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Aliases for RNY4 Gene

Subcategory (RNA class) for RNY4 Gene

Y RNA

Quality Score for this RNA gene is

3

Aliases for RNY4 Gene

  • RNA, Ro-Associated Y4 2 3
  • RNA, Y4 Small Cytoplasmic (Associated With Ro Protein) 2 3
  • Y4 3 6
  • HY4 3

External Ids for RNY4 Gene

ORGUL Members for RNY4 Gene

Previous GeneCards Identifiers for RNY4 Gene

  • GC07U990084
  • GC07P148292
  • GC07P148663
  • GC07P142739

Summaries for RNY4 Gene

GeneCards Summary for RNY4 Gene

RNY4 (RNA, Ro-Associated Y4) is an RNA Gene, and is affiliated with the Y RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNY4 Gene

Genomics for RNY4 Gene

Regulatory Elements for RNY4 Gene

Genomic Location for RNY4 Gene

Start:
148,963,315 bp from pter
End:
148,963,410 bp from pter
Size:
96 bases
Orientation:
Plus strand

Genomic View for RNY4 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RNY4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNY4 Gene

Proteins for RNY4 Gene

Post-translational modifications for RNY4 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNY4 Gene

Domains for RNY4 Gene

Gene Families for RNY4 Gene

HGNC:
  • RNY :Y RNAs (Ro-associated)

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RNY4: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNY4 Gene

Function for RNY4 Gene

Molecular function for RNY4 Gene

GENATLAS Biochemistry: small cytoplasmic ribonucleoprotein RY4,component of Ro ribonucleoprotein

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for RNY4 Gene

Localization for RNY4 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNY4 Gene

Pathways for RNY4 Gene

SuperPathways for RNY4 Gene

No Data Available

Interacting Proteins for RNY4 Gene

Gene Ontology (GO) - Biological Process for RNY4 Gene

None

No data available for Pathways by source for RNY4 Gene

Compounds for RNY4 Gene

(2) Novoseek inferred chemical compound relationships for RNY4 Gene

Compound -log(P) Hits PubMed IDs
phytochrome 74.9 1
nppb 69.5 2
genes like me logo Genes that share compounds with RNY4: view

Transcripts for RNY4 Gene

mRNA/cDNA for RNY4 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNY4 Gene

No ASD Table

Relevant External Links for RNY4 Gene

GeneLoc Exon Structure for
RNY4
ECgene alternative splicing isoforms for
RNY4

Expression for RNY4 Gene

mRNA expression in normal human tissues for RNY4 Gene

genes like me logo Genes that share expressions with RNY4: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for RNY4 Gene

Orthologs for RNY4 Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNY4 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia Y_RNA 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia Y_RNA 36
  • 98 (a)
OneToOne
dog
(Canis familiaris)
Mammalia Y_RNA 36
  • 99 (a)
OneToOne
Species with no ortholog for RNY4:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNY4 Gene

ENSEMBL:
Gene Tree for RNY4 (if available)
TreeFam:
Gene Tree for RNY4 (if available)

Paralogs for RNY4 Gene

No data available for Paralogs for RNY4 Gene

Variants for RNY4 Gene

Sequence variations from dbSNP and Humsavar for RNY4 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type MAF
rs700324 -- 148,962,030(-) ttcac(C/T)gtgtt upstream-variant-2KB
rs822543 -- 148,963,881(-) GGAAG(C/T)GGAGG downstream-variant-500B
rs10236884 -- 148,962,524(+) AACTC(A/G)GTGAG upstream-variant-2KB
rs12532736 -- 148,962,062(+) CAAAA(A/C)TTAGA upstream-variant-2KB
rs12533548 -- 148,963,487(+) TACAT(A/G)AATGT downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for RNY4 Gene

Variant ID Type Subtype PubMed ID
nsv886305 CNV Gain 21882294

Relevant External Links for RNY4 Gene

HapMap Linkage Disequilibrium report
RNY4

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for RNY4 Gene

Disorders for RNY4 Gene

No disorders were found for RNY4 Gene.

No data available for UniProtKB/Swiss-Prot for RNY4 Gene

Publications for RNY4 Gene

  1. The human Y4 small cytoplasmic RNA gene is controlled by upstream elements and resides on chromosome 7 with all other hY scRNA genes. (PMID: 7520568) Maraia R.J. … Darlington G.J. (Nucleic Acids Res. 1994) 2 3
  2. Gene encoding human Ro-associated autoantigen Y5 RNA. (PMID: 8836182) Maraia R. … Green E.D. (Nucleic Acids Res. 1996) 3
  3. Ro-associated Y RNAs in metazoans: evolution and diversification. (PMID: 17470436) Perreault J. … Boire G. (Mol. Biol. Evol. 2007) 3
  4. Mutations in the NPH1 locus of Arabidopsis disrupt the perception of phototropic stimuli. (PMID: 7773019) Liscum E. … Briggs W.R. (Plant Cell 1995) 23
  5. Mutational analyses of light-controlled seedling development in Arabidopsis. (PMID: 7881072) Reed J.W. … Chory J. (Semin. Cell Biol. 1994) 23

Products for RNY4 Gene

Sources for RNY4 Gene

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