribosomal Protein L13a Pseudogene 5 2 3
  • RPL13A_8_1086 3
  • BA196N24.2 3

External Ids for RPL13AP5 Gene

Previous GeneCards Identifiers for RPL13AP5 Gene

  • GC10U900519
  • GC10P098502
  • GC10P098487
  • GC10P098510
  • GC10P092139

Summaries for RPL13AP5 Gene

GeneCards Summary for RPL13AP5 Gene

RPL13AP5 (Ribosomal Protein L13a Pseudogene 5) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL13AP5 Gene

Genomics for RPL13AP5 Gene

Regulatory Elements for RPL13AP5 Gene

Genomic Location for RPL13AP5 Gene

Start:
96,750,266 bp from pter
End:
96,750,923 bp from pter
Size:
658 bases
Orientation:
Plus strand

Genomic View for RPL13AP5 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RPL13AP5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL13AP5 Gene

Proteins for RPL13AP5 Gene

Post-translational modifications for RPL13AP5 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL13AP5 Gene

Domains for RPL13AP5 Gene

Gene Families for RPL13AP5 Gene

HGNC:
  • RPL :L ribosomal proteins

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RPL13AP5: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL13AP5 Gene

Function for RPL13AP5 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for RPL13AP5 Gene

Localization for RPL13AP5 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPL13AP5 Gene

Pathways for RPL13AP5 Gene

SuperPathways for RPL13AP5 Gene

No Data Available

Interacting Proteins for RPL13AP5 Gene

Gene Ontology (GO) - Biological Process for RPL13AP5 Gene

None

No data available for Pathways by source for RPL13AP5 Gene

Transcripts for RPL13AP5 Gene

mRNA/cDNA for RPL13AP5 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RPL13AP5 Gene

Ribosomal protein L13a pseudogene 5:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RPL13AP5 Gene

No ASD Table

Relevant External Links for RPL13AP5 Gene

GeneLoc Exon Structure for
RPL13AP5
ECgene alternative splicing isoforms for
RPL13AP5

Expression for RPL13AP5 Gene

mRNA expression in normal human tissues for RPL13AP5 Gene

SOURCE GeneReport for Unigene cluster for RPL13AP5 Gene Hs.645344

genes like me logo Genes that share expressions with RPL13AP5: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for RPL13AP5 Gene

Orthologs for RPL13AP5 Gene

Evolution for RPL13AP5 Gene

ENSEMBL:
Gene Tree for RPL13AP5 (if available)
TreeFam:
Gene Tree for RPL13AP5 (if available)

No data available for Orthologs for RPL13AP5 Gene

Paralogs for RPL13AP5 Gene

No data available for Paralogs for RPL13AP5 Gene

Variants for RPL13AP5 Gene

Sequence variations from dbSNP and Humsavar for RPL13AP5 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type MAF
rs596341 -- 96,748,592(-) ctgta(A/G)agaca upstream-variant-2KB
rs661067 -- 96,751,278(-) ctcgg(A/C)ctccc downstream-variant-500B
rs661998 -- 96,751,055(-) CACTT(G/T)GACTA downstream-variant-500B
rs675827 -- 96,750,278(-) GGCAG(C/T)CGCTT nc-transcript-variant
rs1058953 -- 96,750,507(+) ACTTC(C/G)GGGCC nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for RPL13AP5 Gene

Variant ID Type Subtype PubMed ID
nsv9739 CNV Gain+Loss 18304495
nsv912261 CNV Loss 21882294
nsv912262 CNV Loss 21882294
nsv912264 CNV Loss 21882294
nsv833862 CNV Loss 17160897
nsv912265 CNV Loss 21882294
nsv833863 CNV Loss 17160897

Relevant External Links for RPL13AP5 Gene

HapMap Linkage Disequilibrium report
RPL13AP5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for RPL13AP5 Gene

Disorders for RPL13AP5 Gene

Relevant External Links for RPL13AP5

Genetic Association Database (GAD)
RPL13AP5
genes like me logo Genes that share disorders with RPL13AP5: view

No data available for UniProtKB/Swiss-Prot for RPL13AP5 Gene

Publications for RPL13AP5 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3
  2. A second-generation genomewide screen for asthma-susceptibility alleles in a founder population. (PMID: 11022011) Ober C. … Cox N.J. (Am. J. Hum. Genet. 2000) 48

Products for RPL13AP5 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate RPL13AP5
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for RPL13AP5
    • Block miRNA regulation of RPL13AP5 using miScript Target Protectors

    Sources for RPL13AP5 Gene

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