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Aliases for ROPN1 Gene

Aliases for ROPN1 Gene

  • Rhophilin Associated Tail Protein 1 2 3 5
  • Cancer/Testis Antigen 91 2 3 4
  • Ropporin, Rhophilin Associated Protein 1 2 3
  • Rhophilin-Associated Protein 1A 3 4
  • ROPN1A 3 4
  • CT91 3 4
  • Testis Secretory Sperm-Binding Protein Li 239w 3
  • Outer Dense Fiber Of Sperm Tails 6 3
  • Ropporin-1A 3
  • Ropporin 3
  • RHPNAP1 3
  • ODF6 3

External Ids for ROPN1 Gene

Previous GeneCards Identifiers for ROPN1 Gene

  • GC03M123636
  • GC03M124969
  • GC03M125008
  • GC03M125170
  • GC03M121061

Summaries for ROPN1 Gene

Entrez Gene Summary for ROPN1 Gene

  • The protein encoded by this gene is found in the fibrous sheath of spermatazoa, where it interacts with rhophilin, a Rho GTPase binding protein. The encoded protein also can bind an A-kinase anchoring protein (AKAP110) and a calcium-binding tyrosine phosphorylation-regulated protein (CABYR). This protein may be involved in sperm motility and has been shown to be a cancer-testis antigen in hematologic malignancies. Several transcript variants, some protein-coding and some non-protein coding, have been found for this gene. [provided by RefSeq, Dec 2015]

GeneCards Summary for ROPN1 Gene

ROPN1 (Rhophilin Associated Tail Protein 1) is a Protein Coding gene. Among its related pathways are Signaling by GPCR and Signaling by Rho GTPases. An important paralog of this gene is ROPN1B.

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ROPN1 Gene

Genomics for ROPN1 Gene

Regulatory Elements for ROPN1 Gene

Enhancers for ROPN1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03G123960 1 ENCODE 16.7 +31.2 31155 1.9 PKNOX1 ARNT ARID4B E2F7 SIN3A DMAP1 ZNF48 YY1 GTF3C2 GLIS2 ROPN1 UMPS SEC22A CCDC14 MYLK
GH03G123652 1.8 FANTOM5 Ensembl ENCODE dbSUPER 8.8 +338.6 338649 2.3 ELF3 TBP PKNOX1 ZSCAN4 ARID4B DMAP1 ZNF48 RAD21 YY1 HSF1 MYLK MYLK-AS2 MYLK-AS1 HACD2 ROPN1 PIR59914
GH03G124032 1.3 Ensembl ENCODE 10.9 -41.4 -41375 2.9 PKNOX1 FOXA2 MLX SIN3A ARID4B DMAP1 ZNF2 YY1 SLC30A9 ZNF143 KALRN ROPN1 UMPS MIR5002
GH03G123641 1.5 Ensembl ENCODE dbSUPER 9.2 +350.2 350164 1.8 PKNOX1 MLX ARNT ARID4B SIN3A ZNF143 MXD4 REST PPARG KAT8 HACD2 ROPN1 PIR59914 MYLK-AS2
GH03G123732 1.3 Ensembl ENCODE dbSUPER 9.6 +257.9 257899 4.5 PKNOX1 FOXA2 SIN3A RAD21 RARA ELK1 ZNF366 FOS ZBTB11 NR2F2 ROPN1 LOC105369194 GC03P123815
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ROPN1 on UCSC Golden Path with GeneCards custom track

Promoters for ROPN1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000157540 -22 401

Genomic Location for ROPN1 Gene

Chromosome:
3
Start:
123,968,521 bp from pter
End:
123,992,178 bp from pter
Size:
23,658 bases
Orientation:
Minus strand

Genomic View for ROPN1 Gene

Genes around ROPN1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ROPN1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ROPN1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ROPN1 Gene

Proteins for ROPN1 Gene

  • Protein details for ROPN1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9HAT0-ROP1A_HUMAN
    Recommended name:
    Ropporin-1A
    Protein Accession:
    Q9HAT0
    Secondary Accessions:
    • D3DN99
    • Q9UF38

    Protein attributes for ROPN1 Gene

    Size:
    212 amino acids
    Molecular mass:
    23893 Da
    Quaternary structure:
    • Homodimer. Interacts with AKAP3 and RHPN1 (By similarity). May interact with SPA17.
    Miscellaneous:
    • Ropporin comes from the Japanese word oppo which means tail.

    Alternative splice isoforms for ROPN1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for ROPN1 Gene

Post-translational modifications for ROPN1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for ROPN1 Gene

Domains & Families for ROPN1 Gene

Protein Domains for ROPN1 Gene

Suggested Antigen Peptide Sequences for ROPN1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9HAT0

UniProtKB/Swiss-Prot:

ROP1A_HUMAN :
  • The RIIa domain mediates interaction with AKAP3.
  • Belongs to the ropporin family.
Domain:
  • The RIIa domain mediates interaction with AKAP3.
Family:
  • Belongs to the ropporin family.
genes like me logo Genes that share domains with ROPN1: view

No data available for Gene Families for ROPN1 Gene

Function for ROPN1 Gene

Gene Ontology (GO) - Molecular Function for ROPN1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 17551920
GO:0042802 identical protein binding IPI 25416956
genes like me logo Genes that share ontologies with ROPN1: view
genes like me logo Genes that share phenotypes with ROPN1: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ROPN1 Gene

Localization for ROPN1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ROPN1 Gene

Note=In the sperm tail, found in the principal piece and in the cytoplasmic droplet located at the distal end of the midpiece. Inner surface of the fibrous sheath (By similarity). .

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for ROPN1 gene
Compartment Confidence
nucleus 5
cytosol 2
cytoskeleton 1

Gene Ontology (GO) - Cellular Components for ROPN1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IDA 21630459
GO:0005737 cytoplasm IDA 18421703
genes like me logo Genes that share ontologies with ROPN1: view

Drugs & Compounds for ROPN1 Gene

No Compound Related Data Available

Transcripts for ROPN1 Gene

Unigene Clusters for ROPN1 Gene

Rhophilin associated tail protein 1:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ROPN1 Gene

No ASD Table

Relevant External Links for ROPN1 Gene

GeneLoc Exon Structure for
ROPN1
ECgene alternative splicing isoforms for
ROPN1

Expression for ROPN1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ROPN1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for ROPN1 Gene

This gene is overexpressed in Testis (x48.2).

Protein differential expression in normal tissues from HIPED for ROPN1 Gene

This gene is overexpressed in Ovary (35.8) and Testis (33.2).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for ROPN1 Gene



Protein tissue co-expression partners for ROPN1 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of ROPN1 Gene:

ROPN1

SOURCE GeneReport for Unigene cluster for ROPN1 Gene:

Hs.733553

mRNA Expression by UniProt/SwissProt for ROPN1 Gene:

Q9HAT0-ROP1A_HUMAN
Tissue specificity: Testis specific in adult. Overexpressed in hematologic tumor cells.
genes like me logo Genes that share expression patterns with ROPN1: view

Primer Products

No data available for Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ROPN1 Gene

Orthologs for ROPN1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for ROPN1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ROPN1 34 35
  • 99.37 (n)
dog
(Canis familiaris)
Mammalia LOC488013 34
  • 88.05 (n)
-- 35
  • 86 (a)
OneToMany
cow
(Bos Taurus)
Mammalia ROPN1 34 35
  • 86.95 (n)
mouse
(Mus musculus)
Mammalia Ropn1 34 16 35
  • 85.53 (n)
rat
(Rattus norvegicus)
Mammalia Ropn1 34
  • 85.22 (n)
oppossum
(Monodelphis domestica)
Mammalia -- 35
  • 85 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 35
  • 61 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 35
  • 77 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea CSA.4161 35
  • 38 (a)
OneToMany
Species where no ortholog for ROPN1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ROPN1 Gene

ENSEMBL:
Gene Tree for ROPN1 (if available)
TreeFam:
Gene Tree for ROPN1 (if available)

Paralogs for ROPN1 Gene

Paralogs for ROPN1 Gene

(2) SIMAP similar genes for ROPN1 Gene using alignment to 4 proteins:

genes like me logo Genes that share paralogs with ROPN1: view

Variants for ROPN1 Gene

Sequence variations from dbSNP and Humsavar for ROPN1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs1000096992 -- 123,972,805(+) ATATA(C/T)GAATT intron-variant
rs1000147937 -- 123,973,067(+) GGCTC(C/T)ACCCT intron-variant
rs1000732115 -- 123,985,356(+) TTATG(C/T)ATATG intron-variant
rs1000791034 -- 123,990,417(+) CCCTT(A/G)TAGAA intron-variant
rs1001103238 -- 123,986,206(+) AAACT(A/G)ATTTG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ROPN1 Gene

Variant ID Type Subtype PubMed ID
esv3568995 CNV loss 25503493
esv3597635 CNV gain 21293372
nsv460837 CNV gain 19166990
nsv591428 CNV gain 21841781
nsv965206 CNV duplication 23825009
nsv979871 CNV duplication 23825009

Variation tolerance for ROPN1 Gene

Residual Variation Intolerance Score: 65.9% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 2.62; 45.29% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for ROPN1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ROPN1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ROPN1 Gene

Disorders for ROPN1 Gene

Relevant External Links for ROPN1

Genetic Association Database (GAD)
ROPN1
Human Genome Epidemiology (HuGE) Navigator
ROPN1
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ROPN1

No disorders were found for ROPN1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ROPN1 Gene

Publications for ROPN1 Gene

  1. Kalirin: a novel genetic risk factor for ischemic stroke. (PMID: 20107840) Krug T. … Oliveira S.A. (Hum. Genet. 2010) 3 22 46 64
  2. A yeast two-hybrid system using Sp17 identified ropporin as a novel cancer-testis antigen in hematologic malignancies. (PMID: 17551920) Li Z. … Lim S.H. (Int. J. Cancer 2007) 3 4 22 64
  3. Identification of sperm-specific proteins that interact with A-kinase anchoring proteins in a manner similar to the type II regulatory subunit of PKA. (PMID: 11278869) Carr D.W. … Narumiya S. (J. Biol. Chem. 2001) 3 22 64
  4. Ropporin, a sperm-specific binding protein of rhophilin, that is localized in the fibrous sheath of sperm flagella. (PMID: 10591629) Fujita A. … Narumiya S. (J. Cell. Sci. 2000) 2 3 64
  5. Pooled-matrix protein interaction screens using Barcode Fusion Genetics. (PMID: 27107012) Yachie N. … Roth F.P. (Mol. Syst. Biol. 2016) 3 64

Products for ROPN1 Gene

Sources for ROPN1 Gene

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