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Aliases for RPL13AP11 Gene

Subcategory (RNA class) for RPL13AP11 Gene

lncRNA

Aliases for RPL13AP11 Gene

  • Ribosomal Protein L13a Pseudogene 11 2 3
  • RPL13A_1_152 3
  • AL391822.1 5

External Ids for RPL13AP11 Gene

ORGUL Members for RPL13AP11 Gene

Previous GeneCards Identifiers for RPL13AP11 Gene

  • GC01U902378

Summaries for RPL13AP11 Gene

GeneCards Summary for RPL13AP11 Gene

RPL13AP11 (Ribosomal Protein L13a Pseudogene 11) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for RPL13AP11 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL13AP11 Gene

Genomics for RPL13AP11 Gene

GeneHancer (GH) Regulatory Elements for RPL13AP11 Gene

Promoters and enhancers for RPL13AP11 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I204945 Enhancer 0.7 dbSUPER 550.8 +1.3 1298 6.7 MXI1 TAL1 GLI4 BMI1 ZIC2 ZBTB7B ZFHX2 NFATC1 EGR2 RFX1 RPL13AP11 MDM4 ELK4 PPP1R15B GC01P205019 NFASC
GH01I205120 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE 19.5 +175.2 175190 2.9 CLOCK ZFP64 FEZF1 DMAP1 IRF4 YY1 ZNF213 E2F8 ZNF143 SP3 RBBP5 MDM4 PPP1R15B ELK4 TMCC2 DSTYK RPL13AP11 NFASC SNRPGP10 LOC101929459
GH01I205225 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 13.2 +281.7 281691 4.6 HDGF PKNOX1 SMAD1 ARNT SIN3A FEZF1 ZNF2 ZBTB7B ZNF143 ZNF548 TMCC2 MDM4 ELK4 PPP1R15B DSTYK SNRPGP10 RPL13AP11 ENSG00000240219 ENSG00000226330 LOC101929459
GH01I204511 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 10.3 -429.5 -429527 11.9 CLOCK ZFP64 FEZF1 DMAP1 YBX1 YY1 SLC30A9 ZNF213 E2F8 ZNF416 MDM4 ZC3H11A SNRPE ZBED6 PPP1R15B PIK3C2B NFASC SNRPGP10 SOX13 RBBP5
GH01I205210 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE 10.9 +264.9 264866 2.8 ZFP64 DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF143 ZNF263 SP3 NFYC DSTYK MDM4 ELK4 PPP1R15B NFASC TMCC2 CNTN2 RPL13AP11 LOC100420878 LOC101929459
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RPL13AP11 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPL13AP11 Gene

Genomic Locations for RPL13AP11 Gene
chr1:204,946,607-204,947,169
(GRCh38/hg38)
Size:
563 bases
Orientation:
Plus strand
chr1:204,915,735-204,916,297
(GRCh37/hg19)

Genomic View for RPL13AP11 Gene

Genes around RPL13AP11 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL13AP11 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL13AP11 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL13AP11 Gene

Proteins for RPL13AP11 Gene

Post-translational modifications for RPL13AP11 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL13AP11 Gene

Domains & Families for RPL13AP11 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL13AP11 Gene

Function for RPL13AP11 Gene

Phenotypes From GWAS Catalog for RPL13AP11 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL13AP11 Gene

Localization for RPL13AP11 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL13AP11 Gene

Pathways & Interactions for RPL13AP11 Gene

SuperPathways for RPL13AP11 Gene

No Data Available

Interacting Proteins for RPL13AP11 Gene

Gene Ontology (GO) - Biological Process for RPL13AP11 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL13AP11 Gene

Drugs & Compounds for RPL13AP11 Gene

No Compound Related Data Available

Transcripts for RPL13AP11 Gene

mRNA/cDNA for RPL13AP11 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPL13AP11 Gene

No ASD Table

Relevant External Links for RPL13AP11 Gene

GeneLoc Exon Structure for
RPL13AP11
ECgene alternative splicing isoforms for
RPL13AP11

Expression for RPL13AP11 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPL13AP11 Gene

mRNA differential expression in normal tissues according to GTEx for RPL13AP11 Gene

This gene is overexpressed in Kidney - Cortex (x4.4).

NURSA nuclear receptor signaling pathways regulating expression of RPL13AP11 Gene:

RPL13AP11
genes like me logo Genes that share expression patterns with RPL13AP11: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL13AP11 Gene

Orthologs for RPL13AP11 Gene

Evolution for RPL13AP11 Gene

ENSEMBL:
Gene Tree for RPL13AP11 (if available)
TreeFam:
Gene Tree for RPL13AP11 (if available)

No data available for Orthologs for RPL13AP11 Gene

Paralogs for RPL13AP11 Gene

No data available for Paralogs for RPL13AP11 Gene

Variants for RPL13AP11 Gene

Additional Variant Information for RPL13AP11 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL13AP11

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL13AP11 Gene

Disorders for RPL13AP11 Gene

Additional Disease Information for RPL13AP11

Genetic Association Database
(GAD)

No disorders were found for RPL13AP11 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL13AP11 Gene

Publications for RPL13AP11 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 58

Products for RPL13AP11 Gene

Sources for RPL13AP11 Gene

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