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Aliases for RPL13AP15 Gene

Subcategory (RNA class) for RPL13AP15 Gene

lncRNA

Aliases for RPL13AP15 Gene

  • Ribosomal Protein L13a Pseudogene 15 2 3
  • RPL13A_4_746 3
  • AL022722.1 5

External Ids for RPL13AP15 Gene

ORGUL Members for RPL13AP15 Gene

Previous GeneCards Identifiers for RPL13AP15 Gene

  • GC06U901630
  • GC06M119590

Summaries for RPL13AP15 Gene

GeneCards Summary for RPL13AP15 Gene

RPL13AP15 (Ribosomal Protein L13a Pseudogene 15) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for RPL13AP15 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL13AP15 Gene

Genomics for RPL13AP15 Gene

GeneHancer (GH) Regulatory Elements for RPL13AP15 Gene

Promoters and enhancers for RPL13AP15 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I119345 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 5 -78.8 -78771 5.7 MLX ZFP64 FEZF1 DMAP1 IRF4 YY1 SLC30A9 E2F8 ZNF143 SP3 MAN1A1 GC06P119350 PIR63066 MCM9 RPL13AP15
GH06I119311 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 5.2 -44.3 -44295 5.2 HDGF PKNOX1 SMAD1 ARNT ZNF766 ZNF207 ZNF592 MEF2D SMARCA4 NBN MAN1A1 RPL13AP15 MCM9 RNU6-194P GC06M119272
GH06I119307 Enhancer 1.5 Ensembl ENCODE dbSUPER 5.2 -39.1 -39149 2.6 PKNOX1 FOXA2 ARNT ARID4B FEZF1 ZNF2 YY1 ZNF766 E2F8 FOS MCM9 MAN1A1 RPL13AP15 RNU6-194P GC06M119272
GH06I119260 Enhancer 1.2 Ensembl ENCODE 5.3 +8.2 8195 1.8 PKNOX1 CLOCK FOXA2 MLX ZFP64 ARID4B NEUROD1 ETS1 YY1 SLC30A9 RNU6-194P CEP85L RPL13AP15 GC06P119180 MAN1A1
GH06I119339 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 4 -71.0 -70992 1.9 HDAC1 MEIS2 ATF1 PKNOX1 ZNF449 CEBPG EBF1 ZIC2 RELA CTBP1 RPL13AP15 MAN1A1 PIR63066 GC06P119328
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RPL13AP15 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPL13AP15 Gene

Genomic Locations for RPL13AP15 Gene
chr6:119,269,133-119,269,714
(GRCh38/hg38)
Size:
582 bases
Orientation:
Minus strand
chr6:119,590,298-119,590,879
(GRCh37/hg19)

Genomic View for RPL13AP15 Gene

Genes around RPL13AP15 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL13AP15 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL13AP15 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL13AP15 Gene

Proteins for RPL13AP15 Gene

Post-translational modifications for RPL13AP15 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL13AP15 Gene

Domains & Families for RPL13AP15 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL13AP15 Gene

Function for RPL13AP15 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL13AP15 Gene

Localization for RPL13AP15 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL13AP15 Gene

Pathways & Interactions for RPL13AP15 Gene

SuperPathways for RPL13AP15 Gene

No Data Available

Interacting Proteins for RPL13AP15 Gene

Gene Ontology (GO) - Biological Process for RPL13AP15 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL13AP15 Gene

Drugs & Compounds for RPL13AP15 Gene

No Compound Related Data Available

Transcripts for RPL13AP15 Gene

mRNA/cDNA for RPL13AP15 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPL13AP15 Gene

No ASD Table

Relevant External Links for RPL13AP15 Gene

GeneLoc Exon Structure for
RPL13AP15
ECgene alternative splicing isoforms for
RPL13AP15

Expression for RPL13AP15 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPL13AP15 Gene

mRNA differential expression in normal tissues according to GTEx for RPL13AP15 Gene

This gene is overexpressed in Whole Blood (x5.1).

NURSA nuclear receptor signaling pathways regulating expression of RPL13AP15 Gene:

RPL13AP15
genes like me logo Genes that share expression patterns with RPL13AP15: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL13AP15 Gene

Orthologs for RPL13AP15 Gene

Evolution for RPL13AP15 Gene

ENSEMBL:
Gene Tree for RPL13AP15 (if available)
TreeFam:
Gene Tree for RPL13AP15 (if available)

No data available for Orthologs for RPL13AP15 Gene

Paralogs for RPL13AP15 Gene

No data available for Paralogs for RPL13AP15 Gene

Variants for RPL13AP15 Gene

Additional Variant Information for RPL13AP15 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL13AP15

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL13AP15 Gene

Disorders for RPL13AP15 Gene

Additional Disease Information for RPL13AP15

Genetic Association Database
(GAD)

No disorders were found for RPL13AP15 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL13AP15 Gene

Publications for RPL13AP15 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 58
  2. Genome-wide association study reveals multiple loci associated with primary tooth development during infancy. (PMID: 20195514) Pillas D … Jarvelin MR (PLoS genetics 2010) 44 58
  3. Host determinants of HIV-1 control in African Americans. (PMID: 20205591) Pelak K … National Institute of Allergy and Infectious Diseases Center for HIV/AIDS Vaccine Immunology (CHAVI) (The Journal of infectious diseases 2010) 44 58
  4. A genome-wide association study for blood lipid phenotypes in the Framingham Heart Study. (PMID: 17903299) Kathiresan S … Cupples LA (BMC medical genetics 2007) 44 58
  5. Genome-wide association of echocardiographic dimensions, brachial artery endothelial function and treadmill exercise responses in the Framingham Heart Study. (PMID: 17903301) Vasan RS … Benjamin EJ (BMC medical genetics 2007) 44 58

Products for RPL13AP15 Gene

Sources for RPL13AP15 Gene

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