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Aliases for RPL13AP20 Gene

Aliases for RPL13AP20 Gene

  • Ribosomal Protein L13a Pseudogene 20 2 3 5
  • RPL13A_9_1211 3
  • HCG27695 3

External Ids for RPL13AP20 Gene

Previous GeneCards Identifiers for RPL13AP20 Gene

  • GC12P012903
  • GC12P013029
  • GC12P012798

Summaries for RPL13AP20 Gene

GeneCards Summary for RPL13AP20 Gene

RPL13AP20 (Ribosomal Protein L13a Pseudogene 20) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL13AP20 Gene

Genomics for RPL13AP20 Gene

Regulatory Elements for RPL13AP20 Gene

Enhancers for RPL13AP20 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12G012834 1.5 Ensembl ENCODE dbSUPER 14.4 -36.9 -36894 8.9 PKNOX1 SIN3A FEZF1 BRCA1 ZNF2 GTF3C2 ZNF121 GLIS2 GATA2 KLF7 DDX47 RPL13AP20 GPRC5A LOC100506248 MIR614 ENSG00000256011 LOC100506314 GPRC5D GC12P012833 RPL37AP9
GH12G012557 1.9 FANTOM5 Ensembl ENCODE dbSUPER 9.9 -314.4 -314363 7.0 FOXA2 PKNOX1 CREB3L1 ARNT WRNIP1 ARID4B SIN3A DMAP1 FEZF1 ZNF2 DDX47 CREBL2 LOC100506248 GPR19 RPL13AP20 CDKN1B ENSG00000255670 DUSP16 BCL2L14 PIR41199
GH12G012713 1.8 FANTOM5 ENCODE dbSUPER 10 -155.2 -155176 14.0 CREB3L1 AGO1 ZFP64 DMAP1 FEZF1 YY1 ZNF143 ZNF263 SP3 NFYC APOLD1 DDX47 GPR19 RPL13AP20 CDKN1B MANSC1 BORCS5 DUSP16 ENSG00000275560 LOC105369663
GH12G012356 1.4 ENCODE dbSUPER 10.5 -517.7 -517704 2.9 HDGF PKNOX1 WRNIP1 ARID4B SIN3A DMAP1 YY1 ZNF143 ZNF207 FOS DDX47 LRP6 LOC100506248 RPL13AP20 LOH12CR2 MANSC1 BORCS5 PIR62067
GH12G012265 1.2 ENCODE 9.9 -608.9 -608857 2.9 CREB3L1 FEZF1 DMAP1 YY1 SLC30A9 ZNF416 ZNF143 ZNF548 ZNF263 SP3 DDX47 LRP6 LOC100506248 ENSG00000255670 LOH12CR2 RPL13AP20 GPR19 GC12P012248
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RPL13AP20 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPL13AP20 Gene

Chromosome:
12
Start:
12,875,477 bp from pter
End:
12,876,136 bp from pter
Size:
660 bases
Orientation:
Plus strand

Genomic View for RPL13AP20 Gene

Genes around RPL13AP20 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL13AP20 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL13AP20 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL13AP20 Gene

Proteins for RPL13AP20 Gene

Post-translational modifications for RPL13AP20 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL13AP20 Gene

Domains & Families for RPL13AP20 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL13AP20 Gene

Function for RPL13AP20 Gene

Phenotypes for RPL13AP20 Gene

GenomeRNAi human phenotypes for RPL13AP20:
genes like me logo Genes that share phenotypes with RPL13AP20: view

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL13AP20 Gene

Localization for RPL13AP20 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPL13AP20 Gene

Pathways & Interactions for RPL13AP20 Gene

SuperPathways for RPL13AP20 Gene

No Data Available

Interacting Proteins for RPL13AP20 Gene

Gene Ontology (GO) - Biological Process for RPL13AP20 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL13AP20 Gene

Drugs & Compounds for RPL13AP20 Gene

No Compound Related Data Available

Transcripts for RPL13AP20 Gene

mRNA/cDNA for RPL13AP20 Gene

(1) Additional mRNA sequences :
(51) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RPL13AP20 Gene

Ribosomal protein L13a pseudogene 20:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPL13AP20 Gene

No ASD Table

Relevant External Links for RPL13AP20 Gene

GeneLoc Exon Structure for
RPL13AP20
ECgene alternative splicing isoforms for
RPL13AP20

Expression for RPL13AP20 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPL13AP20 Gene

Protein differential expression in normal tissues from HIPED for RPL13AP20 Gene

This gene is overexpressed in Heart (38.0) and Skin (31.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from MOPED for RPL13AP20 Gene



Protein tissue co-expression partners for RPL13AP20 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPL13AP20 Gene:

RPL13AP20

SOURCE GeneReport for Unigene cluster for RPL13AP20 Gene:

Hs.631728
genes like me logo Genes that share expression patterns with RPL13AP20: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL13AP20 Gene

Orthologs for RPL13AP20 Gene

This gene was present in the common ancestor of chordates.

Orthologs for RPL13AP20 Gene

Organism Taxonomy Gene Similarity Type Details
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.9223 34
Species where no ortholog for RPL13AP20 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RPL13AP20 Gene

ENSEMBL:
Gene Tree for RPL13AP20 (if available)
TreeFam:
Gene Tree for RPL13AP20 (if available)

Paralogs for RPL13AP20 Gene

No data available for Paralogs for RPL13AP20 Gene

Variants for RPL13AP20 Gene

Sequence variations from dbSNP and Humsavar for RPL13AP20 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs1001412204 -- 12,876,064(+) GAAAA(C/T)TGACA nc-transcript-variant
rs1002700716 -- 12,874,776(+) CTCCC(A/C/G)GATTC upstream-variant-2KB
rs1003087100 -- 12,875,143(+) ACTCA(C/T)AGCGG upstream-variant-2KB
rs1003416570 -- 12,873,724(+) CATAC(A/C)TTTGT upstream-variant-2KB
rs1003660899 -- 12,874,119(+) AGGCC(A/G)GGCTG upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for RPL13AP20 Gene

Variant ID Type Subtype PubMed ID
esv2745567 CNV deletion 23290073
nsv1046355 CNV loss 25217958
nsv973030 CNV duplication 23825009

Relevant External Links for RPL13AP20 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL13AP20

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RPL13AP20 Gene

Disorders for RPL13AP20 Gene

Relevant External Links for RPL13AP20

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RPL13AP20

No disorders were found for RPL13AP20 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL13AP20 Gene

Publications for RPL13AP20 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64
  2. The sequence of the human genome. (PMID: 11181995) Venter J.C. … Zhu X. (Science 2001) 3 64

Products for RPL13AP20 Gene

Sources for RPL13AP20 Gene

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