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Aliases for RPL13AP5 Gene

Aliases for RPL13AP5 Gene

  • Ribosomal Protein L13a Pseudogene 5 2 3 5
  • RPL13A_8_1086 3
  • BA196N24.2 3

External Ids for RPL13AP5 Gene

Previous GeneCards Identifiers for RPL13AP5 Gene

  • GC10U900519
  • GC10P098502
  • GC10P098487
  • GC10P098510
  • GC10P092139

Summaries for RPL13AP5 Gene

GeneCards Summary for RPL13AP5 Gene

RPL13AP5 (Ribosomal Protein L13a Pseudogene 5) is a Pseudogene.

Additional gene information for RPL13AP5 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL13AP5 Gene

Genomics for RPL13AP5 Gene

Regulatory Elements for RPL13AP5 Gene

Enhancers for RPL13AP5 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10H097331 1.4 ENCODE dbSUPER 32.8 +583.4 583384 4 HDGF FOXA2 ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 ZBTB7B YY1 EXOSC1 NPM1P26 R3HCC1L RPL13AP5 ENSG00000230928 LOXL4 LCOR TM9SF3 SLIT1 MARVELD1
GH10H097421 1.2 ENCODE dbSUPER 21.8 +673.1 673093 2 ZNF493 ZFP64 BATF ZNF138 ZNF366 ZNF354C FOS ETV6 ZNF202 ZNF654 MMS19 EXOSC1 LCOR R3HCC1L NPM1P26 TM9SF3 RPL13AP5 MARVELD1 LOXL4 ZDHHC16
GH10H096088 1.2 ENCODE 19 -660.4 -660419 2 PKNOX1 FOXA2 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF766 ZNF143 TCTN3 ZNF518A RPL13AP5 NPM1P26 CCNJ RNU6-271P LCOR TM9SF3 CC2D2B ENTPD1-AS1
GH10H096670 2 FANTOM5 Ensembl ENCODE dbSUPER 10.8 -76.1 -76119 8 HDGF PKNOX1 FOXA2 MLX ARID4B YY1 TCF12 ZNF207 RUNX3 MCM3 PIK3AP1 NPM1P26 TCTN3 TM9SF3 RPL13AP5 CCNJ EXOSC1 LCOR GC10M096631
GH10H097318 1.3 ENCODE dbSUPER 15.1 +569.9 569913 4 FOXA2 ARNT ARID4B SIN3A FEZF1 ZNF2 YY1 ZNF143 ZNF207 FOS RPL13AP5 ARHGAP19 NPM1P26 MORN4 SLIT1 EXOSC1 ENSG00000230928 LCOR LOXL4 R3HCC1L
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RPL13AP5 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPL13AP5 Gene

Chromosome:
10
Start:
96,750,266 bp from pter
End:
96,750,923 bp from pter
Size:
658 bases
Orientation:
Plus strand

Genomic View for RPL13AP5 Gene

Genes around RPL13AP5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL13AP5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL13AP5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL13AP5 Gene

Proteins for RPL13AP5 Gene

Post-translational modifications for RPL13AP5 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL13AP5 Gene

Domains & Families for RPL13AP5 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL13AP5 Gene

Function for RPL13AP5 Gene

Phenotypes From GWAS Catalog for RPL13AP5 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for RPL13AP5
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL13AP5 Gene

Localization for RPL13AP5 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL13AP5 Gene

Pathways & Interactions for RPL13AP5 Gene

SuperPathways for RPL13AP5 Gene

No Data Available

Interacting Proteins for RPL13AP5 Gene

Gene Ontology (GO) - Biological Process for RPL13AP5 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL13AP5 Gene

Drugs & Compounds for RPL13AP5 Gene

No Compound Related Data Available

Transcripts for RPL13AP5 Gene

mRNA/cDNA for RPL13AP5 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RPL13AP5 Gene

Ribosomal protein L13a pseudogene 5:
Representative Sequences:

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for RPL13AP5
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for RPL13AP5 Gene

No ASD Table

Relevant External Links for RPL13AP5 Gene

GeneLoc Exon Structure for
RPL13AP5
ECgene alternative splicing isoforms for
RPL13AP5

Expression for RPL13AP5 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPL13AP5 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPL13AP5 Gene:

RPL13AP5

SOURCE GeneReport for Unigene cluster for RPL13AP5 Gene:

Hs.645344
genes like me logo Genes that share expression patterns with RPL13AP5: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL13AP5 Gene

Orthologs for RPL13AP5 Gene

Evolution for RPL13AP5 Gene

ENSEMBL:
Gene Tree for RPL13AP5 (if available)
TreeFam:
Gene Tree for RPL13AP5 (if available)

No data available for Orthologs for RPL13AP5 Gene

Paralogs for RPL13AP5 Gene

No data available for Paralogs for RPL13AP5 Gene

Variants for RPL13AP5 Gene

Sequence variations from dbSNP and Humsavar for RPL13AP5 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs1000856316 -- 96,749,460(+) AGTGG(C/T)TCACG upstream-variant-2KB
rs1001384120 -- 96,750,155(+) CACCT(A/G)TAATC upstream-variant-2KB
rs1001541592 -- 96,749,625(+) AGGCA(C/T)GAGAA upstream-variant-2KB
rs1002313473 -- 96,748,846(+) GCAGT(G/T)AGCTG upstream-variant-2KB
rs1003603271 -- 96,751,000(+) ACATT(C/G)TATGT downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for RPL13AP5 Gene

Variant ID Type Subtype PubMed ID
esv3577638 CNV gain 25503493
nsv1053801 CNV gain 25217958
nsv1110852 OTHER inversion 24896259
nsv508601 CNV deletion 20534489
nsv930478 CNV deletion 23359205
nsv948153 CNV duplication 23825009

Relevant External Links for RPL13AP5 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL13AP5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RPL13AP5 Gene

Disorders for RPL13AP5 Gene

Relevant External Links for RPL13AP5

Genetic Association Database (GAD)
RPL13AP5
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RPL13AP5

No disorders were found for RPL13AP5 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL13AP5 Gene

Publications for RPL13AP5 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 60
  2. A second-generation genomewide screen for asthma-susceptibility alleles in a founder population. (PMID: 11022011) Ober C … Cox NJ (American journal of human genetics 2000) 45 60

Products for RPL13AP5 Gene

Sources for RPL13AP5 Gene

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