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RPIAP1 Gene(Pseudogene)

Ribose 5-Phosphate Isomerase A Pseudogene 1

GCID:
GC18M061957
GIFtS:
11
Genes Participants
UDN Logo

Aliases for RPIAP1 Gene

Subcategory (RNA class) for RPIAP1 Gene

lncRNA

Aliases for RPIAP1 Gene

  • Ribose 5-Phosphate Isomerase A Pseudogene 1 2 3 5

External Ids for RPIAP1 Gene

ORGUL Members for RPIAP1 Gene

Previous GeneCards Identifiers for RPIAP1 Gene

  • GC18U900252
  • GC18M059624

Summaries for RPIAP1 Gene

GeneCards Summary for RPIAP1 Gene

RPIAP1 (Ribose 5-Phosphate Isomerase A Pseudogene 1) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for RPIAP1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPIAP1 Gene

Genomics for RPIAP1 Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for RPIAP1 Gene

Promoters and enhancers for RPIAP1 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH18I061959 Enhancer 0.7 ENCODE 0.8 -2.2 -2191 1.1 ZSCAN4 MAX FEZF1 RAD21 YY1 ZNF335 ZNF791 POLR2A HNF4G ZNF350 ENSG00000267560 KIAA1468 PIGN RPIAP1 GC18M061984 LOC105372158
GH18I061947 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +7.1 7066 6.1 PKNOX1 SMAD1 BMI1 BATF IRF4 ATF7 ETV6 FOS BCLAF1 IKZF2 PIGN KIAA1468 RPIAP1 LOC105372159 LOC105372158
GH18I061946 Enhancer 0.5 ENCODE dbSUPER 0.4 +11.0 10984 0.6 FOS KIAA1468 PIGN RPIAP1 LOC105372159 LOC105372158
GH18I061976 Enhancer 0.5 ENCODE 0.4 -18.1 -18109 0.2 IRF2 ATF1 CREB1 ATF7 ATF2 GC18M061984 RPIAP1 LOC105372158 PIGN
GH18I061901 Enhancer 0.6 ENCODE 0.2 +56.5 56451 0.2 CTCF ZNF654 TRIM22 IRF4 RAD21 ZNF143 SMC3 HNF4A PRDM4 ZBTB17 LOC105372159 RPIAP1 LOC105372158
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RPIAP1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPIAP1 Gene

Genomic Locations for RPIAP1 Gene
chr18:61,957,094-61,958,014
(GRCh38/hg38)
Size:
921 bases
Orientation:
Minus strand
chr18:59,624,327-59,625,247
(GRCh37/hg19)

Genomic View for RPIAP1 Gene

Genes around RPIAP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPIAP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPIAP1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for RPIAP1 Gene

Proteins for RPIAP1 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for RPIAP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPIAP1 Gene

Domains & Families for RPIAP1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPIAP1 Gene

Function for RPIAP1 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPIAP1 Gene

Localization for RPIAP1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPIAP1 Gene

Pathways & Interactions for RPIAP1 Gene

SuperPathways for RPIAP1 Gene

PathCards logo More details on SuperPathways for RPIAP1
No Data Available

Interacting Proteins for RPIAP1 Gene

Gene Ontology (GO) - Biological Process for RPIAP1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPIAP1 Gene

Drugs & Compounds for RPIAP1 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for RPIAP1 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for RPIAP1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPIAP1 Gene

No ASD Table

Relevant External Links for RPIAP1 Gene

GeneLoc Exon Structure for
RPIAP1
ECgene alternative splicing isoforms for
RPIAP1

Expression for RPIAP1 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPIAP1 Gene

mRNA expression in normal human tissues for RPIAP1 Gene
mRNA expression by GTEx for RPIAP1 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPIAP1 Gene:

RPIAP1
genes like me logo Genes that share expression patterns with RPIAP1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPIAP1 Gene

Orthologs for RPIAP1 Gene

Evolution for RPIAP1 Gene

ENSEMBL:
Gene Tree for RPIAP1 (if available)
TreeFam:
Gene Tree for RPIAP1 (if available)

No data available for Orthologs for RPIAP1 Gene

Paralogs for RPIAP1 Gene

No data available for Paralogs for RPIAP1 Gene

Variants for RPIAP1 Gene

Additional Variant Information for RPIAP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPIAP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPIAP1 Gene

Disorders for RPIAP1 Gene

No disorders were found for RPIAP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPIAP1 Gene

Publications for RPIAP1 Gene

  1. DNA sequence and analysis of human chromosome 18. (PMID: 16177791) Nusbaum C … Lander ES (Nature 2005) 3 58
  2. Finishing the euchromatic sequence of the human genome. (PMID: 15496913) International Human Genome Sequencing Consortium (Nature 2004) 3 58
  3. Initial sequencing and analysis of the human genome. (PMID: 11237011) Lander ES … International Human Genome Sequencing Consortium (Nature 2001) 3 58

Products for RPIAP1 Gene

Sources for RPIAP1 Gene

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