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Aliases for RNY4 Gene

Subcategory (RNA class) for RNY4 Gene


Quality Score for this RNA gene is


Aliases for RNY4 Gene

  • RNA, Ro-Associated Y4 2 3 5
  • RNA, Y4 Small Cytoplasmic (Associated With Ro Protein) 2 3
  • HY4 3
  • Y4 3

External Ids for RNY4 Gene

ORGUL Members for RNY4 Gene

Previous GeneCards Identifiers for RNY4 Gene

  • GC07U990084
  • GC07P148292
  • GC07P148663
  • GC07P142739

Summaries for RNY4 Gene

GeneCards Summary for RNY4 Gene

RNY4 (RNA, Ro-Associated Y4) is an RNA Gene, and is affiliated with the Y RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNY4 Gene

Genomics for RNY4 Gene

Regulatory Elements for RNY4 Gene

Enhancers for RNY4 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07F148965 1 Ensembl ENCODE 0.8 +3.4 3364 1.8 ATF1 PKNOX1 ZFP64 ARID4B SIN3A DMAP1 ZNF48 ZNF2 GTF3C2 ZNF121 ZNF212 ZNF282 ZNF398 ENSG00000271664 ZNF786 ZNF783 ZNF777 PDIA4 RNY4 GC07P149005
GH07F148962 1.1 ENCODE 0.8 +0.3 283 2.6 HDGF PKNOX1 ARNT ZFP64 ARID4B SIN3A YBX1 DMAP1 ZNF2 YY1 ZNF398 ZNF282 ZNF777 ZNF786 ZNF212 ENSG00000271664 EZH2 PDIA4 ZNF783 C7orf33
GH07F148972 0.4 Ensembl 0.4 +9.3 9294 0.5 PKNOX1 MCM3 ZNF493 ZFP64 ZBTB11 ZNF140 ZMYM3 CEBPB ZBTB8A REST ZNF767P ZNF862 LOC155060 ZNF783 ZNF212 ENSG00000271664 ATP6V0E2-AS1 ZNF777 RN7SL521P ZNF398
GH07F148975 0.5 ENCODE 0.4 +13.3 13279 1.3 BCOR TBP PKNOX1 GTF3C2 ZNF143 THAP11 SMARCA5 RFX1 HCFC1 SIX5 ZNF212 ZNF282 ZNF398 ENSG00000271664 ZNF783 GC07P149005 RNY4
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RNY4 on UCSC Golden Path with GeneCards custom track

Promoters for RNY4 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

Genomic Location for RNY4 Gene

148,963,315 bp from pter
148,963,410 bp from pter
96 bases
Plus strand

Genomic View for RNY4 Gene

Genes around RNY4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNY4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNY4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNY4 Gene

Proteins for RNY4 Gene

Post-translational modifications for RNY4 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNY4 Gene

Domains & Families for RNY4 Gene

Gene Families for RNY4 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RNY4: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNY4 Gene

Function for RNY4 Gene

Molecular function for RNY4 Gene

GENATLAS Biochemistry:
small cytoplasmic ribonucleoprotein RY4,component of Ro ribonucleoprotein

Animal Model Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNY4 Gene

Localization for RNY4 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNY4 Gene

Pathways & Interactions for RNY4 Gene

SuperPathways for RNY4 Gene

No Data Available

Interacting Proteins for RNY4 Gene

Gene Ontology (GO) - Biological Process for RNY4 Gene


No data available for Pathways by source and SIGNOR curated interactions for RNY4 Gene

Drugs & Compounds for RNY4 Gene

(1) Drugs for RNY4 Gene - From: Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials

(1) Additional Compounds for RNY4 Gene - From: Novoseek

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
genes like me logo Genes that share compounds with RNY4: view

Transcripts for RNY4 Gene

mRNA/cDNA for RNY4 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNY4 Gene

No ASD Table

Relevant External Links for RNY4 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for RNY4 Gene

mRNA expression in normal human tissues for RNY4 Gene

NURSA nuclear receptor signaling pathways regulating expression of RNY4 Gene:

genes like me logo Genes that share expression patterns with RNY4: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RNY4 Gene

Orthologs for RNY4 Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNY4 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia Y_RNA 35
  • 100 (a)
(Canis familiaris)
Mammalia Y_RNA 35
  • 99 (a)
(Bos Taurus)
Mammalia Y_RNA 35
  • 98 (a)
Species where no ortholog for RNY4 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNY4 Gene

Gene Tree for RNY4 (if available)
Gene Tree for RNY4 (if available)

Paralogs for RNY4 Gene

No data available for Paralogs for RNY4 Gene

Variants for RNY4 Gene

Sequence variations from dbSNP and Humsavar for RNY4 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs10236884 -- 148,962,524(+) AACTC(A/G)GTGAG upstream-variant-2KB
rs111362709 -- 148,963,706(+) CTGGT(A/C)TCCAA downstream-variant-500B
rs111595184 -- 148,962,859(+) AGTGC(A/C/G)TGCTC upstream-variant-2KB
rs112757583 -- 148,961,584(+) CAGGC(A/G)TGGTG upstream-variant-2KB
rs114473244 -- 148,963,214(+) TCATA(C/T)AATAT upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for RNY4 Gene

Variant ID Type Subtype PubMed ID
nsv831183 CNV loss 17160897

Relevant External Links for RNY4 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RNY4 Gene

Disorders for RNY4 Gene

Relevant External Links for RNY4

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for RNY4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RNY4 Gene

Publications for RNY4 Gene

  1. The human Y4 small cytoplasmic RNA gene is controlled by upstream elements and resides on chromosome 7 with all other hY scRNA genes. (PMID: 7520568) Maraia R.J. … Darlington G.J. (Nucleic Acids Res. 1994) 2 3 64
  2. Ro-associated Y RNAs in metazoans: evolution and diversification. (PMID: 17470436) Perreault J. … Boire G. (Mol. Biol. Evol. 2007) 3 64
  3. Comparative proteomic analysis of blue light signaling components in the Arabidopsis cryptochrome 1 mutant. (PMID: 17464191) Phee B.K. … Hahn T.R. (Mol. Cells 2007) 22 64
  4. PP7 is a positive regulator of blue light signaling in Arabidopsis. (PMID: 12724537) MA … Chua N.H. (Plant Cell 2003) 22 64
  5. Independent action of ELF3 and phyB to control hypocotyl elongation and flowering time. (PMID: 10759510) Reed J.W. … Millar A.J. (Plant Physiol. 2000) 22 64

Products for RNY4 Gene

Sources for RNY4 Gene

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