Free for academic non-profit institutions. Other users need a Commercial license

Aliases for RP9P Gene

Aliases for RP9P Gene

  • RP9 Pseudogene 2 3
  • Retinitis Pigmentosa 9 Pseudogene 2 3 5
  • PNAS-13 3

External Ids for RP9P Gene

Summaries for RP9P Gene

GeneCards Summary for RP9P Gene

RP9P (RP9 Pseudogene) is a Pseudogene. Diseases associated with RP9P include Retinitis Pigmentosa 9 and Retinitis Pigmentosa.

Additional gene information for RP9P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RP9P Gene

Genomics for RP9P Gene

Regulatory Elements for RP9P Gene

Enhancers for RP9P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07H032887 1.4 ENCODE dbSUPER 14 +52.0 51996 6.8 HDGF PKNOX1 ZFP64 ARID4B SIN3A DMAP1 YY1 SLC30A9 ZNF766 ZNF143 RP9P KBTBD2 DPY19L1P1 PIR49739
GH07H032585 1.4 Ensembl ENCODE dbSUPER 10.7 +355.5 355488 4.9 ELF3 PKNOX1 FOXA2 ARID4B SIN3A FEZF1 BATF DNMT3B ZNF766 FOS DPY19L1P1 LOC100130673 RP9P SLC25A5P5 PIR55327 PIR46719 GC07M032689
GH07H032956 1.1 ENCODE 12.2 -14.6 -14642 2.7 ATF1 ARNT ARID4B SIN3A DMAP1 ZBTB7B ZNF121 GLIS2 ELK1 ATF7 RP9P KBTBD2 NT5C3A RP9 FKBP9 RNU6-388P
GH07H032941 1 ENCODE 12.9 +0.6 638 2.7 SIN3A DMAP1 YY1 TCF12 ZNF766 GLIS2 ELK1 ZNF143 KLF7 ATF7 KBTBD2 RP9P RP9 FKBP9
GH07H032505 1.2 Ensembl ENCODE 8.5 +436.2 436173 2.6 PKNOX1 ATF1 ARNT YY1 TCF12 ZNF766 GATA2 FOS ATF7 RUNX3 LOC100130673 DPY19L1P1 RP9 RP9P SLC25A5P5 AVL9 PIR53283
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RP9P on UCSC Golden Path with GeneCards custom track

Promoters for RP9P Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000210556 676 2201 SIN3A DMAP1 YY1 TCF12 ZNF766 CBX5 ELK1 ZNF143 KLF7 ATF7

Genomic Locations for RP9P Gene

Genomic Locations for RP9P Gene
chr7:32,916,815-32,943,176
(GRCh38/hg38)
Size:
26,362 bases
Orientation:
Minus strand
chr7:32,956,427-32,982,788
(GRCh37/hg19)

Genomic View for RP9P Gene

Genes around RP9P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RP9P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RP9P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RP9P Gene

Function for RP9P Gene

Phenotypes From GWAS Catalog for RP9P Gene

Animal Model Products

miRNA for RP9P Gene

miRTarBase miRNAs that target RP9P

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for RP9P Gene

Localization for RP9P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RP9P Gene

Pathways & Interactions for RP9P Gene

No Data Available

Interacting Proteins for RP9P Gene

Gene Ontology (GO) - Biological Process for RP9P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RP9P Gene

Drugs & Compounds for RP9P Gene

No Compound Related Data Available

Transcripts for RP9P Gene

mRNA/cDNA for RP9P Gene

(1) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(210) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RP9P Gene

Retinitis pigmentosa 9 pseudogene:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RP9P Gene

No ASD Table

Relevant External Links for RP9P Gene

GeneLoc Exon Structure for
RP9P
ECgene alternative splicing isoforms for
RP9P

Expression for RP9P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RP9P Gene

NURSA nuclear receptor signaling pathways regulating expression of RP9P Gene:

RP9P

SOURCE GeneReport for Unigene cluster for RP9P Gene:

Hs.648086
genes like me logo Genes that share expression patterns with RP9P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RP9P Gene

Orthologs for RP9P Gene

Evolution for RP9P Gene

ENSEMBL:
Gene Tree for RP9P (if available)
TreeFam:
Gene Tree for RP9P (if available)

No data available for Orthologs for RP9P Gene

Paralogs for RP9P Gene

No data available for Paralogs for RP9P Gene

Variants for RP9P Gene

Sequence variations from dbSNP and Humsavar for RP9P Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs1000024349 -- 32,922,959(+) GCAAA(G/T)TCAAC intron-variant
rs1000136646 -- 32,938,908(+) TGCTT(C/T)CTACC intron-variant
rs1000167022 -- 32,922,015(+) TACAT(A/G)CTCCA intron-variant
rs1000435296 -- 32,938,879(+) CTTTT(A/T)AAAAA intron-variant
rs1000463112 -- 32,921,016(+) ACTCT(C/G)ATTTT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for RP9P Gene

Variant ID Type Subtype PubMed ID
nsv436907 CNV insertion 17901297
nsv1135982 CNV deletion 24896259
nsv1033096 CNV loss 25217958
nsv1029220 CNV gain 25217958
esv3612750 OTHER inversion 21293372
esv2734229 CNV deletion 23290073
dgv1080e201 CNV deletion 23290073

Relevant External Links for RP9P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RP9P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RP9P Gene

Disorders for RP9P Gene

MalaCards: The human disease database

(2) MalaCards diseases for RP9P Gene - From: GeneCards

Disorder Aliases PubMed IDs
retinitis pigmentosa 9
  • rp9
retinitis pigmentosa
  • retinitis pigmentosa 1
- elite association - COSMIC cancer census association via MalaCards
Search RP9P in MalaCards View complete list of genes associated with diseases

Relevant External Links for RP9P

Genetic Association Database (GAD)
RP9P
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RP9P
genes like me logo Genes that share disorders with RP9P: view

No data available for UniProtKB/Swiss-Prot and Genatlas for RP9P Gene

Publications for RP9P Gene

  1. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T … Vidal M (Cell 2014) 3 60
  2. Chromosome 6p22 locus associated with clinically aggressive neuroblastoma. (PMID: 18463370) Maris JM … Hakonarson H (The New England journal of medicine 2008) 45 60
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60

Products for RP9P Gene

Sources for RP9P Gene

Content
Loading form....