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Aliases for RP9P Gene

Aliases for RP9P Gene

  • Retinitis Pigmentosa 9 Pseudogene 2 3 5
  • PNAS-13 3

External Ids for RP9P Gene

Summaries for RP9P Gene

GeneCards Summary for RP9P Gene

RP9P (Retinitis Pigmentosa 9 Pseudogene) is a Pseudogene. Diseases associated with RP9P include Retinitis Pigmentosa 9 and Retinitis Pigmentosa.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RP9P Gene

Genomics for RP9P Gene

Regulatory Elements for RP9P Gene

Enhancers for RP9P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07F032880 1 Ensembl 14.2 +61.2 61176 2.8 PKNOX1 CEBPG THRB ZNF121 ZNF366 SCRT2 PRDM10 ZNF600 GFI1B CEBPB RP9P KBTBD2 PIR49739
GH07F032887 0.9 Ensembl ENCODE 14 +52.0 51981 6.8 HDGF PKNOX1 WRNIP1 ZFP64 ARID4B SIN3A DMAP1 YY1 SLC30A9 ZNF143 RP9P KBTBD2 DPY19L1P1 PIR49739
GH07F032941 0.4 ENCODE 12.9 +0.6 638 2.7 CREB3L1 SIN3A DMAP1 ZNF48 GLIS2 ELK1 ZNF143 KLF7 MIER2 REST KBTBD2 RP9P FKBP9
GH07F032956 1 ENCODE 12.2 -14.6 -14642 2.7 CREB3L1 ARID4B SIN3A DMAP1 KLF13 ZNF263 SP3 SP5 REST SMARCB1 RP9P KBTBD2 NT5C3A RP9 FKBP9 RNU6-388P
GH07F032967 0.2 Ensembl 11.7 -24.1 -24126 0.6 CEBPB ZIC2 RP9P FKBP9 RNU6-388P
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RP9P on UCSC Golden Path with GeneCards custom track

Promoters for RP9P Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000157448 876 2601 CREB3L1 SIN3A DMAP1 ZNF48 ELK1 ZNF143 KLF7 MIER2 REST SMARCB1

Genomic Location for RP9P Gene

Chromosome:
7
Start:
32,916,815 bp from pter
End:
32,943,176 bp from pter
Size:
26,362 bases
Orientation:
Minus strand

Genomic View for RP9P Gene

Genes around RP9P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RP9P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RP9P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RP9P Gene

Proteins for RP9P Gene

Post-translational modifications for RP9P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RP9P Gene

Domains & Families for RP9P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RP9P Gene

Function for RP9P Gene

Animal Model Products

miRNA for RP9P Gene

miRTarBase miRNAs that target RP9P

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for RP9P Gene

Localization for RP9P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RP9P Gene

Pathways & Interactions for RP9P Gene

SuperPathways for RP9P Gene

No Data Available

Interacting Proteins for RP9P Gene

Gene Ontology (GO) - Biological Process for RP9P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RP9P Gene

Transcripts for RP9P Gene

mRNA/cDNA for RP9P Gene

(1) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(210) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RP9P Gene

Retinitis pigmentosa 9 pseudogene:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RP9P Gene

No ASD Table

Relevant External Links for RP9P Gene

GeneLoc Exon Structure for
RP9P
ECgene alternative splicing isoforms for
RP9P

Expression for RP9P Gene

mRNA expression in normal human tissues for RP9P Gene

NURSA nuclear receptor signaling pathways regulating expression of RP9P Gene:

RP9P

SOURCE GeneReport for Unigene cluster for RP9P Gene:

Hs.648086
genes like me logo Genes that share expression patterns with RP9P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RP9P Gene

Orthologs for RP9P Gene

Evolution for RP9P Gene

ENSEMBL:
Gene Tree for RP9P (if available)
TreeFam:
Gene Tree for RP9P (if available)

No data available for Orthologs for RP9P Gene

Paralogs for RP9P Gene

No data available for Paralogs for RP9P Gene

Variants for RP9P Gene

Sequence variations from dbSNP and Humsavar for RP9P Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs10244423 -- 32,923,516(+) gaggt(C/T)taggc intron-variant
rs10278077 -- 32,924,543(+) gagcc(A/G)agatc intron-variant
rs1037324 -- 32,941,549(+) AATGA(A/C)GAATC intron-variant
rs10556216 -- 32,944,102(+) AGTTC(-/TTT)TTTTT upstream-variant-2KB
rs111228118 -- 32,933,353(+) TGACT(A/G)CATAG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for RP9P Gene

Variant ID Type Subtype PubMed ID
dgv1080e201 CNV deletion 23290073
esv2734229 CNV deletion 23290073
esv3612750 OTHER inversion 21293372
nsv1029220 CNV gain 25217958
nsv1033096 CNV loss 25217958
nsv1135982 CNV deletion 24896259
nsv436907 CNV insertion 17901297

Relevant External Links for RP9P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RP9P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RP9P Gene

Disorders for RP9P Gene

MalaCards: The human disease database

(2) MalaCards diseases for RP9P Gene - From: GeneCards

Disorder Aliases PubMed IDs
retinitis pigmentosa 9
  • rp9
retinitis pigmentosa
  • retinitis pigmentosa 1
- elite association - COSMIC cancer census association via MalaCards
Search RP9P in MalaCards View complete list of genes associated with diseases

Relevant External Links for RP9P

Genetic Association Database (GAD)
RP9P
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RP9P
genes like me logo Genes that share disorders with RP9P: view

No data available for UniProtKB/Swiss-Prot and Genatlas for RP9P Gene

Publications for RP9P Gene

  1. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3 64
  2. Chromosome 6p22 locus associated with clinically aggressive neuroblastoma. (PMID: 18463370) Maris J.M. … Hakonarson H. (N. Engl. J. Med. 2008) 46 64
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for RP9P Gene

Sources for RP9P Gene

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