Free for academic non-profit institutions. Other users need a Commercial license

Aliases for ROPN1L-AS1 Gene

Subcategory (RNA class) for ROPN1L-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for ROPN1L-AS1 Gene

  • ROPN1L Antisense RNA 1 2 3 5
  • ROPN1L Antisense RNA 1 (Non-Protein Coding) 2

External Ids for ROPN1L-AS1 Gene

Summaries for ROPN1L-AS1 Gene

GeneCards Summary for ROPN1L-AS1 Gene

ROPN1L-AS1 (ROPN1L Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for ROPN1L-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ROPN1L-AS1 Gene

Genomics for ROPN1L-AS1 Gene

Regulatory Elements for ROPN1L-AS1 Gene

Enhancers for ROPN1L-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05H010606 1.6 FANTOM5 Ensembl ENCODE 25.6 -165.9 -165914 2.5 HDGF PKNOX1 ARNT SIN3A FEZF1 ZNF2 ZNF766 JUNB REST ZNF592 ROPN1L-AS1 ANKRD33B CTD-2154B17.1 LINC02221 ENSG00000248525 ANKRD33B-AS1 LINC02213 ROPN1L FAM173B LINC01513
GH05H010248 1.4 ENCODE dbSUPER 24.7 +191.5 191491 4.1 HDGF PKNOX1 FOXA2 MLX ARNT ZFP64 ARID4B SIN3A DMAP1 ZNF2 ROPN1L-AS1 CCT5 LINC02221 CTD-2154B17.1 ENSG00000248525 ENSG00000250001 MARCH6 CMBL ENSG00000271980 ROPN1L
GH05H010550 1.5 FANTOM5 Ensembl ENCODE 10 -109.8 -109782 3.1 PKNOX1 BRCA1 GLIS2 KLF7 FOS RUNX3 DEK SP3 REST SMARCB1 LINC02213 ANKRD33B-AS1 ROPN1L-AS1 ROPN1L ENSG00000279450 ENSG00000280017
GH05H010507 1 ENCODE 14.8 -66.0 -66026 0.6 PKNOX1 ATF1 ARNT FEZF1 TCF12 ZNF766 GATA2 ELK1 ATF7 FOS ROPN1L-AS1 CTD-2154B17.1 LINC02221 ENSG00000248525 ENSG00000250001 LINC02212 LINC02213
GH05H010304 1.6 Ensembl ENCODE dbSUPER 9.2 +133.7 133651 6.6 HDGF PKNOX1 FOXA2 ARNT ARID4B SIN3A DMAP1 ZNF2 ZBTB7B YY1 MARCH6 CMBL ROPN1L ROPN1L-AS1 FAM173B CCT5 ENSG00000271980 LOC105374651
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ROPN1L-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for ROPN1L-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000178068 -49 1001 HDGF PKNOX1 ATF1 ARID4B SIN3A DMAP1 GLI4 ZNF2 ZNF121 ZNF766

Genomic Locations for ROPN1L-AS1 Gene

Genomic Locations for ROPN1L-AS1 Gene
1,117 bases
Minus strand

Genomic View for ROPN1L-AS1 Gene

Genes around ROPN1L-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ROPN1L-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ROPN1L-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ROPN1L-AS1 Gene

Proteins for ROPN1L-AS1 Gene

Post-translational modifications for ROPN1L-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ROPN1L-AS1 Gene

Domains & Families for ROPN1L-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ROPN1L-AS1 Gene

Function for ROPN1L-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ROPN1L-AS1 Gene

Localization for ROPN1L-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ROPN1L-AS1 Gene

Pathways & Interactions for ROPN1L-AS1 Gene

SuperPathways for ROPN1L-AS1 Gene

No Data Available

Interacting Proteins for ROPN1L-AS1 Gene

Gene Ontology (GO) - Biological Process for ROPN1L-AS1 Gene


No data available for Pathways by source and SIGNOR curated interactions for ROPN1L-AS1 Gene

Drugs & Compounds for ROPN1L-AS1 Gene

No Compound Related Data Available

Transcripts for ROPN1L-AS1 Gene

mRNA/cDNA for ROPN1L-AS1 Gene

(3) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ROPN1L-AS1 Gene

ROPN1L antisense RNA 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ROPN1L-AS1 Gene

No ASD Table

Relevant External Links for ROPN1L-AS1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for ROPN1L-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ROPN1L-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for ROPN1L-AS1 Gene

This gene is overexpressed in Testis (x50.7).

SOURCE GeneReport for Unigene cluster for ROPN1L-AS1 Gene:

genes like me logo Genes that share expression patterns with ROPN1L-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ROPN1L-AS1 Gene

Orthologs for ROPN1L-AS1 Gene

Evolution for ROPN1L-AS1 Gene

Gene Tree for ROPN1L-AS1 (if available)
Gene Tree for ROPN1L-AS1 (if available)

No data available for Orthologs for ROPN1L-AS1 Gene

Paralogs for ROPN1L-AS1 Gene

No data available for Paralogs for ROPN1L-AS1 Gene

Variants for ROPN1L-AS1 Gene

Sequence variations from dbSNP and Humsavar for ROPN1L-AS1 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs1000179500 -- 10,443,393(+) CGAGG(C/T)GGGTG intron-variant, upstream-variant-2KB
rs1001230631 -- 10,442,860(+) AACAT(A/T)CCAAC intron-variant, upstream-variant-2KB
rs1001240686 -- 10,443,198(+) TTTTT(A/T)AATAA intron-variant, upstream-variant-2KB
rs1002231582 -- 10,441,749(+) CGCGG(C/T)TCTGA nc-transcript-variant, upstream-variant-2KB
rs1002685578 -- 10,443,077(+) TGGCT(A/G)GGCTT intron-variant, upstream-variant-2KB

Relevant External Links for ROPN1L-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ROPN1L-AS1 Gene

Disorders for ROPN1L-AS1 Gene

Relevant External Links for ROPN1L-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for ROPN1L-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ROPN1L-AS1 Gene

Publications for ROPN1L-AS1 Gene

  1. Creation of genome-wide protein expression libraries using random activation of gene expression. (PMID: 11329013) Harrington JJ … Ducar M (Nature biotechnology 2001) 3 60

Products for ROPN1L-AS1 Gene

Sources for ROPN1L-AS1 Gene

Loading form....