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Aliases for RNY4P16 Gene

Subcategory (RNA class) for RNY4P16 Gene


Aliases for RNY4P16 Gene

  • RNA, Ro-Associated Y4 Pseudogene 16 2 3 5

External Ids for RNY4P16 Gene

ORGUL Members for RNY4P16 Gene

Previous GeneCards Identifiers for RNY4P16 Gene

  • GC00U922521
  • GC01U902983
  • GC01P234974

Summaries for RNY4P16 Gene

GeneCards Summary for RNY4P16 Gene

RNY4P16 (RNA, Ro-Associated Y4 Pseudogene 16) is a Pseudogene, and is affiliated with the Y RNA class.

fRNAdb sequence ontologies for RNY4P16 Gene

  • Y RNA: Y RNAs are components of the Ro ribonucleoprotein particle (Ro RNP), in association with Ro60 and La proteins. The Y RNAs and Ro60 and La proteins are well conserved, but the function of the Ro RNP is not known. In humans the RNA component can be one of four small RNAs -- hY1, hY3, hY4 and hY5. These small RNAs are predicted to fold into a conserved secondary structure containing three stem structures. The largest of the four, hY1, contains an additional hairpin. This family includes a significant number of annotated pseudogenes and the model is expected to discriminate poorly between real and Y RNA related pseudogenes.

View fRNAdb secondary structures for RNY4P16

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RNY4P16 Gene

Genomics for RNY4P16 Gene

Regulatory Elements for RNY4P16 Gene

Enhancers for RNY4P16 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F234837 1.2 FANTOM5 Ensembl ENCODE 0.8 +4.0 4028 8.4 MLX CREB3L1 ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 RPS21P1 IRF2BP2 ENSG00000228830 GGPS1 GNG4 LDHAP2 LINC01354 RBM34 RNY4P16 PIR44809
GH01F234836 1.1 FANTOM5 Ensembl 0.8 -1.5 -1473 0.6 PKNOX1 PTRF BMI1 YBX1 RAD21 ZBTB40 YY1 ZNF766 ETV6 CREM IRF2BP2 RNY4P16 PIR47455
GH01F234838 0.2 Ensembl 0.8 -0.8 -773 0.4 RFX1 PKNOX1 L3MBTL2 HINFP RNF2 BHLHE40 ZIC2 ZNF83 CREB3 TFDP1 RNY4P16 PIR47455
GH01F234848 1.2 FANTOM5 Ensembl ENCODE 0.4 +13.0 13028 4.8 HDGF PKNOX1 WRNIP1 YY1 ZNF766 FOS ZNF263 REST TBX21 MEF2D IRF2BP2 RNY4P16 PIR44809
GH01F234822 0.6 ENCODE 0.4 -14.5 -14522 1.7 MLX ZNF133 RAD21 THRB ZNF48 ZNF766 GATA4 RCOR1 SMARCA5 TFDP1 TOMM20 RNY4P16 PIR47455
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RNY4P16 on UCSC Golden Path with GeneCards custom track

Genomic Location for RNY4P16 Gene

234,837,973 bp from pter
234,838,070 bp from pter
98 bases
Plus strand

Genomic View for RNY4P16 Gene

Genes around RNY4P16 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNY4P16 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNY4P16 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNY4P16 Gene

ORGUL Member Location for RNY4P16 Gene

ORGUL Member Location for RNY4P16 gene

Proteins for RNY4P16 Gene

Post-translational modifications for RNY4P16 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNY4P16 Gene

Domains & Families for RNY4P16 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNY4P16 Gene

Function for RNY4P16 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNY4P16 Gene

Localization for RNY4P16 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNY4P16 Gene

Pathways & Interactions for RNY4P16 Gene

SuperPathways for RNY4P16 Gene

No Data Available

Interacting Proteins for RNY4P16 Gene

Gene Ontology (GO) - Biological Process for RNY4P16 Gene


No data available for Pathways by source and SIGNOR curated interactions for RNY4P16 Gene

Transcripts for RNY4P16 Gene

fRNAdb Secondary structures for RNY4P16 Gene

  • RF00019;Y_RNA;AEKP01210478.1/189-96

mRNA/cDNA for RNY4P16 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNY4P16 Gene

No ASD Table

Relevant External Links for RNY4P16 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for RNY4P16 Gene

mRNA expression in normal human tissues for RNY4P16 Gene

NURSA nuclear receptor signaling pathways regulating expression of RNY4P16 Gene:

genes like me logo Genes that share expression patterns with RNY4P16: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RNY4P16 Gene

Orthologs for RNY4P16 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for RNY4P16 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia Y_RNA 35
  • 74 (a)
Species where no ortholog for RNY4P16 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNY4P16 Gene

Gene Tree for RNY4P16 (if available)
Gene Tree for RNY4P16 (if available)

Paralogs for RNY4P16 Gene

No data available for Paralogs for RNY4P16 Gene

Variants for RNY4P16 Gene

Relevant External Links for RNY4P16 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNY4P16 Gene

Disorders for RNY4P16 Gene

No disorders were found for RNY4P16 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNY4P16 Gene

Publications for RNY4P16 Gene

  1. Conserved features of Y RNAs: a comparison of experimentally derived secondary structures. (PMID: 10606662) Teunissen S.W. … Pruijn G.J. (Nucleic Acids Res. 2000) 1
  2. Ro ribonucleoproteins contribute to the resistance of Deinococcus radiodurans to ultraviolet irradiation. (PMID: 10766734) Chen X. … Wolin S.L. (Genes Dev. 2000) 1
  3. Caenorhabditis elegans embryos contain only one major species of Ro RNP. (PMID: 7489501) Van Horn D.J. … Wolin S.L. (RNA 1995) 1

Products for RNY4P16 Gene

Sources for RNY4P16 Gene

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