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Aliases for RPL13AP11 Gene

Subcategory (RNA class) for RPL13AP11 Gene

lncRNA

Aliases for RPL13AP11 Gene

  • Ribosomal Protein L13a Pseudogene 11 2 3
  • RPL13A_1_152 3
  • RP11-494K3.2 5

External Ids for RPL13AP11 Gene

ORGUL Members for RPL13AP11 Gene

Previous GeneCards Identifiers for RPL13AP11 Gene

  • GC01U902378

Summaries for RPL13AP11 Gene

GeneCards Summary for RPL13AP11 Gene

RPL13AP11 (Ribosomal Protein L13a Pseudogene 11) is a Pseudogene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL13AP11 Gene

Genomics for RPL13AP11 Gene

Regulatory Elements for RPL13AP11 Gene

Enhancers for RPL13AP11 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F205120 0.7 ENCODE 10.4 +175.2 175191 2.9 CREB3L1 ZFP64 FEZF1 DMAP1 YY1 ZNF143 ZNF263 SP3 TBX21 MEF2D GYG2P2 ELK4 MDM4 TMCC2 PPP1R15B LOC100420878 DSTYK LOC101929459 CNTN2 RPL13AP11
GH01F205210 0.2 ENCODE 10.3 +264.9 264867 2.8 CREB3L1 ZFP64 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 NFYC TBX21 GYG2P2 MDM4 ELK4 DSTYK TMCC2 PPP1R15B CNTN2 LOC100420878 RBBP5 RPL13AP11
GH01F205241 0.7 Ensembl 10.3 +295.4 295394 0.4 ZNF133 SIN3A GLI4 DMAP1 ZNF48 ZNF121 GLIS2 KLF7 ZNF263 MXD4 GYG2P2 ELK4 MDM4 RPL13AP11 LOC101929459 PIR41674
GH01F204941 0.2 ENCODE 0.8 -4.7 -4730 0.2 CTCF ZNF654 MAX TRIM22 ZNF384 REST RAD21 MITF KLF16 ZNF143 CNTN2 NFASC LRRN2 RPL13AP11
GH01F204933 0.3 FANTOM5 0.4 -13.1 -13141 0.1 CNTN2 TMCC2 NFASC LRRN2 TMEM81 RPL13AP11
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RPL13AP11 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPL13AP11 Gene

Chromosome:
1
Start:
204,946,607 bp from pter
End:
204,947,169 bp from pter
Size:
563 bases
Orientation:
Plus strand

Genomic View for RPL13AP11 Gene

Genes around RPL13AP11 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL13AP11 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL13AP11 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL13AP11 Gene

Proteins for RPL13AP11 Gene

Post-translational modifications for RPL13AP11 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL13AP11 Gene

Domains & Families for RPL13AP11 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL13AP11 Gene

Function for RPL13AP11 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL13AP11 Gene

Localization for RPL13AP11 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPL13AP11 Gene

Pathways & Interactions for RPL13AP11 Gene

SuperPathways for RPL13AP11 Gene

No Data Available

Interacting Proteins for RPL13AP11 Gene

Gene Ontology (GO) - Biological Process for RPL13AP11 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL13AP11 Gene

Transcripts for RPL13AP11 Gene

mRNA/cDNA for RPL13AP11 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPL13AP11 Gene

No ASD Table

Relevant External Links for RPL13AP11 Gene

GeneLoc Exon Structure for
RPL13AP11
ECgene alternative splicing isoforms for
RPL13AP11

Expression for RPL13AP11 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPL13AP11 Gene

mRNA differential expression in normal tissues according to GTEx for RPL13AP11 Gene

This gene is overexpressed in Kidney - Cortex (x4.4).

NURSA nuclear receptor signaling pathways regulating expression of RPL13AP11 Gene:

RPL13AP11
genes like me logo Genes that share expression patterns with RPL13AP11: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RPL13AP11 Gene

Orthologs for RPL13AP11 Gene

Evolution for RPL13AP11 Gene

ENSEMBL:
Gene Tree for RPL13AP11 (if available)
TreeFam:
Gene Tree for RPL13AP11 (if available)

No data available for Orthologs for RPL13AP11 Gene

Paralogs for RPL13AP11 Gene

No data available for Paralogs for RPL13AP11 Gene

Variants for RPL13AP11 Gene

Relevant External Links for RPL13AP11 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL13AP11

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL13AP11 Gene

Disorders for RPL13AP11 Gene

Relevant External Links for RPL13AP11

Genetic Association Database (GAD)
RPL13AP11

No disorders were found for RPL13AP11 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL13AP11 Gene

Publications for RPL13AP11 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64

Products for RPL13AP11 Gene

Sources for RPL13AP11 Gene

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