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Aliases for RPL13AP3 Gene

Aliases for RPL13AP3 Gene

  • Ribosomal Protein L13a Pseudogene 3 2 3
  • 60S Ribosomal Protein L13a Pseudogene 3 4
  • RPL13A_11_1370 3

External Ids for RPL13AP3 Gene

Previous GeneCards Identifiers for RPL13AP3 Gene

  • GC14U900553
  • GC14P055304
  • GC14P056232
  • GC14P036396

Summaries for RPL13AP3 Gene

GeneCards Summary for RPL13AP3 Gene

RPL13AP3 (Ribosomal Protein L13a Pseudogene 3) is a Pseudogene. GO annotations related to this gene include structural constituent of ribosome.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL13AP3 Gene

Genomics for RPL13AP3 Gene

Regulatory Elements for RPL13AP3 Gene

Genomic Location for RPL13AP3 Gene

Start:
55,766,177 bp from pter
End:
55,767,717 bp from pter
Size:
1,541 bases
Orientation:
Plus strand

Genomic View for RPL13AP3 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RPL13AP3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL13AP3 Gene

Proteins for RPL13AP3 Gene

  • Protein details for RPL13AP3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6NVV1-R13P3_HUMAN
    Recommended name:
    Putative 60S ribosomal protein L13a protein RPL13AP3
    Protein Accession:
    Q6NVV1
    Secondary Accessions:

    Protein attributes for RPL13AP3 Gene

    Size:
    102 amino acids
    Molecular mass:
    12135 Da
    Quaternary structure:
    No Data Available

neXtProt entry for RPL13AP3 Gene

Proteomics data for RPL13AP3 Gene at MOPED

Post-translational modifications for RPL13AP3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL13AP3 Gene

Domains for RPL13AP3 Gene

Gene Families for RPL13AP3 Gene

HGNC:
  • RPL :L ribosomal proteins

Protein Domains for RPL13AP3 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

Q6NVV1

UniProtKB/Swiss-Prot:

R13P3_HUMAN :
  • Q6NVV1
Family:
  • Belongs to the ribosomal protein L13P family.
genes like me logo Genes that share domains with RPL13AP3: view

No data available for Suggested Antigen Peptide Sequences for RPL13AP3 Gene

Function for RPL13AP3 Gene

Gene Ontology (GO) - Molecular Function for RPL13AP3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003735 structural constituent of ribosome IEA --
genes like me logo Genes that share ontologies with RPL13AP3: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for RPL13AP3 Gene

Localization for RPL13AP3 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for RPL13AP3 Gene COMPARTMENTS Subcellular localization image for RPL13AP3 gene
Compartment Confidence
cytosol 3
mitochondrion 2
nucleus 2
extracellular 1

Gene Ontology (GO) - Cellular Components for RPL13AP3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IDA 21630459
GO:0005840 ribosome IEA --
GO:0070062 extracellular exosome IDA 23376485
genes like me logo Genes that share ontologies with RPL13AP3: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for RPL13AP3 Gene

Pathways for RPL13AP3 Gene

SuperPathways for RPL13AP3 Gene

No Data Available

Interacting Proteins for RPL13AP3 Gene

Selected Interacting proteins: Q6NVV1-R13P3_HUMAN for RPL13AP3 Gene via I2D

Symbol External ID(s) Details
ESR2

Gene Ontology (GO) - Biological Process for RPL13AP3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006412 translation IEA --
genes like me logo Genes that share ontologies with RPL13AP3: view

No data available for Pathways by source for RPL13AP3 Gene

Transcripts for RPL13AP3 Gene

mRNA/cDNA for RPL13AP3 Gene

(2) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RPL13AP3 Gene

Ribosomal protein L13a pseudogene 3:
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for RPL13AP3

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for RPL13AP3
  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPL13AP3 Gene

No ASD Table

Relevant External Links for RPL13AP3 Gene

GeneLoc Exon Structure for
RPL13AP3
ECgene alternative splicing isoforms for
RPL13AP3

Expression for RPL13AP3 Gene

mRNA expression in normal human tissues for RPL13AP3 Gene

mRNA differential expression in normal tissues according to GTEx for RPL13AP3 Gene

This gene is overexpressed in Testis (46.6).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for RPL13AP3 Gene

SOURCE GeneReport for Unigene cluster for RPL13AP3 Gene Hs.663461

genes like me logo Genes that share expressions with RPL13AP3: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for RPL13AP3 Gene

Orthologs for RPL13AP3 Gene

Evolution for RPL13AP3 Gene

ENSEMBL:
Gene Tree for RPL13AP3 (if available)
TreeFam:
Gene Tree for RPL13AP3 (if available)

No data available for Orthologs for RPL13AP3 Gene

Paralogs for RPL13AP3 Gene

No data available for Paralogs for RPL13AP3 Gene

Variants for RPL13AP3 Gene

Sequence variations from dbSNP and Humsavar for RPL13AP3 Gene

SNP ID Clin Chr 14 pos Sequence Context AA Info Type MAF
rs2152281 -- 55,766,542(-) CAGCA(A/G)GAACC nc-transcript-variant
rs2184557 -- 55,766,252(-) TAACT(A/G)CTTAG nc-transcript-variant
rs2342591 -- 55,764,642(+) TTATT(C/T)AAGAG upstream-variant-2KB
rs2342592 -- 55,764,860(+) aagat(A/G)gaaaa upstream-variant-2KB
rs4898873 -- 55,768,004(+) ccttg(C/T)tccct downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for RPL13AP3 Gene

Variant ID Type Subtype PubMed ID
nsv832804 CNV Gain 17160897
dgv1938n71 CNV Gain 21882294
dgv1939n71 CNV Gain 21882294

Relevant External Links for RPL13AP3 Gene

HapMap Linkage Disequilibrium report
RPL13AP3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for RPL13AP3 Gene

Disorders for RPL13AP3 Gene

Relevant External Links for RPL13AP3

Genetic Association Database (GAD)
RPL13AP3
genes like me logo Genes that share disorders with RPL13AP3: view

No data available for UniProtKB/Swiss-Prot for RPL13AP3 Gene

Publications for RPL13AP3 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3
  2. Proteomic characterization of the human sperm nucleus. (PMID: 21630459) de Mateo S. … Oliva R. (Proteomics 2011) 3
  3. Systematic and quantitative assessment of the ubiquitin-modified proteome. (PMID: 21906983) Kim W. … Gygi S.P. (Mol. Cell 2011) 3
  4. Proteomic analysis of podocyte exosome-enriched fraction from normal human urine. (PMID: 23376485) Prunotto M. … Moll S. (J Proteomics 2013) 3
  5. Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan. (PMID: 23648065) Low S.K. … Nakamura Y. (Cancer Sci. 2013) 3

Products for RPL13AP3 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate RPL13AP3
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for RPL13AP3
    • Block miRNA regulation of RPL13AP3 using miScript Target Protectors

    Sources for RPL13AP3 Gene

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