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ROPN1B Gene

protein-coding   GIFtS: 42
GCID: GC03P125688

Rhophilin Associated Tail Protein 1B

(Previous names: ropporin, rhophilin associated protein 1B)
  Search for ROPN1B
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Rhophilin Associated Tail Protein 1B1 2
Ropporin, Rhophilin Associated Protein 1B1 2
Rhophilin-Associated Protein 1B2 3
AKAP-Binding Sperm Protein Ropporin2
ropporin-1B2

External Ids:    HGNC: 319271   Entrez Gene: 1520152   Ensembl: ENSG000001145477   UniProtKB: Q9BZX43   

Export aliases for ROPN1B gene to outside databases

Previous GC identifers: GC03P127171 GC03P123068


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for ROPN1B Gene:
ROPN1B (rhophilin associated tail protein 1B) is a protein-coding gene. GO annotations related to this gene include cAMP-dependent protein kinase regulator activity and protein homodimerization activity. An important paralog of this gene is ROPN1L.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000003.11  NT_005612.17  NC_018914.2  
Regulatory elements:
   Regulatory transcription factor binding sites in the ROPN1B gene promoter:
         RFX1   NF-1   NF-1/L   Pax-5   GATA-2   CREB   c-Myb   Cart-1   RSRFC4   ATF6   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidROPN1B promoter sequence
   Search Chromatin IP Primers for ROPN1B

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat ROPN1B


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 3q21.2   Ensembl cytogenetic band:  3q21.2   HGNC cytogenetic band: 3q21.2

ROPN1B Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
ROPN1B gene location

GeneLoc information about chromosome 3         GeneLoc Exon Structure

GeneLoc location for GC03P125688:  view genomic region     (about GC identifiers)

Start:
125,687,987 bp from pter      End:
125,702,297 bp from pter
Size:
14,311 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., and/or eBioscience,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., and/or eBioscience, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, Cloud-Clone Corp, and/or others.)
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UniProtKB/Swiss-Prot: ROP1B_HUMAN, Q9BZX4 (See protein sequence)
Recommended Name: Ropporin-1B  
Size: 212 amino acids; 23964 Da
Subunit: Homodimer. Interacts with RHPN1. May interact with SPA17 (By similarity). Interacts with AKAP3
Miscellaneous: 'Ropporin' comes from the Japanese word 'oppo' which means 'tail'
Secondary accessions: D3DNA6 Q96BM7
Alternative splicing: 2 isoforms:  Q9BZX4-1   Q9BZX4-2   

Explore the universe of human proteins at neXtProt for ROPN1B: NX_Q9BZX4

Explore proteomics data for ROPN1B at MOPED


See ROPN1B Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

REFSEQ proteins: NP_001012337.1  
ENSEMBL proteins: 
 ENSP00000426271   ENSP00000251776   ENSP00000424457   ENSP00000425548   ENSP00000423058  
 ENSP00000421662   ENSP00000424447  

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(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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1 InterPro protein domain:
 IPR003117 cAMP_dep_PK_reg_su_I/II_a/b

Graphical View of Domain Structure for InterPro Entry Q9BZX4

ProtoNet protein and cluster: Q9BZX4

UniProtKB/Swiss-Prot: ROP1B_HUMAN, Q9BZX4
Domain: The RIIa domain mediates interaction with AKAP3
Similarity: Belongs to the ropporin family
Similarity: Contains 1 RIIa domain


Find genes that share domains with ROPN1B           About GenesLikeMe


(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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     Gene Ontology (GO): 4 molecular function terms:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005515protein binding IPI11278869
GO:0030159receptor signaling complex scaffold activity NAS11278869
GO:0042803protein homodimerization activity NAS11278869
GO:0046982protein heterodimerization activity IPI11278869
     
Find genes that share ontologies with ROPN1B           About GenesLikeMe


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(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Subcellular locations from UniProtKB/Swiss-Prot
ROP1B_HUMAN, Q9BZX4: Note=In the sperm tail, found in the principal piece and in the cytoplasmic droplet located
at the distal end of the midpiece. Inner surface of the fibrous sheath (By similarity)
Subcellular locations from COMPARTMENTS: 

CompartmentConfidence
cytosol2
nucleus2
extracellular1

Gene Ontology (GO): 2 cellular component terms:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005737cytoplasm IDA11278869
GO:0031514motile cilium IDA11278869

Find genes that share ontologies with ROPN1B           About GenesLikeMe


(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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    Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for ROPN1B
Interactions:

    Search GeneGlobe Interaction Network for ROPN1B

STRING Interaction Network Preview (showing 1 interactants - click image to see more details)

1 Interacting protein for ROPN1B (Q9BZX43 ENSP000002517764) via UniProtKB, MINT, STRING, and/or I2D
InteractantInteraction Details
GeneCardExternal ID(s)
AKAP3O759693, ENSP000002288504I2D: score=1 STRING: ENSP00000228850
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Gene Ontology (GO): Selected biological process terms (see all 7):    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0000910cytokinesis NAS11278869
GO:0007266Rho protein signal transduction TAS11278869
GO:0007283spermatogenesis NAS11278869
GO:0007340acrosome reaction NAS11278869
GO:0007342fusion of sperm to egg plasma membrane NAS11278869

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(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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Browse Tocris compounds for ROPN1B (ROP1B)



(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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REFSEQ mRNAs for ROPN1B gene: 
NM_001012337.1  

Unigene Cluster for ROPN1B:

Rhophilin associated tail protein 1B
Hs.663128  [show with all ESTs]
Unigene Representative Sequence: AK302014
10 Ensembl transcripts including schematic representations, and UCSC links where relevant:
ENST00000514116(uc010hsb.3) ENST00000251776(uc003eih.3) ENST00000504401
ENST00000513830 ENST00000511862 ENST00000511035 ENST00000508088 ENST00000510450(uc011bkg.2)
ENST00000505382 ENST00000511082(uc010hsc.3)
miRNA
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hsa-miR-141* hsa-miR-3647-3p
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Additional mRNA sequence: 

AF231410.1 AK302014.1 BC015413.1 BC141849.1 

7 DOTS entries:

DT.95169569  DT.92422267  DT.92422269  DT.92422268  DT.441723  DT.95186292  DT.120892359 

23 AceView cDNA sequences:

AF231410 BI831090 AL037365 BC015413 BM554135 BI828359 BG704322 BG771571 
BG719581 CB989847 BM559594 BI830464 BM552738 BG034740 BG719580 BG719672 
AA506126 BI826006 BI828708 AI016755 BE894254 BI560054 CD708847 

GeneLoc Exon Structure

4 Alternative Splicing Database (ASD) splice patterns (SP) for ROPN1B    About this scheme

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7a · 7b ^ 8a · 8b ^ 9
SP1:              -     -                                                   
SP2:                                                                        
SP3:                                                                        
SP4:              -     -     -                                             


ECgene alternative splicing isoforms for ROPN1B

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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ROPN1B expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: TGAGATCAGA
ROPN1B Expression
About this image


ROPN1B expression in embryonic tissues and stem cells    About this table
Data from LifeMap, the Embryonic Development and Stem Cells Database
 
 Testis (Reproductive System)    fully expand to see all 3 entries
         Leydig Cells Testis Interstitium
         Testis Interstitium
ROPN1B Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

ROPN1B Protein Expression

SOURCE GeneReport for Unigene cluster: Hs.663128
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(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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This gene was present in the common ancestor of chordates.

Orthologs for ROPN1B gene from Selected species (see all 8)    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
lizard
(Anolis carolinensis)
Reptilia --
Uncharacterized protein
78(a)
1 → many
1(78869602-78919632)
        Species with no ortholog for ROPN1B

ENSEMBL Gene Tree for ROPN1B (if available)
TreeFam Gene Tree for ROPN1B (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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Paralogs for ROPN1B gene
ROPN1L2  ROPN12  
6 SIMAP similar genes for ROPN1B using alignment to 5 protein entries:     ROP1B_HUMAN (see all proteins):
MT-ND1    NADH1    ndh1    ND1    ROPN1    ROPN1L

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(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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Selected SNPs for ROPN1B (see all 340)    About this table                                 

Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 3 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs1811992111,2
--125686154(+) AAGATA/CATTAT 1 -- us2k10--------
rs1459965451,2
--125686206(+) GAAGAG/TATTGG 1 -- us2k10--------
rs1389233771,2
C--125686408(+) AGCTA-/GTGACT 1 -- us2k10--------
rs44507571,2
C,A--125686456(+) TGGCCA/GTCCCC 1 -- us2k10--------
rs1396992431,2
C--125686553(+) ACAGGC/TTGTGA 1 -- us2k10--------
rs119168421,2
C,F,H--125686678(+) AGACCC/TTGGGT 1 -- us2k19Minor allele frequency- T:0.03NS EA NA CSA 1092
rs44507581,2
C,F,A,H--125686761(+) TTTCAA/TATGGG 1 -- us2k119Minor allele frequency- T:0.37NS EA NA WA CSA 932
rs1135901691,2
C,F--125686780(+) GACACG/AGGGTG 1 -- us2k11Minor allele frequency- A:0.50CSA 2
rs1456089381,2
--125686853(+) CAGGTA/GCGGTG 1 -- us2k10--------
rs1124542261,2
C--125686859(+) CGGTGG/ACTCAC 1 -- us2k13Minor allele frequency- A:0.22NA EA 242

HapMap Linkage Disequilibrium report for ROPN1B (125687987 - 125702297 bp)

Structural Variations
     Database of Genomic Variants (DGV) 4 variations for ROPN1B:    About this table    
Variant IDTypeSubtypePubMed ID
nsv3984CNV Loss18451855
nsv877410CNV Loss21882294
nsv829716CNV Gain+Loss17160897
dgv1491e1CNV Complex17122850

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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  --

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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PubMed articles for ROPN1B gene integrated from 10 sources:
(articles sorted by number of sources associating them with ROPN1B)
    Utopia: connect your pdf to the dynamic
world of online information

  1. Identification of sperm-specific proteins that interact with A-kinase anchoring proteins in a manner similar to the type II regulatory subunit of PKA. (PubMed id 11278869)1, 2 Carr D.W....Narumiya S. (J. Biol. Chem. 2001)
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S.... Malek J. (Genome Res. 2004)
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)
  4. Ropporin, a sperm-specific binding protein of rhophilin, that is localized in the fibrous sheath of sperm flagella. (PubMed id 10591629)1 Fujita A....Narumiya S. (J. Cell. Sci. 2000)

(in PubMed, OMIM, and NCBI Bookshelf)
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 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 152015 HGNC: 31927 AceView: LOC152015 Ensembl:ENSG00000114547 euGenes: HUgn152015
ECgene: ROPN1B H-InvDB: ROPN1B

(According to HUGE)
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  --

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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NameDescription
PharmGKB entry for ROPN1B Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
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Patent Information for ROPN1B gene:
Search GeneIP for patents involving ROPN1B

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, eBioscience, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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GeneCards Homepage - Last full update: 7 May 2014 - Incrementals: 9 May 2014 , 2 Jun 2014 , 26 Jun 2014 , 30 Jun 2014 , 21 Aug 2014 , 8 Sep 2014

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