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Aliases for RNY4P17 Gene

Subcategory (RNA class) for RNY4P17 Gene

Y RNA

Aliases for RNY4P17 Gene

  • RNA, Ro-Associated Y4 Pseudogene 17 2 3 5

External Ids for RNY4P17 Gene

ORGUL Members for RNY4P17 Gene

Previous GeneCards Identifiers for RNY4P17 Gene

  • GC00U922537
  • GC04U901074
  • GC04P169927

Summaries for RNY4P17 Gene

GeneCards Summary for RNY4P17 Gene

RNY4P17 (RNA, Ro-Associated Y4 Pseudogene 17) is a Pseudogene, and is affiliated with the Y RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNY4P17 Gene

Genomics for RNY4P17 Gene

Regulatory Elements for RNY4P17 Gene

Enhancers for RNY4P17 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH04F168877 1.5 FANTOM5 Ensembl ENCODE 10.1 -122.2 -122202 11.6 HDGF ZNF493 ZFP64 RARA EGR1 FOS ZNF202 ZNF680 ZNF654 ZBTB11 CBR4 HPF1 PALLD ENSG00000249609 ENSG00000251445 RNY4P17 RNU6-1336P ENSG00000249623 RNU6-853P LOC102723331
GH04F168583 1.1 Ensembl ENCODE 10.5 -418.5 -418455 6.7 TBP CTCF TAF1 JUN RAD21 GATA3 ZBTB48 ZNF366 ZNF547 SMC3 ENSG00000249623 PALLD RNU6-1336P CBR4 ENSG00000251445 RNY4P17 DDX60 GC04P168581 BTF3L4P4
GH04F169030 0.9 Ensembl ENCODE 11.1 +25.7 25744 0.8 ATF1 PKNOX1 ETV1 ZNF384 ZNF644 JUND ATF3 PBX2 ZNF652 TRIM28 CBR4 ENSG00000251445 RNY4P17 PIR52720 GC04P169015
GH04F168923 0.8 ENCODE 11.4 -81.3 -81332 1.2 CTCF TEAD4 RAD21 RFX5 TEAD3 RELA POLR2A ZNF143 SMC3 GATAD2A RNY4P17 CBR4 ENSG00000251445 RNU6-853P PIR45004
GH04F169183 0.9 Ensembl ENCODE 9.8 +179.9 179898 2.3 CTCF ZNF362 MNT ZNF341 PRDM10 MAFK WT1 PRDM1 TRIM28 SP7 SH3RF1 RNY4P17 ENSG00000251445 CBR4 LOC105377528 GC04P169167
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RNY4P17 on UCSC Golden Path with GeneCards custom track

Genomic Location for RNY4P17 Gene

Chromosome:
4
Start:
169,005,249 bp from pter
End:
169,005,344 bp from pter
Size:
96 bases
Orientation:
Plus strand

Genomic View for RNY4P17 Gene

Genes around RNY4P17 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNY4P17 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNY4P17 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNY4P17 Gene

Proteins for RNY4P17 Gene

Post-translational modifications for RNY4P17 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNY4P17 Gene

Domains & Families for RNY4P17 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNY4P17 Gene

Function for RNY4P17 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNY4P17 Gene

Localization for RNY4P17 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNY4P17 Gene

Pathways & Interactions for RNY4P17 Gene

SuperPathways for RNY4P17 Gene

No Data Available

Interacting Proteins for RNY4P17 Gene

Gene Ontology (GO) - Biological Process for RNY4P17 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNY4P17 Gene

Transcripts for RNY4P17 Gene

mRNA/cDNA for RNY4P17 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNY4P17 Gene

No ASD Table

Relevant External Links for RNY4P17 Gene

GeneLoc Exon Structure for
RNY4P17
ECgene alternative splicing isoforms for
RNY4P17

Expression for RNY4P17 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNY4P17 Gene

NURSA nuclear receptor signaling pathways regulating expression of RNY4P17 Gene:

RNY4P17
genes like me logo Genes that share expression patterns with RNY4P17: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RNY4P17 Gene

Orthologs for RNY4P17 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for RNY4P17 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia Y_RNA 35
  • 97 (a)
OneToOne
Species where no ortholog for RNY4P17 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNY4P17 Gene

ENSEMBL:
Gene Tree for RNY4P17 (if available)
TreeFam:
Gene Tree for RNY4P17 (if available)

Paralogs for RNY4P17 Gene

No data available for Paralogs for RNY4P17 Gene

Variants for RNY4P17 Gene

Relevant External Links for RNY4P17 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNY4P17

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNY4P17 Gene

Disorders for RNY4P17 Gene

No disorders were found for RNY4P17 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNY4P17 Gene

Publications for RNY4P17 Gene

  1. Toward a complete human genome sequence. (PMID: 9847074) Sulston J.E. … Waterston R. (Genome Res. 1998) 3 64

Products for RNY4P17 Gene

Sources for RNY4P17 Gene

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