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Aliases for RNY1P5 Gene

Subcategory (RNA class) for RNY1P5 Gene

Y RNA

Aliases for RNY1P5 Gene

  • RNA, Ro-Associated Y1 Pseudogene 5 2 3 5

External Ids for RNY1P5 Gene

ORGUL Members for RNY1P5 Gene

Previous GeneCards Identifiers for RNY1P5 Gene

  • GC00U933878
  • GC13M074864

Summaries for RNY1P5 Gene

GeneCards Summary for RNY1P5 Gene

RNY1P5 (RNA, Ro-Associated Y1 Pseudogene 5) is a Pseudogene, and is affiliated with the Y RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNY1P5 Gene

Genomics for RNY1P5 Gene

Regulatory Elements for RNY1P5 Gene

Enhancers for RNY1P5 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH13F074286 1.4 FANTOM5 ENCODE 0.8 +0.2 220 4.5 PKNOX1 ARID4B FEZF1 DMAP1 ZNF48 YY1 SP5 PPARG KAT8 MIER3 KLF12 GC13M074290 RNY1P5 GC13M074272
GH13F074301 0.8 Ensembl ENCODE 0.4 -12.5 -12548 0.6 PKNOX1 SP2 ZFP37 FEZF1 ZEB2 MNT ZNF843 ATF2 CTBP1 PATZ1 GC13M074290 RNY1P5 GC13M074333
GH13F074274 0.2 ENCODE 0.4 +14.0 13983 0.6 LINC00402 GC13M074272 GC13M074290 RNY1P5
GH13F074275 0.2 ENCODE 0.4 +14.9 14904 0.3 TRIM28 GC13M074272 GC13M074290 RNY1P5
GH13F074300 0.4 Ensembl 0.4 -11.7 -11687 0.2 GC13M074290 RNY1P5 GC13M074333
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RNY1P5 on UCSC Golden Path with GeneCards custom track

Promoters for RNY1P5 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001785677 1014 401 ELF3 DRAP1 ZNF792 MLX BMI1 DMAP1 ZSCAN9 RAD21 TEAD3 YY1

Genomic Location for RNY1P5 Gene

Chromosome:
13
Start:
74,289,100 bp from pter
End:
74,289,214 bp from pter
Size:
115 bases
Orientation:
Minus strand

Genomic View for RNY1P5 Gene

Genes around RNY1P5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNY1P5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNY1P5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNY1P5 Gene

Proteins for RNY1P5 Gene

Post-translational modifications for RNY1P5 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNY1P5 Gene

Domains & Families for RNY1P5 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNY1P5 Gene

Function for RNY1P5 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNY1P5 Gene

Localization for RNY1P5 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNY1P5 Gene

Pathways & Interactions for RNY1P5 Gene

SuperPathways for RNY1P5 Gene

No Data Available

Interacting Proteins for RNY1P5 Gene

Gene Ontology (GO) - Biological Process for RNY1P5 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNY1P5 Gene

Transcripts for RNY1P5 Gene

mRNA/cDNA for RNY1P5 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNY1P5 Gene

No ASD Table

Relevant External Links for RNY1P5 Gene

GeneLoc Exon Structure for
RNY1P5
ECgene alternative splicing isoforms for
RNY1P5

Expression for RNY1P5 Gene

mRNA expression in normal human tissues for RNY1P5 Gene

NURSA nuclear receptor signaling pathways regulating expression of RNY1P5 Gene:

RNY1P5
genes like me logo Genes that share expression patterns with RNY1P5: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RNY1P5 Gene

Orthologs for RNY1P5 Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNY1P5 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia Y_RNA 35
  • 100 (a)
OneToOne
chicken
(Gallus gallus)
Aves Y_RNA 35
  • 85 (a)
OneToMany
Species where no ortholog for RNY1P5 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNY1P5 Gene

ENSEMBL:
Gene Tree for RNY1P5 (if available)
TreeFam:
Gene Tree for RNY1P5 (if available)

Paralogs for RNY1P5 Gene

No data available for Paralogs for RNY1P5 Gene

Variants for RNY1P5 Gene

Relevant External Links for RNY1P5 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNY1P5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNY1P5 Gene

Disorders for RNY1P5 Gene

No disorders were found for RNY1P5 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNY1P5 Gene

Publications for RNY1P5 Gene

No publications were found for RNY1P5 Gene.

Products for RNY1P5 Gene

Sources for RNY1P5 Gene

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