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Aliases for RP9P Gene

Aliases for RP9P Gene

  • RP9 Pseudogene 2 3 5
  • Retinitis Pigmentosa 9 Pseudogene 2 3
  • PNAS-13 3

External Ids for RP9P Gene

Summaries for RP9P Gene

GeneCards Summary for RP9P Gene

RP9P (RP9 Pseudogene) is a Pseudogene. Diseases associated with RP9P include Retinitis Pigmentosa 9 and Retinitis Pigmentosa.

Additional gene information for RP9P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RP9P Gene

Genomics for RP9P Gene

GeneHancer (GH) Regulatory Elements for RP9P Gene

Promoters and enhancers for RP9P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07I032941 Promoter/Enhancer 1.5 Ensembl ENCODE 562.9 +0.6 638 2.7 SIN3A DMAP1 ZNF48 YY1 ZNF280A TCF12 ZNF766 GLIS2 ELK1 ZNF143 RP9P KBTBD2 FKBP9
GH07I032887 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 14 +52.0 51995 6.8 HDGF PKNOX1 CLOCK SMAD1 FOXA2 ZFP64 ARID4B SIN3A DMAP1 YY1 KBTBD2 RP9P DPY19L1P1 PIR49739
GH07I032956 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 12.2 -14.6 -14641 2.7 ARNT ARID4B SIN3A DMAP1 ZBTB7B ZNF263 SP3 SP5 SMARCB1 KAT8 FKBP9 RP9P KBTBD2 NT5C3A RP9 RNU6-388P
GH07I033038 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 7.4 -98.6 -98603 7.4 ATF1 FOXA2 ARNT ARID4B SIN3A YY1 TCF12 ATF7 RUNX3 RXRA NT5C3A FKBP9 RP9P RP9 GC07M033036 RN7SL505P
GH07I032585 Enhancer 1.3 Ensembl ENCODE dbSUPER 10.7 +355.5 355488 4.9 ELF3 PKNOX1 FOXA2 ARID4B SIN3A FEZF1 BATF IRF4 DNMT3B ETS1 PIR55327 DPY19L1P1 LOC100130673 RP9P SLC25A5P5 AVL9 GC07M032689 PIR46719
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RP9P on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the RP9P gene promoter:

Genomic Locations for RP9P Gene

Genomic Locations for RP9P Gene
chr7:32,916,815-32,943,176
(GRCh38/hg38)
Size:
26,362 bases
Orientation:
Minus strand
chr7:32,956,427-32,982,788
(GRCh37/hg19)

Genomic View for RP9P Gene

Genes around RP9P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RP9P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RP9P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RP9P Gene

Function for RP9P Gene

Phenotypes From GWAS Catalog for RP9P Gene

Animal Model Products

miRNA for RP9P Gene

miRTarBase miRNAs that target RP9P

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for RP9P Gene

Localization for RP9P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RP9P Gene

Pathways & Interactions for RP9P Gene

No Data Available

Interacting Proteins for RP9P Gene

Gene Ontology (GO) - Biological Process for RP9P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RP9P Gene

Drugs & Compounds for RP9P Gene

No Compound Related Data Available

Transcripts for RP9P Gene

mRNA/cDNA for RP9P Gene

(1) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(210) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RP9P Gene

Retinitis pigmentosa 9 pseudogene:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RP9P Gene

No ASD Table

Relevant External Links for RP9P Gene

GeneLoc Exon Structure for
RP9P
ECgene alternative splicing isoforms for
RP9P

Expression for RP9P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RP9P Gene

NURSA nuclear receptor signaling pathways regulating expression of RP9P Gene:

RP9P

SOURCE GeneReport for Unigene cluster for RP9P Gene:

Hs.648086
genes like me logo Genes that share expression patterns with RP9P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RP9P Gene

Orthologs for RP9P Gene

Evolution for RP9P Gene

ENSEMBL:
Gene Tree for RP9P (if available)
TreeFam:
Gene Tree for RP9P (if available)

No data available for Orthologs for RP9P Gene

Paralogs for RP9P Gene

No data available for Paralogs for RP9P Gene

Variants for RP9P Gene

Sequence variations from dbSNP and Humsavar for RP9P Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs1000024349 -- 32,922,959(-) T/G intron_variant
rs1000136646 -- 32,938,908(-) C/T intron_variant
rs1000167022 -- 32,922,015(-) G/A intron_variant
rs1000435296 -- 32,938,879(-) A/T intron_variant
rs1000463112 -- 32,921,016(-) G/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for RP9P Gene

Variant ID Type Subtype PubMed ID
dgv1080e201 CNV deletion 23290073
esv2734229 CNV deletion 23290073
esv3612750 OTHER inversion 21293372
nsv1029220 CNV gain 25217958
nsv1033096 CNV loss 25217958
nsv1135982 CNV deletion 24896259
nsv436907 CNV insertion 17901297

Additional Variant Information for RP9P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RP9P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RP9P Gene

Disorders for RP9P Gene

MalaCards: The human disease database

(2) MalaCards diseases for RP9P Gene - From: GeneCards

Disorder Aliases PubMed IDs
retinitis pigmentosa 9
  • rp9
retinitis pigmentosa
  • rp
- elite association - COSMIC cancer census association via MalaCards
Search RP9P in MalaCards View complete list of genes associated with diseases

Additional Disease Information for RP9P

genes like me logo Genes that share disorders with RP9P: view

No data available for UniProtKB/Swiss-Prot and Genatlas for RP9P Gene

Publications for RP9P Gene

  1. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T … Vidal M (Cell 2014) 3 58
  2. Chromosome 6p22 locus associated with clinically aggressive neuroblastoma. (PMID: 18463370) Maris JM … Hakonarson H (The New England journal of medicine 2008) 44 58
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for RP9P Gene

Sources for RP9P Gene

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