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Aliases for ROPN1L-AS1 Gene

Subcategory (RNA class) for ROPN1L-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ROPN1L-AS1 Gene

  • ROPN1L Antisense RNA 1 2 3 5
  • ROPN1L Antisense RNA 1 (Non-Protein Coding) 2

External Ids for ROPN1L-AS1 Gene

Summaries for ROPN1L-AS1 Gene

GeneCards Summary for ROPN1L-AS1 Gene

ROPN1L-AS1 (ROPN1L Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ROPN1L-AS1 Gene

Genomics for ROPN1L-AS1 Gene

Regulatory Elements for ROPN1L-AS1 Gene

Enhancers for ROPN1L-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05F010606 1.2 FANTOM5 Ensembl ENCODE 27.2 -166.0 -165998 2.7 HDGF PKNOX1 WRNIP1 SIN3A FEZF1 ZNF2 ZNF766 CBX5 ZNF263 JUNB ROPN1L-AS1 CTD-2154B17.1 ENSG00000248525 LOC105374648 ANKRD33B ANKRD33B-AS1 LOC389273 ROPN1L LINC01513 ENSG00000251196
GH05F010248 0.2 ENCODE 26.3 +191.5 191491 4.1 HDGF PKNOX1 ARNT MLX CREB3L1 WRNIP1 ZFP64 ARID4B SIN3A DMAP1 ROPN1L-AS1 CCT5 LOC105374648 CTD-2154B17.1 ENSG00000250001 ENSG00000248525 SNHG18 MARCH6 CMBL ROPN1L
GH05F010507 0.7 ENCODE 16.3 -66.0 -66026 0.6 PKNOX1 ATF1 ARNT CREB3L1 FEZF1 ZNF766 ELK1 GATA2 FOS DEK ROPN1L-AS1 CTD-2154B17.1 LOC105374648 ENSG00000248525 ENSG00000250001 LOC101929412 LOC389273
GH05F010611 0.2 Ensembl 11 -169.9 -169850 0.6 HNF4G ID3 NR2C2 ANKRD33B ROPN1L-AS1 ROPN1L ENSG00000251196 GC05P010606 ANKRD33B-AS1
GH05F010588 0.9 Ensembl ENCODE 11 -148.1 -148094 3.5 HDGF PKNOX1 ARNT ZNF766 CBX5 KLF13 DEK JUNB REST KAT8 ANKRD33B ANKRD33B-AS1 ROPN1L ROPN1L-AS1 ENSG00000251196 GC05P010586 GC05P010606
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around ROPN1L-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for ROPN1L-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001275371 51 1601 HDGF PKNOX1 CREB3L1 ARID4B SIN3A DMAP1 ZNF2 ZNF766 CBX5 ZNF207

Genomic Location for ROPN1L-AS1 Gene

Chromosome:
5
Start:
10,440,735 bp from pter
End:
10,441,851 bp from pter
Size:
1,117 bases
Orientation:
Minus strand

Genomic View for ROPN1L-AS1 Gene

Genes around ROPN1L-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ROPN1L-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ROPN1L-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ROPN1L-AS1 Gene

Proteins for ROPN1L-AS1 Gene

Post-translational modifications for ROPN1L-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ROPN1L-AS1 Gene

Domains & Families for ROPN1L-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ROPN1L-AS1 Gene

Function for ROPN1L-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ROPN1L-AS1 Gene

Localization for ROPN1L-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ROPN1L-AS1 Gene

Pathways & Interactions for ROPN1L-AS1 Gene

SuperPathways for ROPN1L-AS1 Gene

No Data Available

Interacting Proteins for ROPN1L-AS1 Gene

Gene Ontology (GO) - Biological Process for ROPN1L-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ROPN1L-AS1 Gene

Transcripts for ROPN1L-AS1 Gene

mRNA/cDNA for ROPN1L-AS1 Gene

(3) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ROPN1L-AS1 Gene

ROPN1L antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ROPN1L-AS1 Gene

No ASD Table

Relevant External Links for ROPN1L-AS1 Gene

GeneLoc Exon Structure for
ROPN1L-AS1
ECgene alternative splicing isoforms for
ROPN1L-AS1

Expression for ROPN1L-AS1 Gene

mRNA expression in normal human tissues for ROPN1L-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for ROPN1L-AS1 Gene

This gene is overexpressed in Testis (x50.7).

SOURCE GeneReport for Unigene cluster for ROPN1L-AS1 Gene:

Hs.599395
genes like me logo Genes that share expression patterns with ROPN1L-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for ROPN1L-AS1 Gene

Orthologs for ROPN1L-AS1 Gene

Evolution for ROPN1L-AS1 Gene

ENSEMBL:
Gene Tree for ROPN1L-AS1 (if available)
TreeFam:
Gene Tree for ROPN1L-AS1 (if available)

No data available for Orthologs for ROPN1L-AS1 Gene

Paralogs for ROPN1L-AS1 Gene

No data available for Paralogs for ROPN1L-AS1 Gene

Variants for ROPN1L-AS1 Gene

Sequence variations from dbSNP and Humsavar for ROPN1L-AS1 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs1047426 -- 10,441,956(+) GTTGT(C/T)GGAGT upstream-variant-2KB, utr-variant-5-prime
rs112014572 -- 10,441,994(+) CCCGC(A/G)GAGGA upstream-variant-2KB, utr-variant-5-prime
rs112392570 -- 10,440,646(+) ATTCC(-/TT)TTTTT downstream-variant-500B, upstream-variant-2KB
rs11329466 -- 10,440,647(+) ATTCC(-/T)TTTTT downstream-variant-500B, upstream-variant-2KB
rs11372350 -- 10,443,366(+) TGTAA(-/A)TCCCA intron-variant, upstream-variant-2KB

Relevant External Links for ROPN1L-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ROPN1L-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ROPN1L-AS1 Gene

Disorders for ROPN1L-AS1 Gene

Relevant External Links for ROPN1L-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ROPN1L-AS1

No disorders were found for ROPN1L-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ROPN1L-AS1 Gene

Publications for ROPN1L-AS1 Gene

  1. Creation of genome-wide protein expression libraries using random activation of gene expression. (PMID: 11329013) Harrington J.J. … Ducar M. (Nat. Biotechnol. 2001) 3 64

Products for ROPN1L-AS1 Gene

Sources for ROPN1L-AS1 Gene

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