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Aliases for RPL12 Gene

Aliases for RPL12 Gene

  • Ribosomal Protein L12 2 3
  • 60S Ribosomal Protein L12 3
  • L12 3

External Ids for RPL12 Gene

Summaries for RPL12 Gene

Entrez Gene Summary for RPL12 Gene

  • Ribosomes, the organelles that catalyze protein synthesis, consist of a small 40S subunit and a large 60S subunit. Together these subunits are composed of 4 RNA species and approximately 80 structurally distinct proteins. This gene encodes a ribosomal protein that is a component of the 60S subunit. The protein belongs to the L11P family of ribosomal proteins. It is located in the cytoplasm. The protein binds directly to the 26S rRNA. This gene is co-transcribed with the U65 snoRNA, which is located in its fourth intron. As is typical for genes encoding ribosomal proteins, there are multiple processed pseudogenes of this gene dispersed through the genome. [provided by RefSeq, Jul 2008]

GeneCards Summary for RPL12 Gene

RPL12 (Ribosomal Protein L12) is a Protein Coding gene. Among its related pathways are Disease and Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein. GO annotations related to this gene include RNA binding and structural constituent of ribosome.

UniProtKB/Swiss-Prot for RPL12 Gene

  • Binds directly to 26S ribosomal RNA.

Gene Wiki entry for RPL12 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL12 Gene

Genomics for RPL12 Gene

Genomic Location for RPL12 Gene

Start:
127,447,674 bp from pter
End:
127,451,432 bp from pter
Size:
3,759 bases
Orientation:
Minus strand

Genomic View for RPL12 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RPL12 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL12 Gene

Regulatory Elements for RPL12 Gene

Proteins for RPL12 Gene

  • Protein details for RPL12 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P30050-RL12_HUMAN
    Recommended name:
    60S ribosomal protein L12
    Protein Accession:
    P30050
    Secondary Accessions:
    • Q5VVV2
    • Q6PB27

    Protein attributes for RPL12 Gene

    Size:
    165 amino acids
    Molecular mass:
    17819 Da
    Quaternary structure:
    No Data Available

    Three dimensional structures from OCA and Proteopedia for RPL12 Gene

    Alternative splice isoforms for RPL12 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for RPL12 Gene

Proteomics data for RPL12 Gene at MOPED

Post-translational modifications for RPL12 Gene

  • Modification sites at PhosphoSitePlus
  • Ubiquitination at Lys48, Lys61, Lys83, Lys99, and Lys130

Other Protein References for RPL12 Gene

ENSEMBL proteins:
Reactome Protein details:
REFSEQ proteins:

No data available for DME Specific Peptides for RPL12 Gene

Domains for RPL12 Gene

Gene Families for RPL12 Gene

HGNC:
  • RPL :L ribosomal proteins

Protein Domains for RPL12 Gene

UniProtKB/Swiss-Prot:

RL12_HUMAN
Family:
  • Belongs to the ribosomal protein L11P family.:
    • P30050
genes like me logo Genes that share domains with RPL12: view

Function for RPL12 Gene

Molecular function for RPL12 Gene

GENATLAS Biochemistry: 60S ribosomal protein L12
UniProtKB/Swiss-Prot Function: Binds directly to 26S ribosomal RNA.

Gene Ontology (GO) - Molecular Function for RPL12 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003735 structural constituent of ribosome NAS 12962325
GO:0005515 protein binding IPI 22314232
GO:0044822 poly(A) RNA binding IDA 22681889
genes like me logo Genes that share ontologies with RPL12: view
genes like me logo Genes that share phenotypes with RPL12: view

No data available for Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targeting and HOMER Transcription for RPL12 Gene

Localization for RPL12 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for RPL12 Gene COMPARTMENTS Subcellular localization image for RPL12 gene
Compartment Confidence
cytosol 5
chloroplast 2

Gene Ontology (GO) - Cellular Components for RPL12 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005829 cytosol TAS --
GO:0005840 ribosome --
GO:0005925 focal adhesion IDA 21423176
GO:0016020 membrane IDA 19946888
GO:0022625 cytosolic large ribosomal subunit IDA 12962325
genes like me logo Genes that share ontologies with RPL12: view

Pathways for RPL12 Gene

genes like me logo Genes that share pathways with RPL12: view

Pathways by source for RPL12 Gene

1 GeneGo (Thomson Reuters Life Sciences Research) pathway for RPL12 Gene
1 BioSystems pathway for RPL12 Gene

Gene Ontology (GO) - Biological Process for RPL12 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay TAS --
GO:0006412 translation TAS --
GO:0006413 translational initiation TAS --
GO:0006414 translational elongation TAS --
GO:0006415 translational termination TAS --
genes like me logo Genes that share ontologies with RPL12: view

Transcripts for RPL12 Gene

Unigene Clusters for RPL12 Gene

Ribosomal protein L12:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RPL12 Gene

No ASD Table

Relevant External Links for RPL12 Gene

GeneLoc Exon Structure for
RPL12
ECgene alternative splicing isoforms for
RPL12

Expression for RPL12 Gene

mRNA expression in normal human tissues for RPL12 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for RPL12 Gene

SOURCE GeneReport for Unigene cluster for RPL12 Gene Hs.408054

genes like me logo Genes that share expressions with RPL12: view

Orthologs for RPL12 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for RPL12 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia RPL12 37
  • 100 (a)
OneToMany
RPL12 37
  • 100 (a)
OneToMany
cow
(Bos Taurus)
Mammalia RPL12 36
  • 91.52 (n)
  • 100 (a)
RPL12 37
  • 100 (a)
OneToMany
RPL12 37
  • 100 (a)
OneToMany
dog
(Canis familiaris)
Mammalia -- 37
  • 66 (a)
OneToMany
-- 37
  • 85 (a)
OneToMany
-- 37
  • 81 (a)
OneToMany
RPL12 36
  • 93.33 (n)
  • 100 (a)
RPL12 37
  • 86 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Rpl12 36
  • 89.49 (n)
  • 99.39 (a)
Rpl12 16
Rpl12 37
  • 99 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia -- 37
  • 95 (a)
OneToMany
-- 37
  • 82 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia RPL12 37
  • 96 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia LOC102555453 36
  • 90.1 (n)
  • 99.39 (a)
chicken
(Gallus gallus)
Aves RPL12 36
  • 81.21 (n)
  • 95.15 (a)
RPL12 37
  • 95 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia RPL12 37
  • 83 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia rpl12-prov 36
tropical clawed frog
(Silurana tropicalis)
Amphibia rpl12 36
  • 80.61 (n)
  • 94.77 (a)
Str.17078 36
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.8947 36
zebrafish
(Danio rerio)
Actinopterygii Dr.24686 36
rpl12 36
  • 78.73 (n)
  • 90.8 (a)
rpl12 37
  • 90 (a)
OneToOne
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP010065 36
  • 72.36 (n)
  • 81.71 (a)
fruit fly
(Drosophila melanogaster)
Insecta RpL12 36
  • 70.12 (n)
  • 79.88 (a)
RpL12 37
  • 79 (a)
OneToOne
RpL12 38
  • 79 (a)
worm
(Caenorhabditis elegans)
Secernentea rpl-12 36
  • 69.11 (n)
  • 73.78 (a)
rpl-12 37
  • 73 (a)
OneToOne
rpl-12 38
  • 73 (a)
A. gosspyii yeast
(Ashbya gossypii)
Saccharomycetes AGOS_AAR134W 36
  • 66.05 (n)
  • 68.1 (a)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes RPL12A 36
  • 66.67 (n)
  • 71.17 (a)
RPL12A 37
  • 70 (a)
OneToMany
RPL12B 37
  • 70 (a)
OneToMany
K. lactis yeast
(Kluyveromyces lactis)
Saccharomycetes KLLA0A01903g 36
  • 64.83 (n)
  • 67.48 (a)
Alicante grape
(Vitis vinifera)
eudicotyledons Vvi.1323 36
soybean
(Glycine max)
eudicotyledons Gma.11290 36
thale cress
(Arabidopsis thaliana)
eudicotyledons AT2G37190 36
  • 62.58 (n)
  • 69.94 (a)
barley
(Hordeum vulgare)
Liliopsida Hv.656 36
rice
(Oryza sativa)
Liliopsida Os04g0598200 36
  • 64.04 (n)
  • 67.88 (a)
bread mold
(Neurospora crassa)
Ascomycetes NCU01317 36
  • 65.03 (n)
  • 71.78 (a)
fission yeast
(Schizosaccharomyces pombe)
Schizosaccharomycetes rpl1201 36
  • 64.83 (n)
  • 71.78 (a)
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.3108 36
sea squirt
(Ciona savignyi)
Ascidiacea CSA.8009 37
  • 75 (a)
OneToOne
Species with no ortholog for RPL12:
  • Actinobacteria (Mycobacterium tuberculosis)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • beta proteobacteria (Neisseria meningitidis)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for RPL12 Gene

ENSEMBL:
Gene Tree for RPL12 (if available)
TreeFam:
Gene Tree for RPL12 (if available)

Paralogs for RPL12 Gene

Selected SIMAP similar genes for RPL12 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with RPL12: view

No data available for Paralogs for RPL12 Gene

Variants for RPL12 Gene

Sequence variations from dbSNP and Humsavar for RPL12 Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type MAF
rs1139400 -- 127,447,832(-) GGGCC(A/G)CCCAG intron-variant
rs3203469 -- 127,447,978(-) TTAAA(A/G)AGATC missense, reference
rs111512199 -- 127,447,982(+) TCTTT(A/G/T)ATGGT synonymous-codon, reference
rs112361216 -- 127,447,892(+) TCCAC(A/G)GCACC synonymous-codon, reference
rs140572425 -- 127,447,877(+) CTTAC(A/G)GCTGG reference, synonymous-codon

Relevant External Links for RPL12 Gene

HapMap Linkage Disequilibrium report
RPL12

No data available for Structural Variations from Database of Genomic Variants (DGV) for RPL12 Gene

Disorders for RPL12 Gene

Relevant External Links for RPL12

Genetic Association Database (GAD)
RPL12
Human Genome Epidemiology (HuGE) Navigator
RPL12
genes like me logo Genes that share disorders with RPL12: view

No data available for UniProtKB/Swiss-Prot for RPL12 Gene

Publications for RPL12 Gene

  1. The primary structure of human ribosomal protein L12. (PMID: 8441690) Chu W. … Burns D.K. (Nucleic Acids Res. 1993) 2 3 4 23
  2. DNA sequence and analysis of human chromosome 9. (PMID: 15164053) Humphray S.J. … Dunham I. (Nature 2004) 3 4
  3. A probability-based approach for high-throughput protein phosphorylation analysis and site localization. (PMID: 16964243) Beausoleil S.A. … Gygi S.P. (Nat. Biotechnol. 2006) 3 4
  4. Ribosomal protein L12 uses a distinct nuclear import pathway mediated by importin 11. (PMID: 11809816) Plafker S.M. … Macara I.G. (Mol. Cell. Biol. 2002) 3 23
  5. Follow-up association studies of chromosome region 9q and nonsyndromic cleft lip/palate. (PMID: 20583170) Letra A. … Vieira A.R. (Am. J. Med. Genet. A 2010) 3 49

Products for RPL12 Gene

Sources for RPL12 Gene

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