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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

RNY4 Gene

RNA gene   GIFtS: 18
GCID: GC07P148663

RNA, Ro-associated Y4

(Previous names: RNA, Y4 small cytoplasmic (associated with Ro protein)...)
  Search for RNY4
in
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 Human Malady Compendium 
Biological research products
for RNY4    

Aliases
for RNY4 gene

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section
Subcategory (RNA class): Y RNA

Quality score for this RNA gene is 6

Aliases
RNA, Ro-Associated Y41 2
HY41 2
Y42 5
RNA, Y4 Small Cytoplasmic (Associated With Ro Protein)1

External Ids:    HGNC: 102441   Entrez Gene: 60862   Ensembl: ENSG000002523167   OMIM: 6018235   
ORGUL members:    fRNAdb10:FR276350 FR007738 FR166637 FR007738 FR276350      
NCBI:X57566 AC073140 X57566 L32608 AC073140    
NONCODE:u246 u4912    
Rfam:RF00019    
RNAdb:LIT2021    

Export aliases for RNY4 gene to outside databases

Previous GC identifers: GC07U990084 GC07P148292 GC07P142739


Summaries
for RNY4 gene

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section
fRNAdb sequence ontologies for RNY4 - the ORGUL cluster for this gene includes several descriptions:
scRNA - Any one of several small cytoplasmic RNA molecules present in the cytoplasm and sometimes nucleus of a eukaryote.
Y_RNA -

View fRNAdb secondary structures for RNY4

Genomic Views
for RNY4 gene

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
 Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the RNY4 gene promoter:
         CREB   deltaCREB   
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
   Search SABiosciences Chromatin IP Primers for RNY4

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat RNY4


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 7q36   Ensembl cytogenetic band:  7q36.1   HGNC cytogenetic band: 7q36

RNY4 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
RNY4 gene location

GeneLoc information about chromosome 7         GeneLoc Exon Structure

GeneLoc location for GC07P148663:  view genomic region     (about GC identifiers)

Start:
 148,660,407 bp from pter      End:
 148,660,502 bp from pter
Size:
 96 bases      Orientation:
 plus strand

1 alternative location:
Chr7+,CRA_TCAG 147,998,801-147,998,896     
ORGUL member locations:
Legend (see complete legend)

  • FR0166637
  • FR0249079
  • FR0276350
  • FR0007738
148660406 148660453 148660500 chr7

Proteins
for RNY4 gene

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section
UniProtKB: --

Protein Domains /
Families
for RNY4 gene

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section
   --

Function
for RNY4 gene

(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
About This Section
Function Summary:
     Genatlas biochemistry entry for RNY4:
small cytoplasmic ribonucleoprotein RY4,component of Ro ribonucleoprotein

miRNA
Products:    		Browse 3'-UTR reporter clones for miRNA target validation
Browse MicroRNA Expression Plasmids
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat RNY4
Search QIAGEN for miScript miRNA Assays for microRNAs that regulate RNY4
Browse SwitchGear 3'UTR luciferase reporter plasmids
Inhib. RNA
Products:    		Browse for Gene Knock-down Tools from EMD Millipore
Browse OriGene 29mer shRNA kits
Browse OriGene siRNA
QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat RNY4

Gene Editing
Products:		DNA2.0 Custom Protein Engineering Service for RNY4

Clone
Products:     		Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore
Browse OriGene untagged/tagged cDNA clones in CMV expression vector
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
GenScript Custom all cDNA clones Services for RNY4
Browse Sino Biological Human cDNA Clones
DNA2.0 Custom Codon Optimized Gene Synthesis Service for RNY4
Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat RNY4 

Cell Line
Products:     		GenScript Custom overexpressing Cell Line Services for RNY4
Search LifeMap BioReagents cell lines for RNY4

In Situ Assay
Products:   
 		Search Advanced Cell Diagnostics for RNAscope RNA in situ hybridization assays for RNY4


Pathways & Interactions
for RNY4 gene

(Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
About This Section



Interactions:

    Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for RNY4

Drugs & Compounds
for RNY4 gene

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
About This Section

RNY4 for compounds           About GeneDecksing

Browse Small Molecules at EMD Millipore
Browse drugs & compounds from Enzo Life Sciences

Browse Tocris compounds for RNY4
2 Novoseek chemical compound relationships for RNY4 gene    About this table
Compound   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
phytochrome 74.9 1 9701582 (1)
nppb 69.5 2 9765547 (2)

Search CenterWatch for drugs/clinical trials and news about RNY4 

Transcripts
for RNY4 gene

(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from EMD Millipore,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
About This Section
 4 fRNAdb Secondary structures:


1 Ensembl transcript including schematic representation, and UCSC links where relevant:
ENST00000516507(misc_RNA)

miRNA
Products:     		Browse 3'-UTR reporter clones for miRNA target validation
Browse OriGene MicroRNA Expression Plasmids
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat RNY4
Search QIAGEN for miScript miRNA Assays for microRNAs that regulate RNY4
Browse SwitchGear 3'UTR luciferase reporter plasmids
Inhib. RNA
Products:     		Browse for Gene Knock-down Tools from EMD Millipore
Browse OriGene 29mer shRNA kits
Browse OriGene siRNA
QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat RNY4
Clone
Products:     		Browse OriGene untagged/tagged cDNA clones in CMV expression vector
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
GenScript Custom all cDNA clones Services for RNY4
DNA2.0 Custom Codon Optimized Gene Synthesis Service for RNY4
Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat RNY4 
Primer
Products:    		Browse OriGene genome-wide validated SYBR primer pairs
Browse OriGene validated miRNA SYBR primer pairs
Search SABiosciences RT2 qPCR Primer Assays in human, mouse, rat RNY4
  Search QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat RNY4
  Search QIAGEN QuantiFast Probe-based Assays in human, mouse, rat RNY4

GeneLoc Exon Structure


Expression
for RNY4 gene

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

Expression evidence for RNY4:RNAdb

RNY4 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: --

Microarray
RNAseq (Illumina Body Map)
(100×FPKM)½
SAGE (Serial Analysis of Gene Expression)
About this image

RNY4 expression in embryonic tissues and stem cells
Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine    About this table
Stem Cell Differentiation: 1 LifeMap Cell 
NameCategory
PureStem™ progenitor SK17 (Embryonic Progenitor Cell)
Expression: Positive    Negative     Selective marker
Experimental details: Curated     Microarrays     In-situ hybridization
    SABiosciences Custom PCR Arrays for RNY4
Primer
Products:		Browse OriGene genome-wide validated SYBR primer pairs
Browse OriGene validated miRNA SYBR primer pairs
Search SABiosciences RT2 qPCR Primer Assays in human, mouse, rat RNY4
Search QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat RNY4
Search QIAGEN QuantiFast Probe-based Assays in human, mouse, rat RNY4
In Situ
Assay Products: 
 		Search Advanced Cell Diagnostics for RNAscope RNA in situ hybridization assays for RNY4

Orthologs
for RNY4 gene

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
About This Section
   --

ENSEMBL Gene Tree for RNY4 (if available)
TreeFam Gene Tree for RNY4 (if available) 

Paralogs
for RNY4 gene

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
Paralogs for RNY4 gene
ENSG000001998012  ENSG000001995842  ENSG000002224322  ENSG000002070862  RNY5P12  ENSG000002066682  ENSG000002124042  ENSG000001999382  
ENSG000002018302  ENSG000002528202  ENSG000002526122  ENSG000002022112  ENSG000002017742  ENSG000002012972  ENSG000002518122  ENSG000002523412  
ENSG000001995912  ENSG000002067812  ENSG000002073822  ENSG000002001182  RNY4P192  ENSG000002022732  ENSG000002391062  ENSG000002522252  
ENSG000002521982  ENSG000001997402  ENSG000002023682  ENSG000002006102  ENSG000002068082  ENSG000002384762  ENSG000002221602  ENSG000002006462  
ENSG000002067172  ENSG000002010842  ENSG000001992732  ENSG000002023572  ENSG000002067562  ENSG000002012772  ENSG000002010712  RNY4P222  
ENSG000002227012  ENSG000002069142  ENSG000002069572  ENSG000002015352  ENSG000002070922  ENSG000002072832  ENSG000002232542  ENSG000002002092  
RNY4P152  ENSG000001993622  ENSG000002525272  ENSG000002070242  ENSG000001954012  ENSG000002003322  ENSG000002021412  ENSG000002014122  
RNY52  ENSG000001998842  ENSG000001993492  ENSG000002000082  ENSG000002528022  ENSG000002024122  ENSG000001998662  ENSG000002002622  
ENSG000002000902  ENSG000002526522  ENSG000002073632  ENSG000002066402  ENSG000002000652  ENSG000002067902  ENSG000002024382  ENSG000001999802  
ENSG000002019872  ENSG000002015472  ENSG000002529752  ENSG000001999492  ENSG000002002522  ENSG000002075122  ENSG000002069022  ENSG000002071312  
ENSG000001998992  ENSG000002220722  ENSG000002072102  ENSG000002016832  ENSG000002527592  ENSG000002018502  ENSG000002122412  ENSG000002386042  
RNY1P62  ENSG000002009532  ENSG000002068952  ENSG000002019002  ENSG000002387972  RNY3P32  ENSG000002019162  ENSG000001992042  
ENSG000002125562  RNY1P82  ENSG000002521152  ENSG000002228812  ENSG000002018602  ENSG000002527912  ENSG000002523572  ENSG000002526212  
ENSG000002010742  ENSG000002003912  ENSG000002384902  ENSG000002005792  ENSG000001998902  ENSG000002069982  ENSG000002068172  ENSG000001997552  
ENSG000001994322  ENSG000002125852  ENSG000002074502  ENSG000002069292  ENSG000002223952  ENSG000002067112  ENSG000002522502  ENSG000002020272  
RNY4P112  ENSG000002524202  ENSG000002015962  ENSG000002225292  ENSG000002009762  ENSG000002123062  ENSG000002070362  ENSG000002012042  
ENSG000002070752  ENSG000002008332  ENSG000002020672  ENSG000002022202  ENSG000002003252  ENSG000002387832  ENSG000001998402  ENSG000002231542  
ENSG000002015012  ENSG000002017412  ENSG000001994872  RNY4P82  ENSG000002003512  ENSG000002003612  ENSG000002014832  ENSG000002073652  
ENSG000002001742  ENSG000002016682  ENSG000001994662  ENSG000002018852  ENSG000002013542  ENSG000001996982  RNY4P162  ENSG000001999112  
ENSG000002015542  ENSG000002013112  ENSG000002073912  ENSG000002224932  ENSG000002016442  ENSG000002072822  ENSG000002000492  RNY3P42  
ENSG000002002612  ENSG000001995402  ENSG000002011342  ENSG000002016272  ENSG000002071322  ENSG000002124482  RNY4P12  ENSG000002529192  
ENSG000002524862  ENSG000002527842  ENSG000002072922  ENSG000002071612  ENSG000002023322  ENSG000002017232  ENSG000002072232  ENSG000001992902  
ENSG000002019382  ENSG000002071392  ENSG000002023822  ENSG000002072072  ENSG000002010062  ENSG000002123352  ENSG000002014322  ENSG000002524122  
ENSG000002222242  RNY4P232  ENSG000002015842  ENSG000002066992  ENSG000002066632  ENSG000001997972  ENSG000002123192  ENSG000002005022  
ENSG000002226142  ENSG000002000242  ENSG000002024072  ENSG000002068162  ENSG000002068052  RNY1P72  ENSG000002000662  ENSG000002225792  
ENSG000002022222  ENSG000002006622  ENSG000002019652  ENSG000002021692  ENSG000002517792  ENSG000001994422  ENSG000002070092  ENSG000002014212  
ENSG000002224212  ENSG000002517282  ENSG000002066902  ENSG000002010232  ENSG000002008882  ENSG000002521472  ENSG000002527612  ENSG000002067682  
ENSG000002223942  ENSG000002074842  ENSG000001994242  ENSG000002387492  ENSG000002020412  ENSG000002528222  ENSG000001997622  ENSG000002003972  
ENSG000002229972  ENSG000002004942  ENSG000002012072  ENSG000002385602  ENSG000002017862  ENSG000001997512  ENSG000002025142  ENSG000002524362  
ENSG000002523982  ENSG000002520642  ENSG000002025422  ENSG000002024762  ENSG000002072352  ENSG000002016762  ENSG000001992412  ENSG000001996412  
ENSG000002074732  ENSG000002123252  ENSG000001997642  ENSG000002000852  ENSG000002013782  ENSG000002527322  ENSG000002518672  ENSG000002067042  
ENSG000002067512  ENSG000002068462  ENSG000001994612  ENSG000002070392  ENSG000002231922  ENSG000002071512  ENSG000002006162  ENSG000002069952  
ENSG000002014642  ENSG000002004322  ENSG000002229412  RNY3P52  ENSG000002226982  ENSG000002013712  ENSG000002227672  ENSG000001942702  
ENSG000002008832  ENSG000002222062  ENSG000002069782  ENSG000002221922  ENSG000002384432  ENSG000002226582  ENSG000002125692  ENSG000002012282  
ENSG000002023182  ENSG000002390402  ENSG000002520472  ENSG000002006002  ENSG000002068242  ENSG000002385162  ENSG000002020722  ENSG000001993662  
ENSG000001994442  RNY4P62  ENSG000002024142  ENSG000002071052  ENSG000001997162  ENSG000002010132  ENSG000002015552  ENSG000001997012  
ENSG000002001642  ENSG000001997102  ENSG000002009802  ENSG000002074802  ENSG000002066762  ENSG000002074112  ENSG000001993572  ENSG000002023992  
ENSG000002073512  ENSG000002232712  ENSG000002016802  ENSG000002007542  ENSG000002528912  ENSG000002066772  ENSG000002003052  ENSG000002017492  
ENSG000002020142  ENSG000002228522  ENSG000002071272  ENSG000002010342  RNY4P282  ENSG000002005532  ENSG000002069502  ENSG000002067502  
ENSG000002229782  ENSG000002074082  ENSG000001992852  ENSG000001999122  ENSG000002228832  ENSG000002523672  ENSG000002013702  ENSG000002522022  
ENSG000002073032  ENSG000002072902  ENSG000002008842  ENSG000002018842  ENSG000002069512  ENSG000002070912  ENSG000001992142  ENSG000002528942  
ENSG000002069902  ENSG000002022552  ENSG000002007642  ENSG000002017562  ENSG000001995802  ENSG000002067142  ENSG000002074992  ENSG000002075252  
ENSG000001996362  ENSG000002012392  ENSG000002024102  ENSG000002000592  ENSG000002525852  ENSG000002518642  ENSG000002067342  ENSG000002073002  
ENSG000002022762  ENSG000002067132  ENSG000001994722  RNY4P132  ENSG000002390902  ENSG000002389262  ENSG000002230802  ENSG000002526702  
ENSG000002003142  ENSG000001996672  ENSG000002525242  ENSG000002069112  ENSG000002009222  ENSG000002070252  RNY4P202  ENSG000002072522  
ENSG000002389302  ENSG000002006582  ENSG000002072432  ENSG000002068622  ENSG000002016352  ENSG000002223352  ENSG000002024612  ENSG000002002872  
ENSG000002072652  ENSG000002019882  ENSG000001997112  ENSG000001995952  ENSG000001992242  ENSG000002072312  ENSG000002068442  RNY4P72  
ENSG000002008472  ENSG000002023062  ENSG000002023852  ENSG000001996762  RNY4P142  ENSG000002522172  ENSG000002010122  ENSG000002006512  
ENSG000002224302  ENSG000002067972  ENSG000002222962  ENSG000002387132  ENSG000001994102  ENSG000002522662  ENSG000002020012  ENSG000002125122  
ENSG000002006642  ENSG000002073842  ENSG000002008342  ENSG000002225062  ENSG000002067792  ENSG000002000412  ENSG000002020712  RNY1P52  
ENSG000002517992  ENSG000002011182  ENSG000002022242  ENSG000002071082  ENSG000002013512  ENSG000002390692  ENSG000002019902  RNY5P42  
ENSG000002072582  ENSG000002074042  ENSG000002518372  ENSG000002015112  ENSG000002073792  ENSG000002015652  ENSG000002011782  ENSG000002226492  
ENSG000002074812  ENSG000002024172  ENSG000002519952  ENSG000001992002  ENSG000002021782  ENSG000001997802  ENSG000002010262  ENSG000001995162  
ENSG000001996302  ENSG000002013392  ENSG000002015732  ENSG000002070612  ENSG000002066392  ENSG000002011212  ENSG000002017782  ENSG000002014252  
ENSG000002073682  ENSG000002526072  RNY4P292  ENSG000002006052  ENSG000002071842  RNY3P72  ENSG000002066792  ENSG000002071462  
ENSG000002530882  ENSG000002000522  ENSG000001992232  ENSG000001998622  RNY4P42  RNY4P242  ENSG000002223052  ENSG000002070802  
ENSG000002073022  ENSG000002020192  ENSG000002388132  ENSG000002021052  ENSG000002523192  ENSG000001999132  ENSG000001997322  ENSG000002527422  
ENSG000002068222  ENSG000001993782  ENSG000002012162  ENSG000002384132  ENSG000002022722  ENSG000002016492  ENSG000001992032  ENSG000002523172  
ENSG000002073562  ENSG000002067392  ENSG000002022542  ENSG000002011022  ENSG000002520212  ENSG000002518032  ENSG000002016242  RNY12  
ENSG000002066512  ENSG000002014662  ENSG000002000602  ENSG000001999332  ENSG000002520852  ENSG000002020082  ENSG000001993982  ENSG000002020792  
ENSG000002008572  ENSG000002522102  ENSG000002527362  ENSG000002072942  ENSG000002024692  ENSG000001993322  ENSG000002523742  ENSG000002389122  
ENSG000002526712  ENSG000002072132  ENSG000002071932  ENSG000002231882  ENSG000002383662  ENSG000002067062  ENSG000002005062  ENSG000002001422  
ENSG000002004282  ENSG000002004362  ENSG000002385342  ENSG000001999642  ENSG000002010472  ENSG000002125822  ENSG000002014512  ENSG000002006292  
ENSG000002073262  ENSG000002066602  ENSG000002011142  RNY1P12  ENSG000002525222  ENSG000002223512  ENSG000001996772  ENSG000002015292  
ENSG000002008422  ENSG000002004212  ENSG000002017882  ENSG000002071012  RNY4P262  RNY3P102  ENSG000002221682  ENSG000002066452  
ENSG000002013402  ENSG000002071552  ENSG000002023102  ENSG000001992452  ENSG000002518522  ENSG000002073902  ENSG000002066722  ENSG000002517922  
ENSG000002006062  RNY1P42  ENSG000002068132  ENSG000002021822  ENSG000002066592  ENSG000001999622  ENSG000002073832  ENSG000002006302  
ENSG000002065822  ENSG000002072402  ENSG000002011602  ENSG000001997812  ENSG000002225032  ENSG000002072182  ENSG000002001272  ENSG000001995302  
ENSG000001998672  ENSG000002007522  ENSG000002230232  ENSG000002016632  ENSG000002020212  ENSG000002074882  ENSG000002002702  ENSG000002391802  
ENSG000002008222  ENSG000002013092  ENSG000002020462  ENSG000002225112  ENSG000001998322  ENSG000001995152  ENSG000002025232  ENSG000002012172  
ENSG000001995652  ENSG000002021772  ENSG000002020782  RNY5P52  ENSG000002520692  ENSG000002224122  ENSG000002021442  ENSG000002233022  
ENSG000002069592  ENSG000002070492  ENSG000002069642  ENSG000002230602  ENSG000002521342  ENSG000002008292  ENSG000002517162  ENSG000002012082  
ENSG000002073422  ENSG000001995502  ENSG000002066622  ENSG000002072932  ENSG000002024952  ENSG000002067922  ENSG000002074012  ENSG000001998952  
ENSG000002073192  ENSG000002384262  ENSG000002014892  ENSG000002001622  ENSG000002067842  ENSG000002004852  ENSG000002018922  ENSG000002004192  
ENSG000002521802  ENSG000002073872  ENSG000002231872  ENSG000002010482  ENSG000001993032  ENSG000002013632  ENSG000002002912  ENSG000002521062  
ENSG000002530162  ENSG000002022972  ENSG000001994092  ENSG000002010312  ENSG000002074672  ENSG000002001212  ENSG000002018672  ENSG000002025082  
ENSG000002067052  ENSG000002014052  ENSG000002001712  ENSG000002232202  ENSG000002072812  ENSG000002066822  ENSG000002009822  ENSG000002023612  
ENSG000002002082  ENSG000002013142  ENSG000002070322  ENSG000002024872  ENSG000002520342  RNY4P52  ENSG000002068652  ENSG000002521712  
ENSG000002011382  ENSG000002526152  RNY3P62  ENSG000002005722  ENSG000001994712  ENSG000002024702  ENSG000002001382  ENSG000002009982  
ENSG000001999792  ENSG000002067412  ENSG000001992872  RNY1P32  ENSG000002018812  ENSG000002528742  ENSG000002015632  ENSG000002015662  
ENSG000002070202  RNY4P102  ENSG000002072862  ENSG000002224672  RNY4P272  ENSG000002074202  ENSG000002529152  ENSG000002011962  
ENSG000001994402  ENSG000002530962  ENSG000002019592  ENSG000002006882  RNY4P172  ENSG000002024022  ENSG000002003442  ENSG000002021002  
ENSG000002007882  ENSG000002067212  ENSG000001997152  ENSG000002072122  ENSG000002066732  ENSG000002002832  ENSG000002070172  ENSG000002072712  
ENSG000002015492  ENSG000002072472  ENSG000001999012  ENSG000001992912  RNY4P22  ENSG000002012182  ENSG000002123922  ENSG000002524502  
RNY3P92  ENSG000001997052  ENSG000002025362  RNY4P312  RNY3P12  ENSG000002071762  ENSG000002073202  ENSG000002001412  
ENSG000002124182  ENSG000002074972  ENSG000002008602  ENSG000002518452  ENSG000002002982  ENSG000002526552  RNY32  ENSG000002070692  
ENSG000002003902  ENSG000002016332  ENSG000001998812  ENSG000002529652  ENSG000002517862  ENSG000002074162  ENSG000002074662  ENSG000002071172  
ENSG000002066692  ENSG000001996352  ENSG000002071482  ENSG000002074262  ENSG000002002012  RNY4P92  ENSG000002069122  ENSG000002007142  
ENSG000002385852  ENSG000002000402  ENSG000002001702  ENSG000002018682  ENSG000002018622  ENSG000002008552  ENSG000002023092  ENSG000002073052  
ENSG000002025332  ENSG000001992202  ENSG000002005442  ENSG000002067952  ENSG000002003342  ENSG000001992632  ENSG000001994592  ENSG000001999362  
ENSG000002008742  ENSG000002068402  ENSG000001998752  ENSG000002021952  ENSG000002073712  ENSG000002067282  ENSG000001992012  ENSG000002071732  
ENSG000002006152  ENSG000002389432  ENSG000002005082  ENSG000002019332  ENSG000002008492  ENSG000002010882  ENSG000002068502  ENSG000002073862  
ENSG000002012822  ENSG000002003092  ENSG000002074382  ENSG000002024592  ENSG000002019132  ENSG000002122052  ENSG000002006852  ENSG000002073162  
ENSG000002016782  ENSG000002005472  ENSG000002068472  ENSG000002226132  ENSG000002233002  ENSG000002074032  ENSG000002002412  ENSG000002066362  
ENSG000002068062  ENSG000002067702  ENSG000002068582  ENSG000002004482  ENSG000002006352  ENSG000002023882  ENSG000002005912  ENSG000002067192  
ENSG000002007372  ENSG000002387232  ENSG000002022002  ENSG000002018432  ENSG000001996682  ENSG000002066462  ENSG000002074942  ENSG000002008372  
ENSG000002226012  ENSG000002073952  ENSG000002000112  ENSG000002070732  ENSG000002022512  ENSG000002021902  ENSG000002001352  ENSG000002388452  
ENSG000002070212  ENSG000002069272  ENSG000002073802  ENSG000002020352  ENSG000002121742  ENSG000002014422  ENSG000002069252  ENSG000002023452  
ENSG000002005212  RNY4P252  ENSG000002025222  ENSG000001995462  ENSG000002518112  ENSG000002013432  ENSG000002002562  RNY4P182  
ENSG000002071232  RNY5P32  ENSG000001993312  RNY4P302  RNY4P32  ENSG000002010752  ENSG000002007022  ENSG000002073292  
ENSG000002015482  RNY3P82  ENSG000002223062  ENSG000002014982  ENSG000002071422  ENSG000002016022  ENSG000002071962  ENSG000002001202  
ENSG000002125222  RNY1P22  ENSG000002225092  ENSG000002001792  ENSG000002520422  ENSG000002015092  ENSG000002072292  ENSG000002391432  
ENSG000002069052  ENSG000001994902  ENSG000002074252  ENSG000002519962  ENSG000002018202  ENSG000002019842  ENSG000001995672  ENSG000001998702  
ENSG000002012792  ENSG000002071892  RNY3P22  ENSG000002007502  ENSG000002004272  ENSG000002519862  ENSG000002007692  ENSG000002071952  
ENSG000002007422  ENSG000002021372  ENSG000002222032  ENSG000001994762  ENSG000002022792  ENSG000002526602  ENSG000002074172  ENSG000002018002  
ENSG000002232492  ENSG000002069672  ENSG000002021462  ENSG000002021402  RNY5P82  ENSG000002017242  ENSG000002013652  ENSG000002014262  
ENSG000002067382  ENSG000001992222  ENSG000002073172  ENSG000002073702  ENSG000002520982  ENSG000002071642  ENSG000002069822  ENSG000002066922  
ENSG000001997562  ENSG000002522542  ENSG000002072092  ENSG000002074392  ENSG000002527442  ENSG000002389332  ENSG000002005522  ENSG000002525342  
ENSG000002068142  ENSG000002070342  

RNY4 for paralogs           About GeneDecksing



Genomic Variants
for RNY4 gene

(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section

10/50 NCBI SNPs in RNY4 are shown (see all 50)     About this table
Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance		Chr 7 posSequence#AA
Chg		TypeMore#Allele
freq		PopTotal
sample		More
----------
rs779417401,2
--148658440(+) CAGTCT/CAATTT 1 -- us2k12Minor allele frequency- C:0.15CSA WA 120
rs1847991141,2
--148658569(+) TCCCAA/GCACTT 1 -- us2k10--------
rs1893542111,2
--148658588(+) CGAGGG/TGGGCA 1 -- us2k10--------
rs1926833361,2
--148658609(+) TCAGGA/CGATTG 1 -- us2k10--------
rs1477679011,2
--148658619(+) GAGACC/TATCCT 1 -- us2k10--------
rs1834828661,2
--148658625(+) ATCCTG/TGCTAA 1 -- us2k10--------
rs125344401,2
C,F,A,H,--148658645(+) AACCCA/GTCTCT 1 -- us2k16Minor allele frequency- G:0.17NA WA 12
rs1127575831,2
--148658676(+) CAGGCG/ATGGTG 1 -- us2k11Minor allele frequency- A:0.50CSA 2
rs1159186981,2
F,--148658875(+) CTCTCC/TGGAAG 1 -- us2k11Minor allele frequency- T:0.03WA 118
rs1509623571,2
--148659077(+) GGAGAA/GTGGAT 1 -- us2k10--------

HapMap Linkage Disequilibrium report for RNY4 (148660407 - 148660502 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
      Database of Genomic Variants (DGV) variations for RNY4: --

SABiosciences Cancer Mutation PCR Assays
Search QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing RNY4
DNA2.0 Custom Variant and Variant Library Synthesis for RNY4

Disorders / Diseases
for RNY4 gene

(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
About This Section
RNY4 for disorders           About MalaCards

RNY4 for disorders           About GeneDecksing

OMIM gene information: 601823    OMIM disorders: --


Export disorders for RNY4 gene to outside databases

Publications
for RNY4 gene

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
About This Section

PubMed articles for RNY4 gene, integrated from 9 sources (see all 22):
(articles sorted by number of sources associating them with RNY4)		    Utopia: connect your pdf to the dynamic
world of online information

  1. The human Y4 small cytoplasmic RNA gene is controlled by upstream elements and resides on chromosome 7 with all other hY scRNA genes. (PubMed id 7520568)1, 3 Maraia R.J....Darlington G.J. (1994)
  2. Ro-associated Y RNAs in metazoans: evolution and dive rsification. (PubMed id 17470436)1 Perreault J....Boire G. (2007)
  3. Gene encoding human Ro-associated autoantigen Y5 RNA. (PubMed id 8836182)1 Maraia R....Green E.D. (1996)
  4. Characterization of an unstable allele of the Arabidopsis HY4 locus. (PubMed id 9649544)9 Bruggemann E.P....Storz G. (1998)
  5. Two genetically separable phases of growth inhibition induced by blue light in Arabidopsis seedlings. (PubMed id 9765547)9 Parks B.M....Spalding E.P. (1998)
  6. Conditional synergism between cryptochrome 1 and phyt ochrome B is shown by the analysis of phyA, phyB, and hy4 simple, double, and t riple mutants in Arabidopsis. (PubMed id 9733522)9 Casal J.J. and Mazzella M.A. (1998)
  7. Comparative proteomic analysis of blue light signaling components in the Arabidopsis cryptochrome 1 mutant. (PubMed id 17464191)9 Phee B.K....Hahn T.R. (2007)
  8. Interaction of cryptochrome 1, phytochrome, and ion f luxes in blue-light-induced shrinking of Arabidopsis hypocotyl protoplasts. (PubMed id 9701582)9 Wang X. and Iino M. (1998)
  9. Mutations in the NPH1 locus of Arabidopsis disrupt the perception of phototropic stimuli. (PubMed id 7773019)9 Liscum E. and Briggs W.R. (1995)
  10. PP7 is a positive regulator of blue light signaling in Arabidopsis. (PubMed id 12724537)9 Moller S.G....Chua N.H. (2003)

External Searches for RNY4 gene

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section
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Genome Databases showing RNY4 gene

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
About This Section
Entrez Gene: 6086 HGNC: 10244 Ensembl:ENSG00000252316 euGenes: HUgn6086 ECgene: RNY4
H-InvDB: RNY4

Other Databases showing RNY4 gene

(According to HUGE)
About This Section
   --

Specialized Databases showing RNY4 gene

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
NameDescription
PharmGKB entry for RNY4 Pharmacogenomics, SNPs, Pathways

Intellectual Property
for RNY4 gene

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
About This Section
Patent Information for RNY4 gene:
Search GeneIP for patents involving RNY4

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



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