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Aliases for RPL13AP21 Gene

Subcategory (RNA class) for RPL13AP21 Gene

lncRNA

Aliases for RPL13AP21 Gene

  • Ribosomal Protein L13a Pseudogene 21 2 3
  • RPL13A_10_1231 3
  • AC084878.1 5

External Ids for RPL13AP21 Gene

ORGUL Members for RPL13AP21 Gene

Previous GeneCards Identifiers for RPL13AP21 Gene

  • GC12M044685
  • GC12M046398

Summaries for RPL13AP21 Gene

GeneCards Summary for RPL13AP21 Gene

RPL13AP21 (Ribosomal Protein L13a Pseudogene 21) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for RPL13AP21 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL13AP21 Gene

Genomics for RPL13AP21 Gene

GeneHancer (GH) Regulatory Elements for RPL13AP21 Gene

Promoters and enhancers for RPL13AP21 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12I046071 Enhancer 1 Ensembl ENCODE 0.2 -67.6 -67617 1.1 RB1 RAD21 RFX5 ZNF335 ZNF207 ZNF143 BCLAF1 IKZF2 RUNX3 CREM GC12P046111 RPL13AP21
GH12I046100 Enhancer 0.5 ENCODE 0.2 -96.4 -96423 2 ZFHX2 KLF1 RFX1 EGR1 SP2 KLF17 GC12P046111 RPL13AP21
GH12I046043 Enhancer 0.3 ENCODE 0.3 -39.6 -39618 1.2 POU5F1 RPL13AP21 GC12P046111
GH12I046087 Enhancer 0.4 ENCODE 0.2 -83.3 -83334 0.9 MEIS2 SP7 GC12P046111 RPL13AP21
GH12I046089 Enhancer 0.2 ENCODE 0.2 -85.5 -85460 1.2 GC12P046111 RPL13AP21
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RPL13AP21 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPL13AP21 Gene

Genomic Locations for RPL13AP21 Gene
chr12:46,004,026-46,004,685
(GRCh38/hg38)
Size:
660 bases
Orientation:
Minus strand
chr12:46,397,809-46,398,468
(GRCh37/hg19)

Genomic View for RPL13AP21 Gene

Genes around RPL13AP21 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL13AP21 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL13AP21 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL13AP21 Gene

Proteins for RPL13AP21 Gene

Post-translational modifications for RPL13AP21 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL13AP21 Gene

Domains & Families for RPL13AP21 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL13AP21 Gene

Function for RPL13AP21 Gene

Phenotypes From GWAS Catalog for RPL13AP21 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL13AP21 Gene

Localization for RPL13AP21 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL13AP21 Gene

Pathways & Interactions for RPL13AP21 Gene

SuperPathways for RPL13AP21 Gene

No Data Available

Interacting Proteins for RPL13AP21 Gene

Gene Ontology (GO) - Biological Process for RPL13AP21 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL13AP21 Gene

Drugs & Compounds for RPL13AP21 Gene

No Compound Related Data Available

Transcripts for RPL13AP21 Gene

mRNA/cDNA for RPL13AP21 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPL13AP21 Gene

No ASD Table

Relevant External Links for RPL13AP21 Gene

GeneLoc Exon Structure for
RPL13AP21
ECgene alternative splicing isoforms for
RPL13AP21

Expression for RPL13AP21 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPL13AP21 Gene

mRNA differential expression in normal tissues according to GTEx for RPL13AP21 Gene

This gene is overexpressed in Testis (x53.0).

NURSA nuclear receptor signaling pathways regulating expression of RPL13AP21 Gene:

RPL13AP21
genes like me logo Genes that share expression patterns with RPL13AP21: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL13AP21 Gene

Orthologs for RPL13AP21 Gene

Evolution for RPL13AP21 Gene

ENSEMBL:
Gene Tree for RPL13AP21 (if available)
TreeFam:
Gene Tree for RPL13AP21 (if available)

No data available for Orthologs for RPL13AP21 Gene

Paralogs for RPL13AP21 Gene

No data available for Paralogs for RPL13AP21 Gene

Variants for RPL13AP21 Gene

Additional Variant Information for RPL13AP21 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL13AP21

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL13AP21 Gene

Disorders for RPL13AP21 Gene

Additional Disease Information for RPL13AP21

Genetic Association Database
(GAD)

No disorders were found for RPL13AP21 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL13AP21 Gene

Publications for RPL13AP21 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 58
  2. Hippocampal atrophy as a quantitative trait in a genome-wide association study identifying novel susceptibility genes for Alzheimer's disease. (PMID: 19668339) Potkin SG … Alzheimer's Disease Neuroimaging Initiative (PloS one 2009) 44 58

Products for RPL13AP21 Gene

Sources for RPL13AP21 Gene

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