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Aliases for RNY5 Gene

Subcategory (RNA class) for RNY5 Gene

Y RNA

Quality Score for this RNA gene is

2

Aliases for RNY5 Gene

  • RNA, Ro-Associated Y5 2 3
  • RNA, Y5 Small Cytoplasmic (Associated With Ro Protein) 2 3
  • Y5 3

External Ids for RNY5 Gene

ORGUL Members for RNY5 Gene

Previous GeneCards Identifiers for RNY5 Gene

  • GC07U990085
  • GC07P148029
  • GC07P148075
  • GC07P148269
  • GC07P148639
  • GC12M045570
  • GC12M045572

Summaries for RNY5 Gene

GeneCards Summary for RNY5 Gene

RNY5 (RNA, Ro-Associated Y5) is an RNA Gene, and is affiliated with the Y RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNY5 Gene

Genomics for RNY5 Gene

Regulatory Elements for RNY5 Gene

Enhancers for RNY5 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07F148958 0.2 ENCODE 0.3 +17.7 17658 1.6 HDGF RNF2 L3MBTL2 IKZF1 GABPB1 ZFX NR2C2 MGA EZH2 PDIA4 C7orf33 GC07P148964 RNY5
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RNY5 on UCSC Golden Path with GeneCards custom track

Genomic Location for RNY5 Gene

Chromosome:
7
Start:
148,941,488 bp from pter
End:
148,941,571 bp from pter
Size:
84 bases
Orientation:
Plus strand

Genomic View for RNY5 Gene

Genes around RNY5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNY5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNY5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNY5 Gene

Proteins for RNY5 Gene

Post-translational modifications for RNY5 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNY5 Gene

Domains & Families for RNY5 Gene

Gene Families for RNY5 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RNY5: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNY5 Gene

Function for RNY5 Gene

Molecular function for RNY5 Gene

GENATLAS Biochemistry:
small cytoplasmic ribonucleoprotein RY5,component of Ro ribunocleoprotein

Animal Model Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNY5 Gene

Localization for RNY5 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNY5 Gene

Pathways & Interactions for RNY5 Gene

SuperPathways for RNY5 Gene

No Data Available

Interacting Proteins for RNY5 Gene

Gene Ontology (GO) - Biological Process for RNY5 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNY5 Gene

Drugs & Compounds for RNY5 Gene

(4) Drugs for RNY5 Gene - From: Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials

(2) Additional Compounds for RNY5 Gene - From: Novoseek

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
genes like me logo Genes that share compounds with RNY5: view

Transcripts for RNY5 Gene

mRNA/cDNA for RNY5 Gene

(1) Selected AceView cDNA sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RNY5 Gene

No ASD Table

Relevant External Links for RNY5 Gene

GeneLoc Exon Structure for
RNY5
ECgene alternative splicing isoforms for
RNY5

Expression for RNY5 Gene

mRNA expression in normal human tissues for RNY5 Gene

NURSA nuclear receptor signaling pathways regulating expression of RNY5 Gene:

RNY5
genes like me logo Genes that share expression patterns with RNY5: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RNY5 Gene

Orthologs for RNY5 Gene

No data available for Orthologs and Evolution for RNY5 Gene

Paralogs for RNY5 Gene

No data available for Paralogs for RNY5 Gene

Variants for RNY5 Gene

Sequence variations from dbSNP and Humsavar for RNY5 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs111962313 -- 148,940,736(+) AGAAT(A/G)GGATT upstream-variant-2KB
rs114617097 -- 148,939,721(+) TAACT(A/T)TTACA upstream-variant-2KB
rs114761619 -- 148,941,632(+) AGTAA(C/T)CTTTA downstream-variant-500B
rs116040848 -- 148,941,481(+) ACAGG(A/G)TAACA upstream-variant-2KB
rs116106874 -- 148,941,196(+) GCGCA(A/G)TTGCC upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for RNY5 Gene

Variant ID Type Subtype PubMed ID
esv2664029 CNV deletion 23128226
esv2671426 CNV deletion 23128226
nsv519634 CNV gain 19592680
nsv831183 CNV loss 17160897

Relevant External Links for RNY5 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNY5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RNY5 Gene

Disorders for RNY5 Gene

Relevant External Links for RNY5

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RNY5

No disorders were found for RNY5 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RNY5 Gene

Publications for RNY5 Gene

  1. Human Y5 RNA specializes a Ro ribonucleoprotein for 5S ribosomal RNA quality control. (PMID: 18056422) Hogg J.R. … Collins K. (Genes Dev. 2007) 3 22 64
  2. Gene encoding human Ro-associated autoantigen Y5 RNA. (PMID: 8836182) Maraia R. … Green E.D. (Nucleic Acids Res. 1996) 3 22 64
  3. The human Y4 small cytoplasmic RNA gene is controlled by upstream elements and resides on chromosome 7 with all other hY scRNA genes. (PMID: 7520568) Maraia R.J. … Darlington G.J. (Nucleic Acids Res. 1994) 2 3 64
  4. Discovery of trans-N-[1-(2-fluorophenyl)-3-pyrazolyl]-3-oxospiro[6-azaisobenzofuran-1(3H),1'-cyclohexane]-4'-carboxamide, a potent and orally active neuropeptide Y Y5 receptor antagonist. (PMID: 19720539) Haga Y. … Fukami T. (Bioorg. Med. Chem. 2009) 22 64
  5. Neuroprotective effects of neuropeptide Y-Y2 and Y5 receptor agonists in vitro and in vivo. (PMID: 19318226) SmiaA8owska M. … Kajta M. (Neuropeptides 2009) 22 64

Products for RNY5 Gene

Sources for RNY5 Gene

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