Set Analyses:
Advanced Search

Advanced Search

 
Search By
Section (entire)
for


 
or upload a file of gene symbols


Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

RORC Gene

protein-coding   GIFtS: 63
GCID: GC01M151778

RAR-related orphan receptor C

 Explore 15 diseases affiliated with
RORC via our new
 Human Malady Compendium 
Biological research products
for RORC
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
RAR-Related Orphan Receptor C1 2     RZR-GAMMA2
RORG1 2 3 5     Nuclear Receptor ROR-Gamma2
RZRG1 2 3 5     RAR-Related Orphan Nuclear Receptor Variant 22
NR1F31 2 3     Retinoic Acid-Binding Receptor Gamma2
TOR1 2     Retinoid-Related Orphan Receptor Gamma2
Nuclear Receptor RZR-Gamma2 3     Retinoid-Related Orphan Receptor-Gamma3
Nuclear Receptor Subfamily 1 Group F Member 32 3     

External Ids:    HGNC: 102601   Entrez Gene: 60972   Ensembl: ENSG000001433657   OMIM: 6029435   UniProtKB: P514493   

Export aliases for RORC gene to outside databases

Previous GC identifers: GC01M149620 GC01M147561 GC01M148553 GC01M148995 GC01M148997 GC01M148592 GC01M150040 GC01M150046 GC01M123155


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for RORC:
The protein encoded by this gene is a DNA-binding transcription factor and is a member of the NR1 subfamily of nuclear
hormone receptors. The specific functions of this protein are not known; however, studies of a similar gene in mice
have shown that this gene may be essential for lymphoid organogenesis and may play an important regulatory role in
thymopoiesis. In addition, studies in mice suggest that the protein encoded by this gene may inhibit the expression of
Fas ligand and IL2. Two transcript variants encoding different isoforms have been found for this gene. (provided by
RefSeq, Jul 2008)

UniProtKB/Swiss-Prot: RORG_HUMAN, P51449
Function: Possible nuclear receptor for hydroxycholesterols, the binding of which strongly promotes coactivators
recruitment. Essential for thymopoiesis and the development of several secondary lymphoid tissues, including lymph
nodes. Involved in lineage specification of uncommitted CD4(+) T-helper cells into Th17 cells. Regulate the expression
of several components of the circadian clock

Gene Wiki entry for RORC (RAR-related orphan receptor gamma)


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000001.10  NC_018912.1  NT_004487.19  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the RORC gene promoter:
         AP-1   ATF-2   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmids (see all 2): RORC promoter sequence
   Search SABiosciences Chromatin IP Primers for RORC

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat RORC


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 1q21   Ensembl cytogenetic band:  1q21.3   HGNC cytogenetic band: 1q21

RORC Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
RORC gene location

GeneLoc information about chromosome 1         GeneLoc Exon Structure

GeneLoc location for GC01M151778:  view genomic region     (about GC identifiers)

Start:
151,778,547 bp from pter      End:
151,804,348 bp from pter
Size:
25,802 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: RORG_HUMAN, P51449 (See protein sequence)
Recommended Name: Nuclear receptor ROR-gamma  
Size: 518 amino acids; 58195 Da
Subcellular location: Nucleus (Probable)
Sequence caution: Sequence=AAA64751.1; Type=Frameshift; Positions=516;
4 PDB 3D structures from and Proteopedia for RORC:
3B0W (3D)        3KYT (3D)        3L0J (3D)        3L0L (3D)    
Secondary accessions: Q5SZR9 Q8N5V7 Q8NCY8
Alternative splicing: 2 isoforms:  P51449-1   P51449-2   

Explore the universe of human proteins at neXtProt for RORC: NX_P51449

Post-translational modifications:

  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_P51449

  • RORC Protein expression data from MOPED and PaxDb:    About this image 
    Estimated protein expression log10 (pmol).

    REFSEQ proteins (2 alternative transcripts): 
    NP_001001523.1  NP_005051.2  

    ENSEMBL proteins: 
     ENSP00000349164   ENSP00000327025   ENSP00000376461  
    Reactome Protein details: P51449
    Human Recombinant Protein Products: 
    Browse Purified and Recombinant Proteins at EMD Millipore
    Browse R&D Systems for human recombinant proteins
    Browse recombinant and purified proteins available from Enzo Life Sciences
    OriGene Purified Protein: RORC
    OriGene Protein Over-expression Lysate (see all 2): RORC
    OriGene Custom Protein Services for RORC 
    GenScript Custom Purified and Recombinant Proteins Services for RORC
    Novus Biologicals RORC Proteins
    Novus Biologicals RORC Lysates
    Browse Sino Biological Recombinant Proteins
    ProSpec Recombinant Protein for RORC
    Browse Proteins at Uscn

    Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005634nucleus ----
    GO:0005654nucleoplasm TAS--


    RORC for ontologies           About GeneDecksing



    RORC Antibody Products: 
    EMD Millipore Mono- and Polyclonal Antibodies for the study of RORC
    R&D Systems Antibodies for RORC (ROR gamma/RORC/NR1F3, ROR gamma t/RORC2/NR1F3)
    Browse OriGene Antibodies
    OriGene Custom Antibody Services for RORC 
    GenScript Custom Superior Antibodies Services for RORC
    Novus Biologicals RORC Antibodies
    Abcam antibodies for RORC 
    Browse Antibodies at Uscn
    ThermoFisher Antibodies for RORC

    Assay Products for RORC: 
    Browse Kits and Assays available from EMD Millipore
    OriGene Custom Immunoassay Development
    Browse OriGene Fluorogenic Cell Assay Kits
    Browse R&D Systems for biochemical assays
    GenScript Custom Assay Services for RORC
    Browse Enzo Life Sciences for kits & assays
    Browse ELISAs and CLIAs at Uscn


    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    RORC for domains           About GeneDecksing

    5/6 InterPro domains/families (see all 6):
     IPR013088 Znf_NHR/GATA
     IPR008946 Nucl_hormone_rcpt_ligand-bd
     IPR000536 Nucl_hrmn_rcpt_lig-bd_core
     IPR001628 Znf_hrmn_rcpt
     IPR001723 Str_hrmn_rcpt

    Graphical View of Domain Structure for InterPro Entry P51449

    ProtoNet protein and cluster: P51449

    2 Blocks protein families:
    IPB001723 Steroid hormone receptor signature
    IPB003079 Nuclear receptor ROR family (1F nuclear receptor) signature


    UniProtKB/Swiss-Prot: RORG_HUMAN, P51449
    Similarity: Belongs to the nuclear hormone receptor family. NR1 subfamily
    Similarity: Contains 1 nuclear receptor DNA-binding domain


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    Function Summary:

         UniProtKB/Swiss-Prot: RORG_HUMAN, P51449
    Function: Possible nuclear receptor for hydroxycholesterols, the binding of which strongly promotes coactivators
    recruitment. Essential for thymopoiesis and the development of several secondary lymphoid tissues, including lymph
    nodes. Involved in lineage specification of uncommitted CD4(+) T-helper cells into Th17 cells. Regulate the expression
    of several components of the circadian clock

         Genatlas biochemistry entry for RORC:
    RAR related orphan receptor,ligand activated transcription factor,highly expressed in skeletal muscle,steroid/thyroid
    retinoic receptor superfamily

    miRNA
    Products:
        
    OriGene 3'-UTR Clone (see all 2): RORC
    Browse MicroRNA Expression Plasmids
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat RORC
    8/38 QIAGEN miScript miRNA Assays for microRNAs that regulate RORC (see all 38):
    hsa-miR-607 hsa-let-7d hsa-miR-106a hsa-miR-519a hsa-miR-3921 hsa-miR-10b* hsa-miR-4314 hsa-let-7g
    SwitchGear 3'UTR luciferase reporter plasmidRORC 3' UTR sequence
    Inhib. RNA
    Products:
        
    Browse for Gene Knock-down Tools from EMD Millipore
    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for RORC (see all 4)
    OriGene shRNA RFP: RORC
    OriGene siRNA: RORC
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat RORC

    Gene Editing
    Products:
    DNA2.0 Custom Protein Engineering Service for RORC

    Clone
    Products:
         
    Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for RORC (see all 3)
    OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for RORC (see all 3)
    OriGene custom cloning services – gene synthesis, subcloning, mutagenesis, variant library, vector shuttling 
    GenScript: all cDNA clones in your preferred vector (see all 2): RORC (NM_005060)
    Sino Biological Human cDNA Clone for RORC
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for RORC
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat RORC 

    Cell Line
    Products:
         
    GenScript Custom overexpressing Cell Line Services for RORC
    Search LifeMap BioReagents cell lines for RORC

    In Situ Assay
    Products:
       

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RORC

    Gene Ontology (GO): 5/6 molecular function terms (GO ID links to tree view) (see all 6):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003677DNA binding TAS7811290
    GO:0003707steroid hormone receptor activity IEA--
    GO:0004879ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity IEA--
    GO:0005515protein binding ----
    GO:0008270zinc ion binding IEA--


    RORC for ontologies           About GeneDecksing


    1 GenomeRNAi human phenotype for RORC:
     Increased cell number in G1, a 

    Animal Models:
         Mouse knock-outs for RORC: Rorctm1Litt Rorctm1Amj
         8 MGI mutant phenotypes (inferred from 4 alleles(MGI details for Rorc):
     cellular  digestive/alimentary  growth/size  hematopoietic system  homeostasis/metabolism 
     immune system  mortality/aging  no phenotypic analysis 

    RORC for phenotypes           About GeneDecksing


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section

    Unified GeneCards pathways - 5/7 super-pathways (see all 7About this table 
    See pathways by source

    Super-pathwaycontained gene-specific pathways
    1Mucin expression in CF via IL-6, IL-17 signaling pathways
    Mucin expression in CF via IL-6, IL-17 signaling pathways1.00
    Cytokine production by Th17 cells in CF (Mouse model)0.37
    Cytokine production by Th17 cells in CF0.45
    2Nuclear Receptor transcription pathway
    Nuclear Receptor transcription pathway1.00
    Nuclear Receptors0.68
    3Generic Transcription Pathway
    Generic Transcription Pathway1.00
    Gene Expression0.46
    4Th17 Differentiation
    Th17 Differentiation1.00
    IL-21 Signaling and its Primary Biological Effects in Different Immune Cell Types0.47
    5Circadian rhythm - mammal
    Circadian rhythm - mammal1.00

    Pathway sources
    See GeneCards unified pathways
    Show all pathways

    2 R&D Systems Pathways for RORC
        IL-21 Signaling and its Primary Biological Effects in Different Immune Cell Types
    Th17 Differentiation

    1 Downloadable PowerPoint Slide of QIAGEN Pathway Central Maps for RORC
        Melatonin Signaling

    4 GeneGo (Thomson Reuters) Pathways for RORC
        Cytokine production by Th17 cells in CF (Mouse model)
    Cytokine production by Th17 cells in CF
    Mucin expression in CF via IL-6, IL-17 signaling pathways
    Immune response IL-23 signaling pathway

    1 BioSystems Pathway for RORC 
        Nuclear Receptors

    3        Reactome Pathways for RORC
        Generic Transcription Pathway
    Nuclear Receptor transcription pathway
    Gene Expression


    1         Kegg Pathway  (Kegg details for RORC):
        Circadian rhythm - mammal


    RORC for pathways           About GeneDecksing

    Interactions:

        SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for RORC

    STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

    5/56 Interacting proteins for RORC (P514493 ENSP000003270254) via UniProtKB, MINT, STRING, and/or I2D (see all 56)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    EIF4EBP1Q135413, ENSP000003406914I2D: score=1 STRING: ENSP00000340691
    CHD4Q148393, ENSP000003495084I2D: score=1 STRING: ENSP00000349508
    NCOA6Q146863I2D: score=3 
    EIF3IQ133473I2D: score=1 
    EWSR1Q018443I2D: score=1 
    About this table

    Gene Ontology (GO): 5/10 biological process terms (GO ID links to tree view) (see all 10):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006367transcription initiation from RNA polymerase II promoter TAS--
    GO:0006468protein phosphorylation IEA--
    GO:0010467gene expression TAS--
    GO:0030154cell differentiation ----
    GO:0030522intracellular receptor mediated signaling pathway TAS7811290


    RORC for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for RORC
    Search CenterWatch for drugs/clinical trials and news about RORC / RORG 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for RORC gene (2 alternative transcripts): 
    NM_001001523.1  NM_005060.3  

    Unigene Cluster for RORC:

    RAR-related orphan receptor C
    Hs.256022  [show with all ESTs]
    Unigene Representative Sequence: NM_005060
    4 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000356728(uc001ezg.3 uc001ezh.3 uc010pdo.2 uc010pdp.2)
    ENST00000318247 ENST00000480719 ENST00000392697

    miRNA
    Products:
         
    OriGene 3'-UTR Clone (see all 2): RORC
    Browse OriGene MicroRNA Expression Plasmids
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat RORC
    8/38 QIAGEN miScript miRNA Assays for microRNAs that regulate RORC (see all 38):
    hsa-miR-607 hsa-let-7d hsa-miR-106a hsa-miR-519a hsa-miR-3921 hsa-miR-10b* hsa-miR-4314 hsa-let-7g
    SwitchGear 3'UTR luciferase reporter plasmidRORC 3' UTR sequence
    Inhib. RNA
    Products:
         
    Browse for Gene Knock-down Tools from EMD Millipore
    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for RORC (see all 4)
    OriGene shRNA RFP: RORC
    OriGene siRNA: RORC
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat RORC
    Clone
    Products:
         
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for RORC (see all 3)
    OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for RORC (see all 3)
    OriGene custom cloning services – gene synthesis, subcloning, mutagenesis, variant library, vector shuttling 
    GenScript: all cDNA clones in your preferred vector (see all 2): RORC (NM_005060)
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for RORC
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat RORC 
    Primer
    Products:
        
    OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for RORC
    Browse OriGene validated miRNA SYBR primer pairs
    SABiosciences RT2 qPCR Primer Assay in human, mouse, rat RORC
      QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat RORC
      Search QIAGEN QuantiFast Probe-based Assays in human, mouse, rat RORC

    Additional cDNA sequence: 

    AB307696.1 AF075096.1 AK097994.1 AK223137.1 AK298460.1 AK315662.1 AL834219.1 BC031554.1 
    BC110571.2 CR457436.1 HQ692834.1 U16997.1 

    4 DOTS entries:

    DT.211192  DT.102842425  DT.101976876  DT.121326057 

    24/71 AceView cDNA sequences (see all 71):

    BX091308 AK097994 BM856735 NM_001001523 BP368095 AK128522 BQ447902 BI256620 
    CD619720 BM967010 AA286679 CB150444 BM967033 AL834219 BU526834 H59326 
    BC031554 NM_005060 CR457436 BP356797 BP368501 BQ772251 CD619723 AA179004 

    GeneLoc Exon Structure

    5/6 Alternative Splicing Database (ASD) splice patterns (SP) for RORC (see all 6)    About this scheme

    ExUns: 1 ^ 2a · 2b ^ 3 ^ 4 ^ 5a · 5b ^ 6a · 6b ^ 7a · 7b ^ 8a · 8b ^ 9a · 9b ^ 10 ^ 11 ^ 12a · 12b
    SP1:        -     -     -                 -                 -           -                                             
    SP2:                    -                 -                 -           -                                             
    SP3:                                                        -                                                         
    SP4:                                                                                                                  
    SP5:                    -                                                                                             


    ECgene alternative splicing isoforms for RORC

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    RORC expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: --

    Microarray
    RNAseq (Illumina Body Map)
    (100×FPKM)½
    SAGE (Serial Analysis of Gene Expression)

    About this image
    See RORC Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for RORC

    SOURCE GeneReport for Unigene cluster: Hs.256022

    UniProtKB/Swiss-Prot: RORG_HUMAN, P51449
    Tissue specificity: Isoform 1 is widely expressed in many tissues, including liver and adipose, and highly expressed in
    skeletal muscle. Isoform 2 is primarily expressed in immature thymocytes

        SABiosciences Expression via Pathway-Focused PCR Arrays including RORC: 
              Innate & Adaptive Immune Responses in human mouse rat
              Th17 Response in human mouse rat
              Circadian Rhythms in human mouse rat
              T Helper Cell Differentiation in human mouse rat
              Allergy & Asthma in human mouse rat

    Primer
    Products:
    OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for RORC
    Browse OriGene validated miRNA SYBR primer pairs
    SABiosciences RT2 qPCR Primer Assay in human, mouse, rat RORC
    QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat RORC
    Search QIAGEN QuantiFast Probe-based Assays in human, mouse, rat RORC
    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RORC

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of animals.

    Orthologs for RORC gene from 5/15 species (see all 15)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    chicken
    (Gallus gallus)
    Aves LOC7773551 nuclear receptor ROR-gamma-like 68.47(n)
    65.96(a)
      777355  XM_003642708.1  XP_003642756.1 
    lizard
    (Anolis carolinensis)
    Reptilia RORC6
    --
    62(a)
    1 ↔ 1
    GL344174.1(18724-28943)
    zebrafish
    (Danio rerio)
    Actinopterygii si:dkey-80m2.26
    si:dkey-80m2.2
    46(a)
    1 ↔ 1
    16(19977008-20150570)
    fruit fly
    (Drosophila melanogaster)
    Insecta Hr466
    Hormone receptor-like in 46
    18(a)
    1 → many
    2R(6091617-6124853)
    worm
    (Caenorhabditis elegans)
    Secernentea nhr-236
    Nuclear hormone receptor family member nhr-23
    22(a)
    1 → many
    I(7214743-7221346)


    ENSEMBL Gene Tree for RORC (if available)
    TreeFam Gene Tree for RORC (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for RORC gene
    NR1D22  PPARD2  RORA2  NR1D12  PPARA2  RORB2  PPARG2  
    18/22 SIMAP similar genes for RORC using alignment to 4 protein entries:     RORG_HUMAN (see all proteins) (see all similar genes):
    NR1F3    NR3C2    VDR    HNF4G    PPARA    PPARG
    HNF4alpha    THRB    RORA    RORB    NR1F1    NR1F2
    NR1I3    NR1H3    ESR1    NR4A2    NR2C2    DKFZp779O0162

    RORC for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/694 NCBI SNPs in RORC are shown (see all 694    About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 1 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs792788721,2
    --123155768(+) CGGTGC/TCCAAT 3 -- ut31 us2k11Minor allele frequency- T:0.01EA 120
    rs1154955971,2
    C,--123155828(+) GCTGGC/TGGGCA 3 -- ut31 us2k11Minor allele frequency- T:0.01WA 118
    rs1407709861,2
    C,--123155870(+) CCTTCC/TGACTG 3 -- ut31 us2k10--------
    rs1508326641,2
    C,--123155987(+) CACCAC/TGGAAA 3 -- ut31 us2k10--------
    rs1124471161,2
    C--123156053(+) CAAGCC/TGTGGC 3 -- ut31 us2k11Minor allele frequency- T:0.50NA 2
    rs767672491,2
    C,--123156125(+) AGTCTG/ATATGT 3 -- ut31 us2k11Minor allele frequency- A:0.01WA 118
    rs1114759961,2
    C,--123156143(+) CTGTGC/TATGGA 3 -- ut31 us2k11Minor allele frequency- T:0.50NA 2
    rs120224961,2
    C,H--123156208(+) CATAAA/C/GAGGTT 5 -- ut31 us2k14NS EA 412
    rs1884868821,2
    C,--123156439(+) TCTGGA/GCTCTC 3 -- ut31 us2k10--------
    rs1929247901,2
    C,--123156466(+) CTTGAG/TCCATC 3 -- ut31 us2k10--------

    HapMap Linkage Disequilibrium report for RORC (151778547 - 151804348 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
    Database of Genomic Variants (DGV): 1 variation for RORC
         1 CNV: 5523

    SABiosciences Cancer Mutation PCR Assays
    QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing RORC
    DNA2.0 Custom Variant and Variant Library Synthesis for RORC

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    RORC for disorders           About GeneDecksing

    OMIM gene information: 602943    OMIM disorders: --

    15 diseases for RORC:    About MalaCards
    red color blindness    color blindness    anus neoplasm    spontaneous abortion
    contact dermatitis    allergic rhinitis    intrahepatic cholangiocarcinoma    lymphedema
    rhinitis    blindness    acne    dermatitis
    cholangiocarcinoma    gastric cancer    thyroiditis

    2 diseases from the University of Copenhagen DISEASES database for RORC:
    Red color blindness     Anus neoplasm
    Human Genome Epidemiology (HuGE) Navigator: RORC (3 documents)

    Export disorders for RORC gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for RORC gene, integrated from 9 sources (see all 51):
    (articles sorted by number of sources associating them with RORC)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. ROR gamma: the third member of ROR/RZR orphan receptor subfamily that is highly expressed in skeletal muscle. (PubMed id 7811290)1, 2, 3 Hirose T.... Jetten A.M. (1994)
    2. Structural basis for hydroxycholesterols as natural l igands of orphan nuclear receptor RORgamma. (PubMed id 20203100)1, 2 Jin L....Li Y. (2010)
    3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    4. Molecular screening and association studies of retinoid-related orphan receptor gamma (RORC): a positional and functional candidate for type 2 diabetes. (PubMed id 12855222)1, 9 Wang H....Elbein S.C. (2003)
    5. Genomic structure and chromosomal mapping of the nuclear orphan receptor ROR gamma (RORC) gene. (PubMed id 9403063)1, 9 Medvedev A....Jetten A.M. (1997)
    6. Possible genetic predisposition to lymphedema after br east cancer. (PubMed id 22404826)1 Newman B....Hayes S.C. (2012)
    7. Upstream stimulating factors regulate the expression o f RORgT in human lymphocytes. (PubMed id 22891280)1 Ratajewski M....Dastych J. (2012)
    8. A novel isoform of the orphan receptor RORgt suppresse s IL-17 production in human T cells. (PubMed id 22237416)1 Rauen T....Tsokos G.C. (2012)
    9. CD3-T cell receptor co-stimulation through SLAMF3 and SLAMF6 receptors enhances RORgt recruitment to the IL17A promoter in human T lym phocytes. (PubMed id 22989874)1 Chatterjee M....Tsokos G.C. (2012)
    10. Rarity of human T helper 17 cells is due to retinoic a cid orphan receptor-dependent mechanisms that limit their expansion. (PubMed id 22326581)1 Santarlasci V....Annunziato F. (2012)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 6097 HGNC: 10260 AceView: RORC Ensembl:ENSG00000143365 euGenes: HUgn6097
    ECgene: RORC Kegg: 6097 H-InvDB: RORC

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for RORC Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for RORC gene:
    Search GeneIP for patents involving RORC

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences),
    In Situ Hybridization Assays from
    Advanced Cell Diagnostics
    About This Section

     EMD Millipore Mono- and Polyclonal Antibodies for the study of RORC
     Browse Kits and Assays available from EMD Millipore
     Browse for Gene Knock-down Tools from EMD Millipore
     Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore
     Browse Purified and Recombinant Proteins at EMD Millipore
     Browse Small Molecules at EMD Millipore
     
     EMD Millipore Custom Antibody & Bulk Services
     EMD Millipore Preclinical / Clinical Development Services
     EMD Millipore Immunoassay Services
     EMD Millipore Target Screening & Profiling Services

      
     Antibodies for RORC (ROR gamma/RORC/NR1F3)   Browse Cell Culture Products  
     Browse ELISAs   Browse Flow Cytometry Kits  
     Browse Primer Pairs   Browse Kinase Activity Assays/Reagents  
     Browse ELISpot Kits/Development Modules   Browse TFB/Immunoprecipitation Assays  
     Browse Apoptosis Detection Kits/Reagents   Browse Ubiquitin Proteasome Pathway (UPP) Assay Kits/Reagents  
     Browse DNA Damage/Repair Kits/Reagents   Browse Multiplex/Array Assay Kits/Reagents  
     Browse Cell Selection/Detection Kits/Reagents   Browse Secondary Antibodies/Controls/Staining Reagents  
     Browse Phosphatase Activity Assays/Reagents   Browse Recombinant/Natural Proteins  
     Browse OriGene Antibodies   OriGene shRNA RFP for RORC  
     OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for RORC   OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for RORC  
     OriGene Protein Over-expression Lysate for RORC   Browse OriGene Fluorogenic Cell Assay Kits  
     OriGene siRNA for RORC   OriGene 3'-UTR Clone for RORC  
     OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for RORC   OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for RORC  
     Browse OriGene GFP tagged cDNA clones in CMV expression vector   Browse OriGene MicroRNA Expression Plasmids  
     Browse OriGene basic RS shRNAs   Browse OriGene validated miRNA SYBR primer pairs  
     OriGene Purified Protein for RORC   OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling  
     OriGene Custom Antibody Services for RORC   OriGene Custom Protein Services for RORC  
     OriGene Custom Immunoassay Development  

     
     
     QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat RORC
     QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing RORC
     QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat RORC
     QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat RORC
     Search QIAGEN QuantiFast Probe-based Assays in human, mouse, rat RORC
     QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat RORC
     GenScript Custom Purified and Recombinant Proteins Services for RORC GenScript cDNA clones with any tag delivered in your preferred vector for RORC
     GenScript Custom Assay Services for RORC GenScript Custom Superior Antibodies Services for RORC
     GenScript Custom overexpressing Cell Line Services for RORC CloneReady with Over 120,000 Genes
     Gene Synthesis: Any Gene in Any Vector Vector-based siRNA and miRNA, Ready for Transfection
     Gene Mutant Library, Variants up to 10^11 Plasmid Preparation
     Custom Peptide Services
     Search for Antibodies & Assays

     Regulatory tfbs in RORC promoter
     Search Chromatin IP Primers for RORC
     RT2 qPCR Primer Assay in human, mouse, rat RORC
     GNC Network for RORC
     SABiosciences PCR Arrays including human, mouse, rat RORC
     Search Tocris compounds for RORC
     Browse Sino Biological Proteins and Antibodies
     cDNA Clones for RORC
     Antibodies/Proteins Production Services
     Rabbit Monoclonal Antibody Platform
     Bulk Purchasing
     Search www.enzolifesciences.com for proteins, assays, substrates, inhibitors & antibodies
     Novus Tissue Slides
     RORC antibodies
     RORC proteins
     RORC lysates
     Antibodies for RORC
     See all of Abcam's Antibodies, Kits and Proteins for RORC
     Custom Antibody / Protein Production Service
     Bulk Purchasing
     Advantages of Rabbit Monoclonal antibodies
     Abcam protocols and scientific support
     Recombinant Protein for RORC




     Browse ELISAs, CLIAs, Proteins, and Antibodies at Uscn
     Search LifeMap BioReagents cell lines for RORC
     Gene Synthesis
     Protein Engineering
     Variant Library Synthesis
     Codon Optimization
     Protein Production and Purification
     Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RORC
     SwitchGear 3'UTR luciferase reporter plasmids for RORC
     SwitchGear Promoter luciferase reporter plasmids for RORC
     ThermoFisher Antibodies for RORC
     Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat RORC
           
    GeneCards Homepage - Last full update: 18 Mar 2013 - Incrementals: 21 Mar 2013 , 15 Apr 2013 , 26 Apr 2013

    View Random Gene

    Category
    VWF
    (GIFTS: 73)
    von Willebrand factor
    GIFtS Group
    The GeneCards human gene database gene index: 1 3 5 6 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z 


    Developed at the Crown Human Genome Center, Department of Molecular Genetics, the Weizmann Institute of Science

    Hot genes      Disease genes      RORC gene at Home site.
    hostname: 356977-web1.xennexinc.com index build: 100 solr: 1.4