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Aliases for RPL13AP3 Gene

Aliases for RPL13AP3 Gene

  • Ribosomal Protein L13a Pseudogene 3 2 3 5
  • 60S Ribosomal Protein L13a Pseudogene 3 4
  • RPL13A_11_1370 3

External Ids for RPL13AP3 Gene

Previous GeneCards Identifiers for RPL13AP3 Gene

  • GC14U900553
  • GC14P055304
  • GC14P056232
  • GC14P036396

Summaries for RPL13AP3 Gene

GeneCards Summary for RPL13AP3 Gene

RPL13AP3 (Ribosomal Protein L13a Pseudogene 3) is a Pseudogene. GO annotations related to this gene include structural constituent of ribosome.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL13AP3 Gene

Genomics for RPL13AP3 Gene

Regulatory Elements for RPL13AP3 Gene

Enhancers for RPL13AP3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH14F055766 0.4 ENCODE 6.6 +1.1 1120 1.4 ZNF146 RPL13AP3 GC14P055769 LINC00520
GH14F055773 0.2 ENCODE 6.2 +8.1 8096 1.3 RPL13AP3 GC14P055769 LINC00520
GH14F055779 1 Ensembl ENCODE 0.4 +14.3 14254 2.6 CTCF MXI1 STAT1 HLF CEBPB CEBPG EBF1 EP300 RAD21 ARID1B RPL13AP3 GC14P055769 LINC00520
GH14F055790 0.8 Ensembl ENCODE 0.3 +25.0 25024 2.0 TBP ATF3 JUN CEBPB EP300 NR2F2 TBPL2 LINC00520 RPL13AP3 GC14P055769
GH14F055794 0.8 Ensembl ENCODE 0.3 +28.7 28724 0.2 TBP JUND JUN STAT3 FOS FOSL2 PELI2 LINC00520 RPL13AP3 GC14P055769
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RPL13AP3 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPL13AP3 Gene

Chromosome:
14
Start:
55,766,177 bp from pter
End:
55,767,717 bp from pter
Size:
1,541 bases
Orientation:
Plus strand

Genomic View for RPL13AP3 Gene

Genes around RPL13AP3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL13AP3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL13AP3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL13AP3 Gene

Proteins for RPL13AP3 Gene

  • Protein details for RPL13AP3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6NVV1-R13P3_HUMAN
    Recommended name:
    Putative 60S ribosomal protein L13a protein RPL13AP3
    Protein Accession:
    Q6NVV1

    Protein attributes for RPL13AP3 Gene

    Size:
    102 amino acids
    Molecular mass:
    12135 Da
    Quaternary structure:
    No Data Available

neXtProt entry for RPL13AP3 Gene

Post-translational modifications for RPL13AP3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL13AP3 Gene

Domains & Families for RPL13AP3 Gene

Protein Domains for RPL13AP3 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

Q6NVV1

UniProtKB/Swiss-Prot:

R13P3_HUMAN :
  • Belongs to the ribosomal protein L13P family.
Family:
  • Belongs to the ribosomal protein L13P family.
genes like me logo Genes that share domains with RPL13AP3: view

No data available for Gene Families and Suggested Antigen Peptide Sequences for RPL13AP3 Gene

Function for RPL13AP3 Gene

Gene Ontology (GO) - Molecular Function for RPL13AP3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003735 structural constituent of ribosome IEA --
genes like me logo Genes that share ontologies with RPL13AP3: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL13AP3 Gene

Localization for RPL13AP3 Gene

Gene Ontology (GO) - Cellular Components for RPL13AP3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IDA 21630459
GO:0005840 ribosome IEA --
GO:0070062 extracellular exosome IDA 23376485
genes like me logo Genes that share ontologies with RPL13AP3: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from COMPARTMENTS for RPL13AP3 Gene

Pathways & Interactions for RPL13AP3 Gene

SuperPathways for RPL13AP3 Gene

No Data Available

Interacting Proteins for RPL13AP3 Gene

Selected Interacting proteins: Q6NVV1-R13P3_HUMAN for RPL13AP3 Gene via IID

Symbol External ID(s) Details
ESR2

Gene Ontology (GO) - Biological Process for RPL13AP3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006412 translation IEA --
genes like me logo Genes that share ontologies with RPL13AP3: view

No data available for Pathways by source and SIGNOR curated interactions for RPL13AP3 Gene

Transcripts for RPL13AP3 Gene

mRNA/cDNA for RPL13AP3 Gene

(2) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RPL13AP3 Gene

Ribosomal protein L13a pseudogene 3:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RPL13AP3 Gene

No ASD Table

Relevant External Links for RPL13AP3 Gene

GeneLoc Exon Structure for
RPL13AP3
ECgene alternative splicing isoforms for
RPL13AP3

Expression for RPL13AP3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPL13AP3 Gene

mRNA differential expression in normal tissues according to GTEx for RPL13AP3 Gene

This gene is overexpressed in Testis (x46.6).

Protein differential expression in normal tissues from HIPED for RPL13AP3 Gene

This gene is overexpressed in Skin (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for RPL13AP3 Gene



Protein tissue co-expression partners for RPL13AP3 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPL13AP3 Gene:

RPL13AP3

SOURCE GeneReport for Unigene cluster for RPL13AP3 Gene:

Hs.663461
genes like me logo Genes that share expression patterns with RPL13AP3: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for RPL13AP3 Gene

Orthologs for RPL13AP3 Gene

Evolution for RPL13AP3 Gene

ENSEMBL:
Gene Tree for RPL13AP3 (if available)
TreeFam:
Gene Tree for RPL13AP3 (if available)

No data available for Orthologs for RPL13AP3 Gene

Paralogs for RPL13AP3 Gene

No data available for Paralogs for RPL13AP3 Gene

Variants for RPL13AP3 Gene

Sequence variations from dbSNP and Humsavar for RPL13AP3 Gene

SNP ID Clin Chr 14 pos Sequence Context AA Info Type
rs10141372 -- 55,765,731(+) AGACA(C/G)TATAC upstream-variant-2KB
rs10144431 -- 55,766,351(+) TCCTC(G/T)GCAAG nc-transcript-variant
rs111797504 -- 55,766,050(+) GCAGG(-/T)TAAGA upstream-variant-2KB
rs112002480 -- 55,768,118(+) TTTGT(C/G)AATTA downstream-variant-500B
rs112036814 -- 55,766,229(+) GGGCC(A/G)CCTGG upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for RPL13AP3 Gene

Variant ID Type Subtype PubMed ID
esv3634579 CNV gain 21293372
esv3892549 CNV gain 25118596
nsv832804 CNV gain 17160897
nsv983828 CNV duplication 23825009

Relevant External Links for RPL13AP3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL13AP3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RPL13AP3 Gene

Disorders for RPL13AP3 Gene

Relevant External Links for RPL13AP3

Genetic Association Database (GAD)
RPL13AP3
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RPL13AP3

No disorders were found for RPL13AP3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL13AP3 Gene

Publications for RPL13AP3 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64
  2. Proteomic analysis of podocyte exosome-enriched fraction from normal human urine. (PMID: 23376485) Prunotto M. … Moll S. (J Proteomics 2013) 3 64
  3. Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan. (PMID: 23648065) Low S.K. … Nakamura Y. (Cancer Sci. 2013) 3 64
  4. Proteomic characterization of the human sperm nucleus. (PMID: 21630459) de Mateo S. … Oliva R. (Proteomics 2011) 3 64
  5. Framingham Heart Study 100K Project: genome-wide associations for blood pressure and arterial stiffness. (PMID: 17903302) Levy D. … Mitchell G.F. (BMC Med. Genet. 2007) 46 64

Products for RPL13AP3 Gene

Sources for RPL13AP3 Gene

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