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Aliases for RPL10A Gene

Aliases for RPL10A Gene

  • Ribosomal Protein L10a 2 3 5
  • Neural Precursor Cell Expressed Developmentally Down-Regulated Protein 6 3 4
  • Csa-19 3 4
  • NEDD-6 3 4
  • NEDD6 3 4
  • CSA19 3
  • L10a 3

External Ids for RPL10A Gene

Previous HGNC Symbols for RPL10A Gene

  • NEDD6

Previous GeneCards Identifiers for RPL10A Gene

  • GC06P035438
  • GC06P035483
  • GC06P035544
  • GC06P035156
  • GC06P035582
  • GC06P035784
  • GC06P036309
  • GC06P037295
  • GC06P035652
  • GC06P035663

Summaries for RPL10A Gene

Entrez Gene Summary for RPL10A Gene

  • Ribosomes, the organelles that catalyze protein synthesis, consist of a small 40S subunit and a large 60S subunit. Together these subunits are composed of 4 RNA species and approximately 80 structurally distinct proteins. This gene encodes a ribosomal protein that is a component of the 60S subunit. The protein belongs to the L1P family of ribosomal proteins. It is located in the cytoplasm. The expression of this gene is downregulated in the thymus by cyclosporin-A (CsA), an immunosuppressive drug. Studies in mice have shown that the expression of the ribosomal protein L10a gene is downregulated in neural precursor cells during development. This gene previously was referred to as NEDD6 (neural precursor cell expressed, developmentally downregulated 6), but it has been renamed RPL10A (ribosomal protein 10a). As is typical for genes encoding ribosomal proteins, there are multiple processed pseudogenes of this gene dispersed through the genome. [provided by RefSeq, Jul 2008]

GeneCards Summary for RPL10A Gene

RPL10A (Ribosomal Protein L10a) is a Protein Coding gene. Diseases associated with RPL10A include myopathy, lactic acidosis, and sideroblastic anemia and bowen-conradi syndrome. Among its related pathways are Gene Expression and Metabolism. GO annotations related to this gene include poly(A) RNA binding and structural constituent of ribosome.

Gene Wiki entry for RPL10A Gene

No data available for UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL10A Gene

Genomics for RPL10A Gene

Regulatory Elements for RPL10A Gene

Promoters for RPL10A Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around RPL10A on UCSC Golden Path with GeneCards custom track

Genomic Location for RPL10A Gene

Chromosome:
6
Start:
35,468,401 bp from pter
End:
35,470,785 bp from pter
Size:
2,385 bases
Orientation:
Plus strand

Genomic View for RPL10A Gene

Genes around RPL10A on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL10A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL10A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL10A Gene

Proteins for RPL10A Gene

  • Protein details for RPL10A Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P62906-RL10A_HUMAN
    Recommended name:
    60S ribosomal protein L10a
    Protein Accession:
    P62906
    Secondary Accessions:
    • B2R801
    • P52859
    • P53025
    • Q5TZT6
    • Q8J013

    Protein attributes for RPL10A Gene

    Size:
    217 amino acids
    Molecular mass:
    24831 Da
    Quaternary structure:
    No Data Available

    Three dimensional structures from OCA and Proteopedia for RPL10A Gene

neXtProt entry for RPL10A Gene

Proteomics data for RPL10A Gene at MOPED

Post-translational modifications for RPL10A Gene

  • Ubiquitination at Lys 106, Lys 130, and Lys 133
  • Modification sites at PhosphoSitePlus

Other Protein References for RPL10A Gene

ENSEMBL proteins:
REFSEQ proteins:

Antibody Products

No data available for DME Specific Peptides for RPL10A Gene

Domains & Families for RPL10A Gene

Gene Families for RPL10A Gene

Suggested Antigen Peptide Sequences for RPL10A Gene

Graphical View of Domain Structure for InterPro Entry

P62906

UniProtKB/Swiss-Prot:

RL10A_HUMAN :
  • Belongs to the ribosomal protein L1P family.
Family:
  • Belongs to the ribosomal protein L1P family.
genes like me logo Genes that share domains with RPL10A: view

Function for RPL10A Gene

Molecular function for RPL10A Gene

GENATLAS Biochemistry:
60S ribosomal protein L10A

Gene Ontology (GO) - Molecular Function for RPL10A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 24725412
genes like me logo Genes that share ontologies with RPL10A: view
genes like me logo Genes that share phenotypes with RPL10A: view

Animal Model Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for RPL10A Gene

Localization for RPL10A Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for RPL10A Gene COMPARTMENTS Subcellular localization image for RPL10A gene
Compartment Confidence
cytosol 5
extracellular 5
nucleus 5
chloroplast 3
mitochondrion 3
cytoskeleton 1
endoplasmic reticulum 1
plasma membrane 1

Gene Ontology (GO) - Cellular Components for RPL10A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IDA 21630459
GO:0005730 nucleolus IDA --
GO:0005829 cytosol TAS --
GO:0016020 membrane IDA 19946888
genes like me logo Genes that share ontologies with RPL10A: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for RPL10A Gene

Pathways & Interactions for RPL10A Gene

genes like me logo Genes that share pathways with RPL10A: view

Pathways by source for RPL10A Gene

1 BioSystems pathway for RPL10A Gene
1 KEGG pathway for RPL10A Gene
1 GeneGo (Thomson Reuters) pathway for RPL10A Gene

Gene Ontology (GO) - Biological Process for RPL10A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay TAS --
GO:0006364 rRNA processing TAS --
GO:0006413 translational initiation TAS --
GO:0006415 translational termination TAS --
GO:0006614 SRP-dependent cotranslational protein targeting to membrane TAS --
genes like me logo Genes that share ontologies with RPL10A: view

No data available for SIGNOR curated interactions for RPL10A Gene

Drugs & Compounds for RPL10A Gene

No Compound Related Data Available

Transcripts for RPL10A Gene

Unigene Clusters for RPL10A Gene

Ribosomal protein L10a:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RPL10A Gene

ExUns: 1 ^ 2a · 2b · 2c ^ 3a · 3b · 3c · 3d · 3e ^ 4a · 4b ^ 5a · 5b · 5c ^ 6a · 6b · 6c
SP1: - - - - - - -
SP2: - - -
SP3: - - - - -
SP4: - -
SP5: - - - - - - -
SP6: -
SP7: - - - - -
SP8: - - -
SP9: -
SP10: - -

Relevant External Links for RPL10A Gene

GeneLoc Exon Structure for
RPL10A
ECgene alternative splicing isoforms for
RPL10A

Expression for RPL10A Gene

mRNA expression in normal human tissues for RPL10A Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MOPED, and MaxQB for RPL10A Gene



SOURCE GeneReport for Unigene cluster for RPL10A Gene Hs.148340

genes like me logo Genes that share expression patterns with RPL10A: view

Protein tissue co-expression partners for RPL10A Gene

- Elite partner

Primer Products

In Situ Assay Products

No data available for mRNA differential expression in normal tissues , Protein differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for RPL10A Gene

Orthologs for RPL10A Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for RPL10A Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia RPL10A 36
  • 100 (a)
OneToOne
RPL10A 35
  • 99.69 (n)
  • 100 (a)
cow
(Bos Taurus)
Mammalia -- 36
  • 98 (a)
OneToMany
-- 36
  • 97 (a)
OneToMany
RPL10A 35
  • 90.32 (n)
  • 100 (a)
dog
(Canis familiaris)
Mammalia RPL10A 35
  • 89.86 (n)
  • 100 (a)
RPL10A 36
  • 100 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Rpl10a 16
Rpl10a-ps2 36
  • 90 (a)
OneToOne
Rpl10a 35
  • 89.09 (n)
  • 100 (a)
oppossum
(Monodelphis domestica)
Mammalia RPL10A 36
  • 99 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia RPL10A 36
  • 97 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Rpl10a 35
  • 89.71 (n)
  • 100 (a)
chicken
(Gallus gallus)
Aves RPL10A 35
  • 82.8 (n)
  • 94.47 (a)
RPL10A 36
  • 94 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia RPL10A 36
  • 95 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia rpl10a-prov 35
tropical clawed frog
(Silurana tropicalis)
Amphibia rpl10a 35
  • 78.4 (n)
  • 94.44 (a)
Str.17067 35
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.8350 35
zebrafish
(Danio rerio)
Actinopterygii rpl10a 36
  • 92 (a)
OneToOne
rpl10a 35
  • 79.84 (n)
  • 92.56 (a)
wufb94f08 35
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP011298 35
  • 73.12 (n)
  • 82.03 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG3843 37
  • 57 (a)
CG7283 37
  • 77 (a)
RpL10Ab 35
  • 71.74 (n)
  • 76.96 (a)
RpL10Aa 36
  • 57 (a)
OneToMany
RpL10Ab 36
  • 77 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea rpl-1 35
  • 66.98 (n)
  • 73.02 (a)
rpl-1 37
  • 73 (a)
Y71F9AL.13b 37
  • 75 (a)
rpl-1 36
  • 73 (a)
OneToOne
A. gosspyii yeast
(Ashbya gossypii)
Saccharomycetes AGOS_AFL116W 35
  • 63.57 (n)
  • 62.33 (a)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes RPL1A 36
  • 59 (a)
OneToMany
RPL1B 36
  • 59 (a)
OneToMany
RPL1A 38
RPL1A 35
  • 59.84 (n)
  • 60 (a)
K. lactis yeast
(Kluyveromyces lactis)
Saccharomycetes KLLA0B02002g 35
  • 60.78 (n)
  • 62.79 (a)
Alicante grape
(Vitis vinifera)
eudicotyledons Vvi.7697 35
soybean
(Glycine max)
eudicotyledons Gma.6491 35
thale cress
(Arabidopsis thaliana)
eudicotyledons PGY1 35
  • 62.17 (n)
  • 64.19 (a)
barley
(Hordeum vulgare)
Liliopsida Hv.5459 35
corn
(Zea mays)
Liliopsida Zm.5240 35
rice
(Oryza sativa)
Liliopsida Os02g0321900 35
  • 62.17 (n)
  • 64.19 (a)
wheat
(Triticum aestivum)
Liliopsida Ta.28647 35
bread mold
(Neurospora crassa)
Ascomycetes NCU00294 35
  • 64.19 (n)
  • 63.72 (a)
fission yeast
(Schizosaccharomyces pombe)
Schizosaccharomycetes rpl101 35
  • 61.55 (n)
  • 64.65 (a)
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.5227 35
sea squirt
(Ciona savignyi)
Ascidiacea CSA.11350 36
  • 72 (a)
OneToOne
Species with no ortholog for RPL10A:
  • Actinobacteria (Mycobacterium tuberculosis)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • beta proteobacteria (Neisseria meningitidis)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)

Evolution for RPL10A Gene

ENSEMBL:
Gene Tree for RPL10A (if available)
TreeFam:
Gene Tree for RPL10A (if available)

Paralogs for RPL10A Gene

genes like me logo Genes that share paralogs with RPL10A: view

No data available for Paralogs for RPL10A Gene

Variants for RPL10A Gene

Sequence variations from dbSNP and Humsavar for RPL10A Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs3823432 -- 35,467,959(-) CTCGT(A/G)GTAAG upstream-variant-2KB
rs3823433 -- 35,467,816(-) TAAGG(C/T)GTCTA upstream-variant-2KB
rs45548341 -- 35,468,201(+) TTACC(-/G)GGGGA upstream-variant-2KB
rs62402089 -- 35,471,159(+) TTTAA(A/T)TGGAG downstream-variant-500B
rs111886765 -- 35,468,176(+) GCAGC(A/C)GCGGG upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for RPL10A Gene

Variant ID Type Subtype PubMed ID
nsv830641 CNV Loss 17160897
nsv528351 CNV Loss 19592680
nsv885799 CNV Loss 21882294
nsv519370 CNV Loss 19592680

Variation tolerance for RPL10A Gene

Residual Variation Intolerance Score: 28.4% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.09; 1.94% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for RPL10A Gene

HapMap Linkage Disequilibrium report
RPL10A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for RPL10A Gene

Disorders for RPL10A Gene

MalaCards: The human disease database

(6) MalaCards diseases for RPL10A Gene - From: DISEASES

Disorder Aliases PubMed IDs
myopathy, lactic acidosis, and sideroblastic anemia
bowen-conradi syndrome
  • bowen hutterite syndrome
diamond-blackfan anemia
  • diamond-blackfan anemia 1
eumycotic mycetoma
  • eumycetoma
nut allergy
  • allergy to nuts
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for RPL10A

Genetic Association Database (GAD)
RPL10A
Human Genome Epidemiology (HuGE) Navigator
RPL10A
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RPL10A
genes like me logo Genes that share disorders with RPL10A: view

No data available for UniProtKB/Swiss-Prot and Genatlas for RPL10A Gene

Publications for RPL10A Gene

  1. Identification of genes downregulated in the thymus by cyclosporin-A: preliminary characterization of clone CSA-19. (PMID: 7609734) Fisicaro N. … Pearse M. (Mol. Immunol. 1995) 2 3 4 67
  2. Physical map of human 6p21.2-6p21.3: region flanking the centromeric end of the major histocompatibility complex. (PMID: 9647638) Tripodis N. … Ragoussis J. (Genome Res. 1998) 2 3
  3. Temporal proteomics of NGF-TrkA signaling identifies an inhibitory role for the E3 ligase Cbl-b in neuroblastoma cell differentiation. (PMID: 25921289) Emdal K.B. … Olsen J.V. (Sci Signal 2015) 3
  4. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3
  5. Panorama of ancient metazoan macromolecular complexes. (PMID: 26344197) Wan C. … Emili A. (Nature 2015) 3

Products for RPL10A Gene

Sources for RPL10A Gene

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