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Aliases for RNY4P28 Gene

Subcategory (RNA class) for RNY4P28 Gene

Y RNA

Aliases for RNY4P28 Gene

  • RNA, Ro-Associated Y4 Pseudogene 28 2 3 5

External Ids for RNY4P28 Gene

ORGUL Members for RNY4P28 Gene

Previous GeneCards Identifiers for RNY4P28 Gene

  • GC00U932978
  • GC13M060762

Summaries for RNY4P28 Gene

GeneCards Summary for RNY4P28 Gene

RNY4P28 (RNA, Ro-Associated Y4 Pseudogene 28) is a Pseudogene, and is affiliated with the Y RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNY4P28 Gene

Genomics for RNY4P28 Gene

Regulatory Elements for RNY4P28 Gene

Enhancers for RNY4P28 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH13F060167 0.2 ENCODE 0.3 +20.5 20499 0.1 DIAPH3-AS2 GC13M060166 RNY4P28 GC13M060188
GH13F060210 0.2 ENCODE 0.3 -23.1 -23119 0.4 HMBOX1 FOXJ2 RNY4P28 GC13M060188 LINC00434
GH13F060169 0.8 ENCODE 0.3 +18.2 18181 1.2 GATA3 DIAPH3-AS2 DIAPH3 GC13M060166 RNY4P28 GC13M060188
GH13F060171 0.6 ENCODE 0.3 +15.5 15517 0.7 DIAPH3-AS2 GC13M060166 RNY4P28 GC13M060188
GH13F060229 0.2 ENCODE 0.2 -42.0 -41992 0.2 TAL1 ATF2 ARID1B OSR2 JUND ATF3 IKZF1 GLIS1 MAFK SP7 DIAPH3 LINC00434 RNY4P28 GC13M060188
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RNY4P28 on UCSC Golden Path with GeneCards custom track

Genomic Location for RNY4P28 Gene

Chromosome:
13
Start:
60,187,738 bp from pter
End:
60,187,830 bp from pter
Size:
93 bases
Orientation:
Minus strand

Genomic View for RNY4P28 Gene

Genes around RNY4P28 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNY4P28 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNY4P28 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNY4P28 Gene

Proteins for RNY4P28 Gene

Post-translational modifications for RNY4P28 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNY4P28 Gene

Domains & Families for RNY4P28 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNY4P28 Gene

Function for RNY4P28 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNY4P28 Gene

Localization for RNY4P28 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNY4P28 Gene

Pathways & Interactions for RNY4P28 Gene

SuperPathways for RNY4P28 Gene

No Data Available

Interacting Proteins for RNY4P28 Gene

Gene Ontology (GO) - Biological Process for RNY4P28 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNY4P28 Gene

Transcripts for RNY4P28 Gene

mRNA/cDNA for RNY4P28 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNY4P28 Gene

No ASD Table

Relevant External Links for RNY4P28 Gene

GeneLoc Exon Structure for
RNY4P28
ECgene alternative splicing isoforms for
RNY4P28

Expression for RNY4P28 Gene

mRNA expression in normal human tissues for RNY4P28 Gene

NURSA nuclear receptor signaling pathways regulating expression of RNY4P28 Gene:

RNY4P28
genes like me logo Genes that share expression patterns with RNY4P28: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RNY4P28 Gene

Orthologs for RNY4P28 Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNY4P28 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia Y_RNA 35
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia Y_RNA 35
  • 88 (a)
OneToMany
Species where no ortholog for RNY4P28 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNY4P28 Gene

ENSEMBL:
Gene Tree for RNY4P28 (if available)
TreeFam:
Gene Tree for RNY4P28 (if available)

Paralogs for RNY4P28 Gene

No data available for Paralogs for RNY4P28 Gene

Variants for RNY4P28 Gene

Relevant External Links for RNY4P28 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNY4P28

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNY4P28 Gene

Disorders for RNY4P28 Gene

No disorders were found for RNY4P28 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNY4P28 Gene

Publications for RNY4P28 Gene

No publications were found for RNY4P28 Gene.

Products for RNY4P28 Gene

Sources for RNY4P28 Gene

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