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Aliases for ROPN1L-AS1 Gene

Subcategory (RNA class) for ROPN1L-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ROPN1L-AS1 Gene

  • ROPN1L Antisense RNA 1 2 3 5
  • ROPN1L Antisense RNA 1 (Non-Protein Coding) 2

External Ids for ROPN1L-AS1 Gene

Summaries for ROPN1L-AS1 Gene

GeneCards Summary for ROPN1L-AS1 Gene

ROPN1L-AS1 (ROPN1L Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for ROPN1L-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ROPN1L-AS1 Gene

Genomics for ROPN1L-AS1 Gene

GeneHancer (GH) Regulatory Elements for ROPN1L-AS1 Gene

Promoters and enhancers for ROPN1L-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05I010440 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 550.8 +0.2 216 1.7 HDGF PKNOX1 SMAD1 ARID4B SIN3A DMAP1 ZNF2 POLR2B ZNF766 CBX5 ROPN1L ROPN1L-AS1
GH05I010248 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 10.2 +191.5 191490 4.1 CLOCK MLX ZFP64 DMAP1 YY1 ZNF213 E2F8 ZNF143 SP3 NFYC CCT5 FAM173B MARCH6 CMBL ENSG00000271980 ROPN1L ROPN1L-AS1 ENSG00000248968 GC05M010252
GH05I010562 Promoter/Enhancer 2.2 EPDnew FANTOM5 Ensembl ENCODE 10.5 -123.6 -123580 6.3 HDGF PKNOX1 SIN3A IRF4 ZNF121 GLIS2 ELK1 ZNF207 ATF7 KLF7 ANKRD33B ANKRD33B-AS1 ROPN1L ROPN1L-AS1 MARCH6 GC05M010581
GH05I010304 Promoter/Enhancer 2.5 EPDnew Ensembl ENCODE dbSUPER 9.2 +133.7 133651 6.6 HDGF PKNOX1 SMAD1 FOXA2 ARNT ARID4B SIN3A DMAP1 ZNF2 ZBTB7B CMBL MARCH6 ROPN1L ROPN1L-AS1 FAM173B CCT5 ENSG00000271980 LOC105374651 GC05M010284
GH05I010351 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 10.4 +87.9 87948 4.5 CLOCK ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF416 ZNF143 MARCH6 GC05M010353 LOC101929977 CMBL ROPN1L ROPN1L-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around ROPN1L-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ROPN1L-AS1 Gene

Genomic Locations for ROPN1L-AS1 Gene
chr5:10,440,735-10,441,851
(GRCh38/hg38)
Size:
1,117 bases
Orientation:
Minus strand
chr5:10,441,402-10,441,904
(GRCh37/hg19)

Genomic View for ROPN1L-AS1 Gene

Genes around ROPN1L-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ROPN1L-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ROPN1L-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ROPN1L-AS1 Gene

Proteins for ROPN1L-AS1 Gene

Post-translational modifications for ROPN1L-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ROPN1L-AS1 Gene

Domains & Families for ROPN1L-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ROPN1L-AS1 Gene

Function for ROPN1L-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ROPN1L-AS1 Gene

Localization for ROPN1L-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ROPN1L-AS1 Gene

Pathways & Interactions for ROPN1L-AS1 Gene

SuperPathways for ROPN1L-AS1 Gene

No Data Available

Interacting Proteins for ROPN1L-AS1 Gene

Gene Ontology (GO) - Biological Process for ROPN1L-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ROPN1L-AS1 Gene

Drugs & Compounds for ROPN1L-AS1 Gene

No Compound Related Data Available

Transcripts for ROPN1L-AS1 Gene

mRNA/cDNA for ROPN1L-AS1 Gene

(3) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ROPN1L-AS1 Gene

ROPN1L antisense RNA 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ROPN1L-AS1 Gene

No ASD Table

Relevant External Links for ROPN1L-AS1 Gene

GeneLoc Exon Structure for
ROPN1L-AS1
ECgene alternative splicing isoforms for
ROPN1L-AS1

Expression for ROPN1L-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ROPN1L-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for ROPN1L-AS1 Gene

This gene is overexpressed in Testis (x50.7).

SOURCE GeneReport for Unigene cluster for ROPN1L-AS1 Gene:

Hs.599395
genes like me logo Genes that share expression patterns with ROPN1L-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ROPN1L-AS1 Gene

Orthologs for ROPN1L-AS1 Gene

Evolution for ROPN1L-AS1 Gene

ENSEMBL:
Gene Tree for ROPN1L-AS1 (if available)
TreeFam:
Gene Tree for ROPN1L-AS1 (if available)

No data available for Orthologs for ROPN1L-AS1 Gene

Paralogs for ROPN1L-AS1 Gene

No data available for Paralogs for ROPN1L-AS1 Gene

Variants for ROPN1L-AS1 Gene

Sequence variations from dbSNP and Humsavar for ROPN1L-AS1 Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs1000179500 -- 10,443,393(-) C/T upstream_transcript_variant
rs1001230631 -- 10,442,860(-) T/A upstream_transcript_variant
rs1001240686 -- 10,443,198(-) T/A upstream_transcript_variant
rs1002231582 -- 10,441,749(-) C/T non_coding_transcript_variant
rs1002685578 -- 10,443,077(-) G/A upstream_transcript_variant

Additional Variant Information for ROPN1L-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ROPN1L-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ROPN1L-AS1 Gene

Disorders for ROPN1L-AS1 Gene

Additional Disease Information for ROPN1L-AS1

No disorders were found for ROPN1L-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ROPN1L-AS1 Gene

Publications for ROPN1L-AS1 Gene

  1. Creation of genome-wide protein expression libraries using random activation of gene expression. (PMID: 11329013) Harrington JJ … Ducar M (Nature biotechnology 2001) 3 58

Products for ROPN1L-AS1 Gene

Sources for ROPN1L-AS1 Gene

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