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Aliases for RP9P Gene

Aliases for RP9P Gene

  • Retinitis Pigmentosa 9 Pseudogene 2 3
  • PNAS-13 3

External Ids for RP9P Gene

Summaries for RP9P Gene

GeneCards Summary for RP9P Gene

RP9P (Retinitis Pigmentosa 9 Pseudogene) is a Pseudogene. Diseases associated with RP9P include retinitis pigmentosa 9 and retinitis pigmentosa.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RP9P Gene

Genomics for RP9P Gene

Genomic Location for RP9P Gene

Start:
32,916,815 bp from pter
End:
32,943,176 bp from pter
Size:
26,362 bases
Orientation:
Minus strand

Genomic View for RP9P Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RP9P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RP9P Gene

Regulatory Elements for RP9P Gene

Proteins for RP9P Gene

Post-translational modifications for RP9P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RP9P Gene

Domains for RP9P Gene

No data available for Gene Families , Protein Domains and UniProtKB/Swiss-Prot for RP9P Gene

Function for RP9P Gene

miRNA for RP9P Gene

miRTarBase miRNAs that target RP9P

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for RP9P Gene

Localization for RP9P Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for RP9P Gene COMPARTMENTS Subcellular localization image for RP9P gene
Compartment Confidence
nucleus 2
cytosol 1
extracellular 1
mitochondrion 1
plasma membrane 1

No data available for Gene Ontology (GO) - Cellular Components for RP9P Gene

Pathways for RP9P Gene

SuperPathways for RP9P Gene

No Data Available

Interacting Proteins for RP9P Gene

Gene Ontology (GO) - Biological Process for RP9P Gene

None

No data available for Pathways by source for RP9P Gene

Transcripts for RP9P Gene

mRNA/cDNA for RP9P Gene

Unigene Clusters for RP9P Gene

Retinitis pigmentosa 9 pseudogene:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RP9P Gene

No ASD Table

Relevant External Links for RP9P Gene

GeneLoc Exon Structure for
RP9P
ECgene alternative splicing isoforms for
RP9P

Expression for RP9P Gene

mRNA expression in normal human tissues for RP9P Gene

SOURCE GeneReport for Unigene cluster for RP9P Gene Hs.648086

genes like me logo Genes that share expressions with RP9P: view

Orthologs for RP9P Gene

Evolution for RP9P Gene

ENSEMBL:
Gene Tree for RP9P (if available)
TreeFam:
Gene Tree for RP9P (if available)

No data available for Orthologs for RP9P Gene

Paralogs for RP9P Gene

No data available for Paralogs for RP9P Gene

Variants for RP9P Gene

Sequence variations from dbSNP and Humsavar for RP9P Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type MAF
rs1138864 -- 32,916,938(-) tccca(A/G)agcat nc-transcript-variant
rs2060730 -- 32,928,730(+) CAAGA(C/G/T)AGCGC intron-variant
rs2060731 -- 32,928,734(+) ATAGC(A/G)CTGGG intron-variant
rs2278817 -- 32,917,329(+) TTGAA(C/T)AAGTC nc-transcript-variant
rs2278818 -- 32,921,568(+) TGAAC(C/T)GTGTA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for RP9P Gene

Variant ID Type Subtype PubMed ID
dgv1127e201 CNV Deletion 23290073
nsv436907 CNV Insertion 17901297
esv2734229 CNV Deletion 23290073

Relevant External Links for RP9P Gene

HapMap Linkage Disequilibrium report
RP9P

Disorders for RP9P Gene

Relevant External Links for RP9P

Genetic Association Database (GAD)
RP9P
genes like me logo Genes that share disorders with RP9P: view

No data available for UniProtKB/Swiss-Prot for RP9P Gene

Publications for RP9P Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  2. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3
  3. Chromosome 6p22 locus associated with clinically aggressive neuroblastoma. (PMID: 18463370) Maris J.M. … Hakonarson H. (N. Engl. J. Med. 2008) 49

Products for RP9P Gene

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat
  • QIAGEN qRT-PCR Assays for microRNAs that regulate RP9P
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for RP9P
    • Block miRNA regulation of RP9P using miScript Target Protectors

    Sources for RP9P Gene

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