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Aliases for RNY3 Gene

Subcategory (RNA class) for RNY3 Gene

Y RNA

Quality Score for this RNA gene is

3

Aliases for RNY3 Gene

  • RNA, Ro-Associated Y3 2 3
  • RNA, Y3 Small Cytoplasmic (Associated With Ro Protein) 2 3
  • Y3 3 6
  • HY3 3

External Ids for RNY3 Gene

ORGUL Members for RNY3 Gene

Previous GeneCards Identifiers for RNY3 Gene

  • GC07U990083
  • GC07P148312
  • GC07P148680
  • GC07P142759

Summaries for RNY3 Gene

GeneCards Summary for RNY3 Gene

RNY3 (RNA, Ro-Associated Y3) is an RNA Gene, and is affiliated with the Y RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNY3 Gene

Genomics for RNY3 Gene

Genomic Location for RNY3 Gene

Start:
148,983,755 bp from pter
End:
148,983,856 bp from pter
Size:
102 bases
Orientation:
Plus strand

Genomic View for RNY3 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RNY3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNY3 Gene

No data available for Regulatory Elements for RNY3 Gene

Proteins for RNY3 Gene

Post-translational modifications for RNY3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNY3 Gene

Domains for RNY3 Gene

Gene Families for RNY3 Gene

HGNC:
  • RNY :Y RNAs (Ro-associated)

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RNY3: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNY3 Gene

Function for RNY3 Gene

Molecular function for RNY3 Gene

GENATLAS Biochemistry: small cytoplasmic ribonucleoprotein RY3,component of Ro ribonucleoprotein

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for RNY3 Gene

Localization for RNY3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNY3 Gene

Pathways for RNY3 Gene

SuperPathways for RNY3 Gene

No Data Available

Interacting Proteins for RNY3 Gene

Gene Ontology (GO) - Biological Process for RNY3 Gene

None

No data available for Pathways by source for RNY3 Gene

Transcripts for RNY3 Gene

mRNA/cDNA for RNY3 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNY3 Gene

No ASD Table

Relevant External Links for RNY3 Gene

GeneLoc Exon Structure for
RNY3
ECgene alternative splicing isoforms for
RNY3

Expression for RNY3 Gene

mRNA expression in normal human tissues for RNY3 Gene

genes like me logo Genes that share expressions with RNY3: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for RNY3 Gene

Orthologs for RNY3 Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNY3 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia Y_RNA 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia Y_RNA 36
  • 98 (a)
OneToOne
dog
(Canis familiaris)
Mammalia Y_RNA 36
  • 95 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Rny3 16
Rny3 36
  • 95 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia Y_RNA 36
  • 87 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia Y_RNA 36
  • 93 (a)
OneToOne
chicken
(Gallus gallus)
Aves Y_RNA 36
  • 85 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia Y_RNA 36
  • 90 (a)
OneToMany
Species with no ortholog for RNY3:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNY3 Gene

ENSEMBL:
Gene Tree for RNY3 (if available)
TreeFam:
Gene Tree for RNY3 (if available)

Paralogs for RNY3 Gene

No data available for Paralogs for RNY3 Gene

Variants for RNY3 Gene

Sequence variations from dbSNP and Humsavar for RNY3 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type MAF
rs2616858 -- 148,983,631(-) AAGCA(A/T)ATGTT upstream-variant-2KB
rs2709330 -- 148,983,319(+) CCGCG(A/G)GGACC upstream-variant-2KB
rs2709331 -- 148,983,897(+) CCCAA(C/T)ACAGA downstream-variant-500B
rs6947627 -- 148,981,798(+) aactt(C/G)cacct upstream-variant-2KB
rs7784440 -- 148,982,193(+) gtggc(A/G)ggtgc upstream-variant-2KB

Relevant External Links for RNY3 Gene

HapMap Linkage Disequilibrium report
RNY3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for RNY3 Gene

Disorders for RNY3 Gene

No disorders were found for RNY3 Gene.

No data available for UniProtKB/Swiss-Prot for RNY3 Gene

Publications for RNY3 Gene

  1. Genes for two small cytoplasmic Ro RNAs are adjacent and appear to be single-copy in the human genome. (PMID: 6187471) Wolin S.L. … Steitz J.A. (Cell 1983) 2 3
  2. Gene encoding human Ro-associated autoantigen Y5 RNA. (PMID: 8836182) Maraia R. … Green E.D. (Nucleic Acids Res. 1996) 3
  3. Ro-associated Y RNAs in metazoans: evolution and diversification. (PMID: 17470436) Perreault J. … Boire G. (Mol. Biol. Evol. 2007) 3

Products for RNY3 Gene

Sources for RNY3 Gene

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