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Aliases for RNY3P1 Gene

Subcategory (RNA class) for RNY3P1 Gene

Y RNA

Aliases for RNY3P1 Gene

  • RNA, Ro-Associated Y3 Pseudogene 1 2 3 5

External Ids for RNY3P1 Gene

ORGUL Members for RNY3P1 Gene

Previous GeneCards Identifiers for RNY3P1 Gene

  • GC00U933670
  • GC05M078466

Summaries for RNY3P1 Gene

GeneCards Summary for RNY3P1 Gene

RNY3P1 (RNA, Ro-Associated Y3 Pseudogene 1) is a Pseudogene, and is affiliated with the Y RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNY3P1 Gene

Genomics for RNY3P1 Gene

Regulatory Elements for RNY3P1 Gene

Enhancers for RNY3P1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05F079173 0.4 ENCODE 0.8 -3.6 -3605 1.0 SOX13 PKNOX1 SAP130 ZNF384 ZSCAN9 RARA GATA3 CTBP1 FOS CREM GC05M079171 RNY3P1 ENSG00000249829
GH05F079181 0.8 Ensembl 0.4 -11.5 -11466 0.4 HLF IKZF1 CEBPA CEBPB EBF1 TBX21 ENSG00000249829 RNY3P1 GC05M079171
GH05F079146 0.4 ENCODE 0.3 +23.8 23843 0.2 ATF2 BHMT GC05M079171 RNY3P1
GH05F079133 0.8 Ensembl ENCODE 0.3 +36.4 36433 1.6 ARNT ZNF2 ZNF143 ZNF263 SP3 MXD4 REST ZNF518A SMARCA4 NBN BHMT RNY3P1 GC05M079171
GH05F079144 1 FANTOM5 ENCODE 0.3 +26.2 26173 0.2 ATF1 JUN BACH1 ZNF316 TRIM24 NFE2 FOS CREM MAFK NFE2L2 JMY GC05M079171 RNY3P1 BHMT
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RNY3P1 on UCSC Golden Path with GeneCards custom track

Genomic Location for RNY3P1 Gene

Chromosome:
5
Start:
79,170,234 bp from pter
End:
79,170,335 bp from pter
Size:
102 bases
Orientation:
Minus strand

Genomic View for RNY3P1 Gene

Genes around RNY3P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNY3P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNY3P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNY3P1 Gene

Proteins for RNY3P1 Gene

Post-translational modifications for RNY3P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNY3P1 Gene

Domains & Families for RNY3P1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNY3P1 Gene

Function for RNY3P1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNY3P1 Gene

Localization for RNY3P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNY3P1 Gene

Pathways & Interactions for RNY3P1 Gene

SuperPathways for RNY3P1 Gene

No Data Available

Interacting Proteins for RNY3P1 Gene

Gene Ontology (GO) - Biological Process for RNY3P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNY3P1 Gene

Transcripts for RNY3P1 Gene

mRNA/cDNA for RNY3P1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNY3P1 Gene

No ASD Table

Relevant External Links for RNY3P1 Gene

GeneLoc Exon Structure for
RNY3P1
ECgene alternative splicing isoforms for
RNY3P1

Expression for RNY3P1 Gene

mRNA expression in normal human tissues for RNY3P1 Gene

NURSA nuclear receptor signaling pathways regulating expression of RNY3P1 Gene:

RNY3P1
genes like me logo Genes that share expression patterns with RNY3P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RNY3P1 Gene

Orthologs for RNY3P1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNY3P1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia Y_RNA 35
  • 100 (a)
OneToOne
dog
(Canis familiaris)
Mammalia Y_RNA 35
  • 83 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia Y_RNA 35
  • 83 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia Y_RNA 35
  • 75 (a)
ManyToMany
chicken
(Gallus gallus)
Aves Y_RNA 35
  • 81 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia Y_RNA 35
  • 86 (a)
OneToMany
Species where no ortholog for RNY3P1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNY3P1 Gene

ENSEMBL:
Gene Tree for RNY3P1 (if available)
TreeFam:
Gene Tree for RNY3P1 (if available)

Paralogs for RNY3P1 Gene

No data available for Paralogs for RNY3P1 Gene

Variants for RNY3P1 Gene

Relevant External Links for RNY3P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNY3P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNY3P1 Gene

Disorders for RNY3P1 Gene

No disorders were found for RNY3P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNY3P1 Gene

Publications for RNY3P1 Gene

No publications were found for RNY3P1 Gene.

Products for RNY3P1 Gene

Sources for RNY3P1 Gene

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