ROS1 Gene
protein-coding GIFtS: 65
GC06M117716
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c-ros oncogene 1 , receptor tyrosine kinase (Previous names: v-ros avian UR2 sarcoma virus oncogene homolog 1, v-ros UR2 sarcoma virus oncogene homolog 1 (avian) ) Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
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Aliases & Descriptions for ROS1
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
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| Aliases |
|---|
| EC 2.7.10.1 3 | | MCF3 1, 2, 5 | | OTTHUMP00000017814 2 | | OTTHUMP00000040389 2 | | ROS 1, 2 | | c-ros-1 1, 2, 3 |
| | | Descriptions |
|---|
| c-ros oncogene 1 , receptor tyrosine kinase 2 | | proto-oncogene c-ros-1 protein 2 | | proto-oncogene tyrosine-protein kinase ROS 2 | | transmembrane tyrosine-specific protein kinase 2 | | v-ros UR2 sarcoma virus oncogene homolog 1 2 | | v-ros UR2 sarcoma virus oncogene homolog 1 (avian) 1 | | v-ros avian UR2 sarcoma virus oncogene homolog 1 1, 2 |
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| | Search outside databases for aliases for ROS1 genePrevious GC identifers: GC06M117444 GC06M117632 GC06M117655 |
Summaries for ROS1(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for ROS1: This proto-oncogene, highly-expressed in a variety of tumor cell lines, belongs to the sevenless subfamily of tyrosine kinase insulin receptor genes. The protein encoded by this gene is a type I integral membrane protein with tyrosine kinase activity. The protein may function as a growth or differentiation factor receptor. [provided by RefSeq] UniProtKB/Swiss-Prot: ROS_HUMAN, P08922Function: This is probably a cell growth or differentiation factor receptor with a tyrosine-protein kinase activityGene Wiki entry for ROS1 |
Genomic Location for ROS1
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the ROS1 gene 
Entrez Gene cytogenetic band: 6q22 Ensembl cytogenetic band: 6q22.2 HGNC cytogenetic band: 6q21-q22ROS1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 6 GeneLoc Exon Structure GeneLoc location for GC06M117716:
(about GC identifiers)
Start:
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117,716,223 bp from pter |
End:
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117,853,711 bp from pter |
Size:
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137,489 bases |
Orientation:
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minus strand |
RefSeq DNA sequence:- NC_000006.10 NT_025741.14
| Proteins for ROS1
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: ROS_HUMAN, P08922 (See
protein sequence)Recommended Name: Proto-oncogene tyrosine-protein kinase ROS precursor Size: 2347 amino acids; 263915 Da
Subcellular location: Membrane; Single-pass type I membrane protein
Secondary accessions: Q15368 Q5TDB5Post-translational modifications:
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_002935.2
ENSEMBL proteins: ENSP00000357494 ENSP00000357493 ENSP00000384647
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
4 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for ROS1: Assays for ROS1: | Protein
Domains/ Families for ROS1(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P08922
ProtoNet protein and cluster: P08922 2 Blocks protein families: IPB002011 Receptor tyrosine kinase IPB008266 Tyrosine protein kinase
UniProtKB/Swiss-Prot: ROS_HUMAN, P08922Similarity: Belongs to the protein kinase superfamily. Tyr protein kinase family. Insulin receptor subfamilySimilarity: Contains 9 fibronectin type-III domainsSimilarity: Contains 1 protein kinase domain | Gene Function for ROS1
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_002944
Applied Biosystems Silencer® siRNAs for ROS1
Sigma-Aldrich siRNA and siRNA Panels for ROS1  Sigma-Aldrich shRNA Panels and shRNA for ROS1  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_002944                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_002944                                  untagged cDNA clone in CMV expression vector: NM_002944 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_002944
UniProtKB/Swiss-Prot: ROS_HUMAN, P08922Function: This is probably a cell growth or differentiation factor receptor with a tyrosine-protein kinase activityCatalytic activity: ATP + a [protein]-L-tyrosine = ADP + a [protein]-L-tyrosine phosphateEnzyme Number (IUBMB): EC 2.7.10.1 Genatlas biochemistry entry for ROS1:avian UR2 sarcoma virus oncogene (v-ros) homolog1 MGI mutant phenotype (inferred from 2 alleles ) (MGI details for Ros1):
5 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for ROS1
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
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Gene Network CentralTM Interacting Genes and Proteins Network for ROS1 
5/16 Interacting proteins for ROS1 (ENSP000003574943) via UniProtKB, MINT, and/or STRING (see all 16
)About this table
3 Gene Ontology (GO) biological process terms (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
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| GO:0006468 | protein amino acid phosphorylation |
IEA | -- | | GO:0007165 | signal transduction |
TAS | 2827175 | | GO:0007169 | transmembrane receptor protein tyrosine kinase signaling pathway |
IEA | -- | About this table
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Drugs & Compounds for ROS1(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
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Browse Tocris compounds for ROS1 1 Novoseek chemical compound relationship for ROS1 gene
About this table
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Transcripts for ROS1(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_002944
Sigma-Aldrich siRNA and siRNA Panels for ROS1  Sigma-Aldrich shRNA Panels and shRNA for ROS1  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_002944 REFSEQ mRNAs for ROS1 gene: NM_002944.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_002944               OriGene GFP tagged cDNA clone in CMV expression vector: NM_002944                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_002944                                  untagged cDNA clone in CMV expression vector: NM_002944  Additional cDNA sequence: BC144556.1 EU236947.1 M13880.1 M34353.1 2 DOTS entries: DT.407368 DT.304113 24/245 AceView cDNA sequences (see all 245
):AA731604 AA857714 BE079339 AI280205 AI674676 AA280266 AI655862 NM_020399 AA279957 AA906073 CA442919 R44525 AI970512 AA280525 AA285063 AI123743 BU619859 N79051 BM998561 AA992214 AW304241 AI089113 AI262390 AI337304
highest scoring ESTs for ROS1:M34353 BP204713 M13880 NM_002944 W24195 W24201 AA026477 AA485969 AA487805 AI873380 Unigene Cluster for ROS1: C-ros oncogene 1 , receptor tyrosine kinase Hs.1041 [show with all ESTs]Unigene Representative Sequence: M34353
GeneLoc Exon Structure
3 Ensembl transcripts including schematic representations: ENST00000368508
ENST00000368507
ENST00000403284
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Expression for ROS1
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| ROS1 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for ROS1
1 / 2 / 3 5 probe-sets matching ROS1 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: CAGACAAAGA
SOURCE GeneReport for Unigene cluster: Hs.1041
Expression variation in blood from EXPOLDB for ROS1 |
Orthologs for ROS1
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
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Orthologs for ROS1 gene from 5/8 species (see all 8
)
About this table Species with no ortholog for ROS1
ENSEMBL Gene Tree for ROS1 | Paralogs for ROS1(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for ROS1 gene
- DDR22 DDR12
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SNPs/Variants for ROS1(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
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HapMap Linkage Disequilibrium images for ROS1 (up to first 250kb)
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Disorders & Mutations for ROS1
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
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OMIM: 165020
UniProtKB/Swiss-Prot: ROS_HUMAN, P08922
A chromosomal aberration involving ROS1 is found in glioblastoma multiform (GBM). An homozygous deletion in chromosome 6q21 results in expression of a GOPC-ROS1 chimeric protein which has a constitutive receptor tyrosine kinase activity3 Novoseek disease relationships for ROS1 gene
About this table
Human Gene Mutation Database: ROS1 Genetic Association Database: ROS1 Human Genome Epidemiology Navigator: ROS1 (10 documents) Tumor Gene Database: ROS1
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Medical News for ROS1(Possibly Related Articles in
Doctor's Guide)
About This Section
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Publications for ROS1 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/34 PubMed articles for ROS1 gene (see all 34
):- Characterization of ROS1 cDNA from a human glioblastoma cell line. (PubMed id 2352949)1, 3, 4 Birchmeier C.... Wigler M. (1990)
- Fusion of FIG to the receptor tyrosine kinase ROS in a glioblastoma with an interstitial del(6)(q21q21). (PubMed id 12661006)1, 3, 4 Charest A....Housman D. (2003)
- Identification of four gene variants associated with myocardial infarction. (PubMed id 16175505)3, 6 Shiffman D....Kane J.P. (2005)
- The DNA sequence and analysis of human chromosome 6. (PubMed id 14574404)3, 4 Mungall A.J.... Beck S. (2003)
- Localization of the 5' end of the MCF2 oncogene to human chromosome 15q15----q23. (PubMed id 1611909)2, 3 Galland F....Birnbaum D. (1992)
- Characterization of an activated human ros gene. (PubMed id 3785223)3, 4 Birchmeier C.... Wigler M. (1986)
- Human c-ros-1 gene homologous to the v-ros sequence of UR2 sarcoma virus encodes for a transmembrane receptorlike molecule. (PubMed id 3023956)3, 4 Matsushime H.... Shibuya M. (1986)
- Visualization of SHP-1-target interaction. (PubMed id 15456853)1, 3 Biskup C....Bohmer F.D. (2004)
- Association of a polymorphism of the apolipoprotein E gene with chronic kidney disease in Japanese individuals with metabolic syndrome. (PubMed id 19056482)3 Yoshida T....Yamada Y. (2009)
- Gene variants associated with ischemic stroke: the cardiovascular health study. (PubMed id 19023099)3 Luke M.M....Psaty B.M. (2009)
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Search for ROS1
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
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Genome Databases showing ROS1
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing ROS1
(According to HUGE)
About This Section
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Specialized Databases showing ROS1(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
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| Services for ROS1(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
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 Products for ROS1:

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| Antibodies & Assays for ROS1  (Ros) |
| | Recombinant Proteins (ROS) | | Antibodies (ROS) |
| | | Search Tocris compounds for ROS1 |
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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009
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