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Aliases for RNVU1-7 Gene

Subcategory (RNA class) for RNVU1-7 Gene

snRNA

Quality Score for this RNA gene is

3

Aliases for RNVU1-7 Gene

  • RNA, Variant U1 Small Nuclear 7 2 3 5
  • RNA, U1 Small Nuclear 26, Pseudogene 2 3
  • RNA, U1 Small Nuclear 6, Pseudogene 2 3
  • RNA, U1 Small Nuclear 9, Pseudogene 2 3
  • RNA, Variant U1 Small Nuclear 9 2 3
  • RNA, U1 Small Nuclear 9 2
  • RNU1-26P 3
  • RNU1-6P 3
  • RNU1-9P 3
  • RNVU1-9 3
  • RNU1-6 3
  • RNU1-9 3
  • VU1.7 3
  • VU1.9 3

External Ids for RNVU1-7 Gene

ORGUL Members for RNVU1-7 Gene

Previous HGNC Symbols for RNVU1-7 Gene

  • RNU1-9
  • RNU1-9P
  • RNVU1-9
  • RNU1-6P
  • RNU1-26P

Previous GeneCards Identifiers for RNVU1-7 Gene

  • GC01M145972

Summaries for RNVU1-7 Gene

GeneCards Summary for RNVU1-7 Gene

RNVU1-7 (RNA, Variant U1 Small Nuclear 7) is an RNA Gene, and is affiliated with the snRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNVU1-7 Gene

Genomics for RNVU1-7 Gene

Regulatory Elements for RNVU1-7 Gene

Enhancers for RNVU1-7 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01G148032 0.8 Ensembl 0.4 +5.8 5791 1.2 CTCF SIX4 RBBP5 ZIC2 RAD21 ZFHX2 ZBTB48 POLR2A ELK1 SCRT2 TRQ-CTG3-2 RNVU1-7
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RNVU1-7 on UCSC Golden Path with GeneCards custom track

Promoters for RNVU1-7 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000013147 16 1401 HNF4A

Genomic Location for RNVU1-7 Gene

Chromosome:
1
Start:
148,038,753 bp from pter
End:
148,038,916 bp from pter
Size:
164 bases
Orientation:
Minus strand

Genomic View for RNVU1-7 Gene

Genes around RNVU1-7 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNVU1-7 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNVU1-7 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNVU1-7 Gene

Proteins for RNVU1-7 Gene

Post-translational modifications for RNVU1-7 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNVU1-7 Gene

Domains & Families for RNVU1-7 Gene

Gene Families for RNVU1-7 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RNVU1-7: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNVU1-7 Gene

Function for RNVU1-7 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNVU1-7 Gene

Localization for RNVU1-7 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNVU1-7 Gene

Pathways & Interactions for RNVU1-7 Gene

SuperPathways for RNVU1-7 Gene

No Data Available

Interacting Proteins for RNVU1-7 Gene

Gene Ontology (GO) - Biological Process for RNVU1-7 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNVU1-7 Gene

Drugs & Compounds for RNVU1-7 Gene

No Compound Related Data Available

Transcripts for RNVU1-7 Gene

mRNA/cDNA for RNVU1-7 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNVU1-7 Gene

No ASD Table

Relevant External Links for RNVU1-7 Gene

GeneLoc Exon Structure for
RNVU1-7
ECgene alternative splicing isoforms for
RNVU1-7

Expression for RNVU1-7 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNVU1-7 Gene

genes like me logo Genes that share expression patterns with RNVU1-7: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNVU1-7 Gene

Orthologs for RNVU1-7 Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNVU1-7 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U1 35 35
  • 100 (a)
ManyToMany
cow
(Bos Taurus)
Mammalia U1 35
  • 99 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia U1 35
  • 99 (a)
ManyToMany
Species where no ortholog for RNVU1-7 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNVU1-7 Gene

ENSEMBL:
Gene Tree for RNVU1-7 (if available)
TreeFam:
Gene Tree for RNVU1-7 (if available)

Paralogs for RNVU1-7 Gene

No data available for Paralogs for RNVU1-7 Gene

Variants for RNVU1-7 Gene

Sequence variations from dbSNP and Humsavar for RNVU1-7 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1284359 -- 148,040,568(+) agttc(C/G)tgggt upstream-variant-2KB
rs1300113 -- 148,038,610(+) GCTCA(C/G)GGCGG downstream-variant-500B
rs2749225 -- 148,038,561(+) CAAGT(A/G)GAAAG downstream-variant-500B
rs2749226 -- 148,038,767(+) GCGCG(A/G)ACGCA nc-transcript-variant
rs2749227 -- 148,038,868(+) CGCCC(A/T)GGGAA nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for RNVU1-7 Gene

Variant ID Type Subtype PubMed ID
dgv327n100 CNV gain 25217958
dgv66e199 CNV deletion 23128226
esv2761299 CNV gain+loss 21179565
nsv1000564 CNV gain 25217958
nsv1003688 CNV gain 25217958
nsv1005055 CNV loss 25217958
nsv1132304 CNV duplication 24896259
nsv509457 CNV insertion 20534489
nsv510962 OTHER complex 20534489
nsv511130 CNV loss 21212237
nsv946313 CNV duplication 23825009

Relevant External Links for RNVU1-7 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNVU1-7

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RNVU1-7 Gene

Disorders for RNVU1-7 Gene

No disorders were found for RNVU1-7 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNVU1-7 Gene

Publications for RNVU1-7 Gene

  1. Differentially expressed, variant U1 snRNAs regulate gene expression in human cells. (PMID: 23070852) O'Reilly D. … Murphy S. (Genome Res. 2013) 2 3 64
  2. Human U1 loci: genes for human U1 RNA have dramatically similar genomic environments. (PMID: 6179629) Manser T. … Gesteland R.F. (Cell 1982) 3 64

Products for RNVU1-7 Gene

Sources for RNVU1-7 Gene

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