Free for academic non-profit institutions. Other users need a Commercial license

Aliases for RPL13AP20 Gene

Aliases for RPL13AP20 Gene

  • Ribosomal Protein L13a Pseudogene 20 2 3
  • RPL13A_9_1211 3
  • HCG27695 3

External Ids for RPL13AP20 Gene

Summaries for RPL13AP20 Gene

GeneCards Summary for RPL13AP20 Gene

RPL13AP20 (Ribosomal Protein L13a Pseudogene 20) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL13AP20 Gene

Genomics for RPL13AP20 Gene

Genomic Location for RPL13AP20 Gene

Start:
12,875,477 bp from pter
End:
12,876,136 bp from pter
Size:
660 bases
Orientation:
Plus strand

Genomic View for RPL13AP20 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RPL13AP20 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL13AP20 Gene

Regulatory Elements for RPL13AP20 Gene

Proteins for RPL13AP20 Gene

Post-translational modifications for RPL13AP20 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL13AP20 Gene

Domains for RPL13AP20 Gene

No data available for Gene Families , Protein Domains and UniProtKB/Swiss-Prot for RPL13AP20 Gene

Function for RPL13AP20 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for RPL13AP20 Gene

Localization for RPL13AP20 Gene

No data available for Gene Ontology (GO) - Cellular Components for RPL13AP20 Gene

Pathways for RPL13AP20 Gene

SuperPathways for RPL13AP20 Gene

No Data Available

Interacting Proteins for RPL13AP20 Gene

Gene Ontology (GO) - Biological Process for RPL13AP20 Gene

None

No data available for Pathways by source for RPL13AP20 Gene

Transcripts for RPL13AP20 Gene

mRNA/cDNA for RPL13AP20 Gene

(1) Additional mRNA sequences :
(51) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RPL13AP20 Gene

Ribosomal protein L13a pseudogene 20:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RPL13AP20 Gene

No ASD Table

Relevant External Links for RPL13AP20 Gene

GeneLoc Exon Structure for
RPL13AP20
ECgene alternative splicing isoforms for
RPL13AP20

Expression for RPL13AP20 Gene

mRNA expression in normal human tissues for RPL13AP20 Gene

Integrated Proteomics: protein expression from for RPL13AP20 Gene

SOURCE GeneReport for Unigene cluster for RPL13AP20 Gene Hs.631728

genes like me logo Genes that share expressions with RPL13AP20: view

Orthologs for RPL13AP20 Gene

This gene was present in the common ancestor of chordates.

Orthologs for RPL13AP20 Gene

Organism Taxonomy Gene Similarity Type Details
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.9223 36
Species with no ortholog for RPL13AP20:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RPL13AP20 Gene

ENSEMBL:
Gene Tree for RPL13AP20 (if available)
TreeFam:
Gene Tree for RPL13AP20 (if available)

Paralogs for RPL13AP20 Gene

No data available for Paralogs for RPL13AP20 Gene

Variants for RPL13AP20 Gene

Sequence variations from dbSNP and Humsavar for RPL13AP20 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type MAF
rs7966940 -- 12,874,921(+) caagt(C/G)atctg upstream-variant-2KB
rs10772608 -- 12,874,785(+) TCAAG(A/T)GATTC upstream-variant-2KB
rs10845659 -- 12,875,719(+) CCTCC(A/G)GGCCC nc-transcript-variant
rs11055119 -- 12,875,747(+) CAGAC(C/G)ATGCG nc-transcript-variant
rs11055120 -- 12,875,762(+) ATGCC(A/G)CCCCA nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for RPL13AP20 Gene

Variant ID Type Subtype PubMed ID
esv2745567 CNV Deletion 23290073

Relevant External Links for RPL13AP20 Gene

HapMap Linkage Disequilibrium report
RPL13AP20

Disorders for RPL13AP20 Gene

No disorders were found for RPL13AP20 Gene.

No data available for UniProtKB/Swiss-Prot for RPL13AP20 Gene

Publications for RPL13AP20 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3
  2. The sequence of the human genome. (PMID: 11181995) Venter J.C. … Zhu X. (Science 2001) 3

Products for RPL13AP20 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate RPL13AP20
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for RPL13AP20
    • Block miRNA regulation of RPL13AP20 using miScript Target Protectors

    Sources for RPL13AP20 Gene

    Back to Top

    Content