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Aliases for RNY5 Gene

Subcategory (RNA class) for RNY5 Gene

Y RNA

Quality Score for this RNA gene is

2

Aliases for RNY5 Gene

  • RNA, Ro-Associated Y5 2 3
  • RNA, Y5 Small Cytoplasmic (Associated With Ro Protein) 2 3
  • Y5 3

External Ids for RNY5 Gene

ORGUL Members for RNY5 Gene

Previous GeneCards Identifiers for RNY5 Gene

  • GC07U990085
  • GC07P148029
  • GC07P148075
  • GC07P148269
  • GC07P148639
  • GC12M045570
  • GC12M045572

Summaries for RNY5 Gene

GeneCards Summary for RNY5 Gene

RNY5 (RNA, Ro-Associated Y5) is an RNA Gene, and is affiliated with the Y RNA class.

Additional gene information for RNY5 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNY5 Gene

Genomics for RNY5 Gene

GeneHancer (GH) Regulatory Elements for RNY5 Gene

Promoters and enhancers for RNY5 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07I148940 Enhancer 1.3 Ensembl ENCODE 550.8 -0.1 -87 2.8 PKNOX1 SMAD1 FOXA2 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 POLR2B GC07P148942 RNY5 ZNF783 ZNF398 ZNF777 ZNF767P LOC155060 ENSG00000271664 ZNF212 ZNF282
GH07I148958 Enhancer 0.6 ENCODE 0.4 +17.7 17658 1.6 HDGF L3MBTL2 ZNF335 IKZF1 GABPB1 NR2C1 PRDM10 ZFX NR2C2 MGA EZH2 PDIA4 C7orf33 GC07P148964 RNY5
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNY5 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the RNY5 gene promoter:

Genomic Locations for RNY5 Gene

Genomic Locations for RNY5 Gene
chr7:148,941,488-148,941,571
(GRCh38/hg38)
Size:
84 bases
Orientation:
Plus strand
chr12:45,569,742-45,581,252
(GRCh37/hg19)

Genomic View for RNY5 Gene

Genes around RNY5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNY5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNY5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNY5 Gene

Proteins for RNY5 Gene

Post-translational modifications for RNY5 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNY5 Gene

Domains & Families for RNY5 Gene

Gene Families for RNY5 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RNY5: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNY5 Gene

Function for RNY5 Gene

Molecular function for RNY5 Gene

GENATLAS Biochemistry:
small cytoplasmic ribonucleoprotein RY5,component of Ro ribunocleoprotein

Phenotypes From GWAS Catalog for RNY5 Gene

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNY5 Gene

Localization for RNY5 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNY5 Gene

Pathways & Interactions for RNY5 Gene

No Data Available

Interacting Proteins for RNY5 Gene

Gene Ontology (GO) - Biological Process for RNY5 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNY5 Gene

Drugs & Compounds for RNY5 Gene

(4) Drugs for RNY5 Gene - From: Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials

(2) Additional Compounds for RNY5 Gene - From: Novoseek

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
genes like me logo Genes that share compounds with RNY5: view

Expression for RNY5 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNY5 Gene

NURSA nuclear receptor signaling pathways regulating expression of RNY5 Gene:

RNY5
genes like me logo Genes that share expression patterns with RNY5: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNY5 Gene

Orthologs for RNY5 Gene

No data available for Orthologs and Evolution for RNY5 Gene

Paralogs for RNY5 Gene

No data available for Paralogs for RNY5 Gene

Variants for RNY5 Gene

Sequence variations from dbSNP and Humsavar for RNY5 Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs1002165083 -- 148,941,902(+) A/G downstream_transcript_variant
rs1002395181 -- 148,941,433(+) C/G upstream_transcript_variant
rs1002730555 -- 148,939,707(+) T/C upstream_transcript_variant
rs1002761856 -- 148,940,141(+) C/G upstream_transcript_variant
rs1002763417 -- 148,941,449(+) G/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for RNY5 Gene

Variant ID Type Subtype PubMed ID
esv2664029 CNV deletion 23128226
esv2671426 CNV deletion 23128226
nsv519634 CNV gain 19592680
nsv831183 CNV loss 17160897

Additional Variant Information for RNY5 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNY5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RNY5 Gene

Disorders for RNY5 Gene

Additional Disease Information for RNY5

No disorders were found for RNY5 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RNY5 Gene

Publications for RNY5 Gene

  1. Human Y5 RNA specializes a Ro ribonucleoprotein for 5S ribosomal RNA quality control. (PMID: 18056422) Hogg JR … Collins K (Genes & development 2007) 3 22 58
  2. Gene encoding human Ro-associated autoantigen Y5 RNA. (PMID: 8836182) Maraia R … Green ED (Nucleic acids research 1996) 3 22 58
  3. The human Y4 small cytoplasmic RNA gene is controlled by upstream elements and resides on chromosome 7 with all other hY scRNA genes. (PMID: 7520568) Maraia RJ … Darlington GJ (Nucleic acids research 1994) 2 3 58
  4. Neuropeptide Y induces gonadotropin-releasing hormone gene expression directly and through conditioned medium from mHypoE-38 NPY neurons. (PMID: 19371763) Dhillon SS … Belsham DD (Regulatory peptides 2009) 22 58
  5. Neuroprotective effects of neuropeptide Y-Y2 and Y5 receptor agonists in vitro and in vivo. (PMID: 19318226) Smiałowska M … Kajta M (Neuropeptides 2009) 22 58

Products for RNY5 Gene

Sources for RNY5 Gene

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