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Aliases for RPL13AP21 Gene

Subcategory (RNA class) for RPL13AP21 Gene

lncRNA

Aliases for RPL13AP21 Gene

  • Ribosomal Protein L13a Pseudogene 21 2 3
  • RPL13A_10_1231 3
  • RP11-101K23.1 5

External Ids for RPL13AP21 Gene

ORGUL Members for RPL13AP21 Gene

Previous GeneCards Identifiers for RPL13AP21 Gene

  • GC12M044685
  • GC12M046398

Summaries for RPL13AP21 Gene

GeneCards Summary for RPL13AP21 Gene

RPL13AP21 (Ribosomal Protein L13a Pseudogene 21) is a Pseudogene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL13AP21 Gene

Genomics for RPL13AP21 Gene

Regulatory Elements for RPL13AP21 Gene

Enhancers for RPL13AP21 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12F045983 1.1 FANTOM5 ENCODE 16.5 +16.5 16533 9.8 MLX CREB3L1 ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 KNOP1P2 RPL13AP21 RACGAP1P SCAF11 LOC102723757 SLC38A4 SLC38A2 GC12P045991 GC12M045894
GH12F046263 0.2 ENCODE 16.2 -262.6 -262600 8.5 CREB3L1 MLX FEZF1 DMAP1 YY1 SLC30A9 ZNF416 ZNF143 ZNF548 ZNF263 KNOP1P2 ENSG00000257261 LOC102723757 RPL13AP21 LINC00938 SLC38A2 LOC105378248 ENSG00000274591
GH12F045615 0.9 Ensembl ENCODE 16.2 +389.0 389044 0.7 PKNOX1 INSM2 KLF17 FEZF1 ZNF2 ZEB1 ZNF302 ZNF366 FOS ZNF263 RPL13AP21 RACGAP1P ENSG00000257657 GC12P045658
GH12F045214 0.6 ENCODE 16.2 +786.6 786638 7.1 HDGF PKNOX1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 ZNF302 ZNF263 RACGAP1P RPL13AP21 PLEKHA8P1 ENSG00000278351
GH12F046043 0.9 ENCODE 0.3 -39.6 -39619 1.2 ATF3 POU5F1 CEBPG TRIM24 RPL13AP21 GC12P046111
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RPL13AP21 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPL13AP21 Gene

Chromosome:
12
Start:
46,004,026 bp from pter
End:
46,004,685 bp from pter
Size:
660 bases
Orientation:
Minus strand

Genomic View for RPL13AP21 Gene

Genes around RPL13AP21 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL13AP21 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL13AP21 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL13AP21 Gene

Proteins for RPL13AP21 Gene

Post-translational modifications for RPL13AP21 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL13AP21 Gene

Domains & Families for RPL13AP21 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL13AP21 Gene

Function for RPL13AP21 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL13AP21 Gene

Localization for RPL13AP21 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPL13AP21 Gene

Pathways & Interactions for RPL13AP21 Gene

SuperPathways for RPL13AP21 Gene

No Data Available

Interacting Proteins for RPL13AP21 Gene

Gene Ontology (GO) - Biological Process for RPL13AP21 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL13AP21 Gene

Transcripts for RPL13AP21 Gene

mRNA/cDNA for RPL13AP21 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPL13AP21 Gene

No ASD Table

Relevant External Links for RPL13AP21 Gene

GeneLoc Exon Structure for
RPL13AP21
ECgene alternative splicing isoforms for
RPL13AP21

Expression for RPL13AP21 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPL13AP21 Gene

mRNA differential expression in normal tissues according to GTEx for RPL13AP21 Gene

This gene is overexpressed in Testis (x53.0).

NURSA nuclear receptor signaling pathways regulating expression of RPL13AP21 Gene:

RPL13AP21
genes like me logo Genes that share expression patterns with RPL13AP21: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RPL13AP21 Gene

Orthologs for RPL13AP21 Gene

Evolution for RPL13AP21 Gene

ENSEMBL:
Gene Tree for RPL13AP21 (if available)
TreeFam:
Gene Tree for RPL13AP21 (if available)

No data available for Orthologs for RPL13AP21 Gene

Paralogs for RPL13AP21 Gene

No data available for Paralogs for RPL13AP21 Gene

Variants for RPL13AP21 Gene

Relevant External Links for RPL13AP21 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL13AP21

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL13AP21 Gene

Disorders for RPL13AP21 Gene

Relevant External Links for RPL13AP21

Genetic Association Database (GAD)
RPL13AP21

No disorders were found for RPL13AP21 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL13AP21 Gene

Publications for RPL13AP21 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64
  2. Hippocampal atrophy as a quantitative trait in a genome-wide association study identifying novel susceptibility genes for Alzheimer's disease. (PMID: 19668339) Potkin S.G. … Macciardi F. (PLoS ONE 2009) 46 64

Products for RPL13AP21 Gene

Sources for RPL13AP21 Gene

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