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Aliases for RPL13AP5 Gene

Aliases for RPL13AP5 Gene

  • Ribosomal Protein L13a Pseudogene 5 2 3 5
  • RPL13A_8_1086 3
  • BA196N24.2 3

External Ids for RPL13AP5 Gene

Previous GeneCards Identifiers for RPL13AP5 Gene

  • GC10U900519
  • GC10P098502
  • GC10P098487
  • GC10P098510
  • GC10P092139

Summaries for RPL13AP5 Gene

GeneCards Summary for RPL13AP5 Gene

RPL13AP5 (Ribosomal Protein L13a Pseudogene 5) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL13AP5 Gene

Genomics for RPL13AP5 Gene

Regulatory Elements for RPL13AP5 Gene

Enhancers for RPL13AP5 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10F097421 0.6 ENCODE 21.6 +673.1 673093 2.8 ZFP64 ZNF493 ZNF138 ZNF366 ZNF354C FOS ZNF202 ZNF654 ZNF680 OVOL3 EXOSC1 R3HCC1L LCOR NPM1P26 LOXL4 ENSG00000230928 RPL13AP5 MARVELD1 PYROXD2 SLIT1
GH10F096128 0.5 ENCODE 20.1 -619.8 -619810 3.3 HDGF CREB3L1 WRNIP1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 ZNF766 NPM1P26 RPL13AP5 ENTPD1-AS1 SLIT1-AS1 LCOR GC10M096129 ZNF518A
GH10F097331 0.5 ENCODE 19.1 +583.4 583384 4.9 CREB3L1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 ZNF207 KLF13 ZNF263 MCM3 ENSG00000230928 EXOSC1 RPL13AP5 LOXL4 SLIT1 R3HCC1L ARHGAP19 NPM1P26 MARVELD1 SLIT1-AS1
GH10F096088 0.6 ENCODE 19 -660.4 -660419 2.2 PKNOX1 ARNT CREB3L1 WRNIP1 ARID4B SIN3A DMAP1 ZNF2 YY1 CBX5 RPL13AP5 NPM1P26 RNU6-271P LCOR C10orf131 CC2D2B ENTPD1-AS1 ZNF518A GC10P096086
GH10F096856 0.5 Ensembl 12.7 +106.2 106235 0.6 ZNF362 MAZ KLF17 ZNF791 ZFHX2 ZNF366 PATZ1 PRDM10 WT1 SP7 MARVELD1 LCOR MIR607 RPL13AP5 EXOSC1 SLIT1-AS1 SLIT1 LOC102723665 HMGN2P35
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RPL13AP5 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPL13AP5 Gene

Chromosome:
10
Start:
96,750,266 bp from pter
End:
96,750,923 bp from pter
Size:
658 bases
Orientation:
Plus strand

Genomic View for RPL13AP5 Gene

Genes around RPL13AP5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL13AP5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL13AP5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL13AP5 Gene

Proteins for RPL13AP5 Gene

Post-translational modifications for RPL13AP5 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL13AP5 Gene

Domains & Families for RPL13AP5 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL13AP5 Gene

Function for RPL13AP5 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL13AP5 Gene

Localization for RPL13AP5 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPL13AP5 Gene

Pathways & Interactions for RPL13AP5 Gene

SuperPathways for RPL13AP5 Gene

No Data Available

Interacting Proteins for RPL13AP5 Gene

Gene Ontology (GO) - Biological Process for RPL13AP5 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL13AP5 Gene

Transcripts for RPL13AP5 Gene

mRNA/cDNA for RPL13AP5 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RPL13AP5 Gene

Ribosomal protein L13a pseudogene 5:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RPL13AP5 Gene

No ASD Table

Relevant External Links for RPL13AP5 Gene

GeneLoc Exon Structure for
RPL13AP5
ECgene alternative splicing isoforms for
RPL13AP5

Expression for RPL13AP5 Gene

mRNA expression in normal human tissues for RPL13AP5 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPL13AP5 Gene:

RPL13AP5

SOURCE GeneReport for Unigene cluster for RPL13AP5 Gene:

Hs.645344
genes like me logo Genes that share expression patterns with RPL13AP5: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RPL13AP5 Gene

Orthologs for RPL13AP5 Gene

Evolution for RPL13AP5 Gene

ENSEMBL:
Gene Tree for RPL13AP5 (if available)
TreeFam:
Gene Tree for RPL13AP5 (if available)

No data available for Orthologs for RPL13AP5 Gene

Paralogs for RPL13AP5 Gene

No data available for Paralogs for RPL13AP5 Gene

Variants for RPL13AP5 Gene

Sequence variations from dbSNP and Humsavar for RPL13AP5 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs1058953 -- 96,750,507(+) ACTTC(C/G)GGGCC nc-transcript-variant
rs11188904 -- 96,748,525(+) TCTCA(A/G)ACTTA upstream-variant-2KB
rs11188905 -- 96,750,018(+) GGAGA(A/G)TCTCT upstream-variant-2KB
rs113771564 -- 96,748,455(+) CCACA(A/G)ACGGG upstream-variant-2KB
rs114452461 -- 96,749,967(+) CGGAC(A/G)TGGTT upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for RPL13AP5 Gene

Variant ID Type Subtype PubMed ID
esv3577638 CNV gain 25503493
nsv1053801 CNV gain 25217958
nsv1110852 OTHER inversion 24896259
nsv508601 CNV deletion 20534489
nsv930478 CNV deletion 23359205
nsv948153 CNV duplication 23825009

Relevant External Links for RPL13AP5 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL13AP5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RPL13AP5 Gene

Disorders for RPL13AP5 Gene

Relevant External Links for RPL13AP5

Genetic Association Database (GAD)
RPL13AP5
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RPL13AP5

No disorders were found for RPL13AP5 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL13AP5 Gene

Publications for RPL13AP5 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64
  2. A second-generation genomewide screen for asthma-susceptibility alleles in a founder population. (PMID: 11022011) Ober C. … Cox N.J. (Am. J. Hum. Genet. 2000) 46 64

Products for RPL13AP5 Gene

Sources for RPL13AP5 Gene

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