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Aliases for RNVU1-4 Gene

Subcategory (RNA class) for RNVU1-4 Gene

snRNA

Quality Score for this RNA gene is

3

Aliases for RNVU1-4 Gene

  • RNA, Variant U1 Small Nuclear 4 2 3 5
  • RNA, Variant U1 Small Nuclear 5 2 3
  • RNU1-102 3
  • RNU1-50 3
  • RNVU1-5 3
  • VU1.4 3
  • VU1.5 3

External Ids for RNVU1-4 Gene

ORGUL Members for RNVU1-4 Gene

Previous HGNC Symbols for RNVU1-4 Gene

  • RNVU1-5

Previous GeneCards Identifiers for RNVU1-4 Gene

  • GC01M144313

Summaries for RNVU1-4 Gene

GeneCards Summary for RNVU1-4 Gene

RNVU1-4 (RNA, Variant U1 Small Nuclear 4) is an RNA Gene, and is affiliated with the snRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNVU1-4 Gene

Genomics for RNVU1-4 Gene

Regulatory Elements for RNVU1-4 Gene


Promoters for RNVU1-4 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000012537 -200 1601 PKNOX1 ZFHX2 EGR2

Genomic Location for RNVU1-4 Gene

Chromosome:
1
Start:
120,942,600 bp from pter
End:
120,942,763 bp from pter
Size:
164 bases
Orientation:
Plus strand

Genomic View for RNVU1-4 Gene

Genes around RNVU1-4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNVU1-4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNVU1-4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNVU1-4 Gene

Proteins for RNVU1-4 Gene

Post-translational modifications for RNVU1-4 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNVU1-4 Gene

Domains & Families for RNVU1-4 Gene

Gene Families for RNVU1-4 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RNVU1-4: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNVU1-4 Gene

Function for RNVU1-4 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNVU1-4 Gene

Localization for RNVU1-4 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNVU1-4 Gene

Pathways & Interactions for RNVU1-4 Gene

SuperPathways for RNVU1-4 Gene

No Data Available

Interacting Proteins for RNVU1-4 Gene

Gene Ontology (GO) - Biological Process for RNVU1-4 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNVU1-4 Gene

Drugs & Compounds for RNVU1-4 Gene

No Compound Related Data Available

Transcripts for RNVU1-4 Gene

mRNA/cDNA for RNVU1-4 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNVU1-4 Gene

No ASD Table

Relevant External Links for RNVU1-4 Gene

GeneLoc Exon Structure for
RNVU1-4
ECgene alternative splicing isoforms for
RNVU1-4

Expression for RNVU1-4 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNVU1-4 Gene

genes like me logo Genes that share expression patterns with RNVU1-4: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNVU1-4 Gene

Orthologs for RNVU1-4 Gene

Evolution for RNVU1-4 Gene

ENSEMBL:
Gene Tree for RNVU1-4 (if available)
TreeFam:
Gene Tree for RNVU1-4 (if available)

No data available for Orthologs for RNVU1-4 Gene

Paralogs for RNVU1-4 Gene

No data available for Paralogs for RNVU1-4 Gene

Variants for RNVU1-4 Gene

Sequence variations from dbSNP and Humsavar for RNVU1-4 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs10595479 -- 120,941,531(+) GTGAC(-/TG)TGTCT intron-variant, upstream-variant-2KB
rs113142252 -- 120,942,803(+) TGTGG(A/T)AGCAT intron-variant, downstream-variant-500B
rs113597075 -- 120,940,682(+) CATAT(A/G)TTATA intron-variant, upstream-variant-2KB
rs11579400 -- 120,942,173(+) GGGAC(C/T)TCCAC intron-variant, upstream-variant-2KB
rs12072251 -- 120,942,078(+) GAATC(A/G)GTTTC intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for RNVU1-4 Gene

Variant ID Type Subtype PubMed ID
nsv1126206 CNV deletion 24896259
nsv524681 CNV gain 19592680

Relevant External Links for RNVU1-4 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNVU1-4

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RNVU1-4 Gene

Disorders for RNVU1-4 Gene

No disorders were found for RNVU1-4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNVU1-4 Gene

Publications for RNVU1-4 Gene

  1. Differentially expressed, variant U1 snRNAs regulate gene expression in human cells. (PMID: 23070852) O'Reilly D. … Murphy S. (Genome Res. 2013) 2 3 64

Products for RNVU1-4 Gene

Sources for RNVU1-4 Gene

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