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Aliases for RNY3 Gene

Subcategory (RNA class) for RNY3 Gene

Y RNA

Quality Score for this RNA gene is

3

Aliases for RNY3 Gene

  • RNA, Ro-Associated Y3 2 3 5
  • RNA, Y3 Small Cytoplasmic (Associated With Ro Protein) 2 3
  • HY3 3
  • Y3 3

External Ids for RNY3 Gene

ORGUL Members for RNY3 Gene

Previous GeneCards Identifiers for RNY3 Gene

  • GC07U990083
  • GC07P148312
  • GC07P148680
  • GC07P142759
  • GC07P148987
  • GC07P148994
  • GC07P148995
  • GC07P148997

Summaries for RNY3 Gene

GeneCards Summary for RNY3 Gene

RNY3 (RNA, Ro-Associated Y3) is an RNA Gene, and is affiliated with the Y RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNY3 Gene

Genomics for RNY3 Gene

Regulatory Elements for RNY3 Gene

Enhancers for RNY3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07F148985 0.2 ENCODE 0.8 +1.9 1909 0.2 BCOR TBP CBX3 ZNF384 UBTF GTF3C2 ADNP TRIM24 ZBTB10 SMARCA5 ZNF212 ZNF282 ZNF398 ENSG00000271664 PDIA4 ZNF783 GC07M148988 RNY1 RNY3
GH07F148986 1.1 ENCODE 0.8 +3.4 3385 2.6 PKNOX1 ARNT ARID4B ZNF2 ZNF143 FOS SP3 NFYC REST TBX21 ZNF282 PDIA4 ZNF398 ZNF212 ZNF777 ENSG00000271664 ZNF786 ZNF783 GC07M148988 RNY1
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RNY3 on UCSC Golden Path with GeneCards custom track

Promoters for RNY3 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001897409 -254 2200 ATF1 PKNOX1 ARNT ARID4B FEZF1 ZNF2 GLIS2 ZNF143 FOS KLF13

Genomic Location for RNY3 Gene

Chromosome:
7
Start:
148,983,755 bp from pter
End:
148,983,856 bp from pter
Size:
102 bases
Orientation:
Plus strand

Genomic View for RNY3 Gene

Genes around RNY3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNY3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNY3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNY3 Gene

Proteins for RNY3 Gene

Post-translational modifications for RNY3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNY3 Gene

Domains & Families for RNY3 Gene

Gene Families for RNY3 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RNY3: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNY3 Gene

Function for RNY3 Gene

Molecular function for RNY3 Gene

GENATLAS Biochemistry:
small cytoplasmic ribonucleoprotein RY3,component of Ro ribonucleoprotein

Animal Model Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNY3 Gene

Localization for RNY3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNY3 Gene

Pathways & Interactions for RNY3 Gene

SuperPathways for RNY3 Gene

No Data Available

Interacting Proteins for RNY3 Gene

Gene Ontology (GO) - Biological Process for RNY3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNY3 Gene

Transcripts for RNY3 Gene

mRNA/cDNA for RNY3 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNY3 Gene

No ASD Table

Relevant External Links for RNY3 Gene

GeneLoc Exon Structure for
RNY3
ECgene alternative splicing isoforms for
RNY3

Expression for RNY3 Gene

mRNA expression in normal human tissues for RNY3 Gene

NURSA nuclear receptor signaling pathways regulating expression of RNY3 Gene:

RNY3
genes like me logo Genes that share expression patterns with RNY3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RNY3 Gene

Orthologs for RNY3 Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNY3 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia Y_RNA 35
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia Y_RNA 35
  • 98 (a)
OneToOne
dog
(Canis familiaris)
Mammalia Y_RNA 35
  • 95 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Rny3 35
  • 95 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia Y_RNA 35
  • 93 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia Y_RNA 35
  • 87 (a)
OneToMany
chicken
(Gallus gallus)
Aves Y_RNA 35
  • 85 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia Y_RNA 35
  • 90 (a)
OneToMany
Species where no ortholog for RNY3 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNY3 Gene

ENSEMBL:
Gene Tree for RNY3 (if available)
TreeFam:
Gene Tree for RNY3 (if available)

Paralogs for RNY3 Gene

No data available for Paralogs for RNY3 Gene

Variants for RNY3 Gene

Sequence variations from dbSNP and Humsavar for RNY3 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs112554303 -- 148,983,331(+) CTGAT(A/C)CCGGG upstream-variant-2KB
rs113040728 -- 148,983,732(+) TATAA(A/G)TAGCA upstream-variant-2KB
rs114180810 -- 148,983,200(+) GGGAC(A/G)CCGGG upstream-variant-2KB
rs114375200 -- 148,982,006(+) CGGTC(C/T)GGCCA upstream-variant-2KB
rs115504179 -- 148,982,482(+) AACTT(C/T)AAAAT upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for RNY3 Gene

Variant ID Type Subtype PubMed ID
nsv528358 CNV loss 19592680
nsv608973 CNV loss 21841781
nsv831183 CNV loss 17160897

Relevant External Links for RNY3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNY3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RNY3 Gene

Disorders for RNY3 Gene

No disorders were found for RNY3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNY3 Gene

Publications for RNY3 Gene

  1. Genes for two small cytoplasmic Ro RNAs are adjacent and appear to be single-copy in the human genome. (PMID: 6187471) Wolin S.L. … Steitz J.A. (Cell 1983) 2 3 64
  2. The Y3** ncRNA promotes the 3' end processing of histone mRNAs. (PMID: 26443846) KAPhn M. … HA1ttelmaier S. (Genes Dev. 2015) 3 64
  3. Ro-associated Y RNAs in metazoans: evolution and diversification. (PMID: 17470436) Perreault J. … Boire G. (Mol. Biol. Evol. 2007) 3 64
  4. Calreticulin binds hYRNA and the 52-kDa polypeptide component of the Ro/SS-A ribonucleoprotein autoantigen. (PMID: 8666824) Cheng S.T. … Sontheimer R.D. (J. Immunol. 1996) 3 64
  5. Gene encoding human Ro-associated autoantigen Y5 RNA. (PMID: 8836182) Maraia R. … Green E.D. (Nucleic Acids Res. 1996) 3 64

Products for RNY3 Gene

Sources for RNY3 Gene

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