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Aliases for RNVU1-18 Gene

Subcategory (RNA class) for RNVU1-18 Gene

snRNA

Quality Score for this RNA gene is

3

Aliases for RNVU1-18 Gene

  • RNA, Variant U1 Small Nuclear 18 2 3
  • RNA, U1 Small Nuclear 25, Pseudogene 2 3
  • RNA, U1 Small Nuclear Pseudogene 1 2 3
  • RNA, U1 Small Nuclear 5 2 3
  • RNA, U1 Small Nuclear Pseudogene 9 3
  • RNA, U1 Small Nuclear 25 2
  • RNU1-25P 3
  • RNU1-25 3
  • RNU1P1 3
  • RNU1P9 3
  • U1P101 3
  • VU1.18 3
  • RNU1-5 3
  • U1.15 3
  • U1P15 3

External Ids for RNVU1-18 Gene

ORGUL Members for RNVU1-18 Gene

Previous HGNC Symbols for RNVU1-18 Gene

  • RNU1P1
  • RNU1-5
  • RNU1-25
  • RNU1-25P

Previous GeneCards Identifiers for RNVU1-18 Gene

  • GC01M149227

Summaries for RNVU1-18 Gene

GeneCards Summary for RNVU1-18 Gene

RNVU1-18 (RNA, Variant U1 Small Nuclear 18) is an RNA Gene, and is affiliated with the snRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNVU1-18 Gene

Genomics for RNVU1-18 Gene

Genomic Location for RNVU1-18 Gene

Start:
143,729,407 bp from pter
End:
143,729,570 bp from pter
Size:
164 bases
Orientation:
Minus strand

Genomic View for RNVU1-18 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RNVU1-18 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNVU1-18 Gene

No data available for Regulatory Elements for RNVU1-18 Gene

Proteins for RNVU1-18 Gene

Post-translational modifications for RNVU1-18 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNVU1-18 Gene

Domains for RNVU1-18 Gene

Gene Families for RNVU1-18 Gene

HGNC:
  • snRNA :ncRNAs / Small nuclear RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RNVU1-18: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNVU1-18 Gene

Function for RNVU1-18 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for RNVU1-18 Gene

Localization for RNVU1-18 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNVU1-18 Gene

Pathways for RNVU1-18 Gene

SuperPathways for RNVU1-18 Gene

No Data Available

Interacting Proteins for RNVU1-18 Gene

Gene Ontology (GO) - Biological Process for RNVU1-18 Gene

None

No data available for Pathways by source for RNVU1-18 Gene

Transcripts for RNVU1-18 Gene

mRNA/cDNA for RNVU1-18 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for RNVU1-18

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNVU1-18 Gene

No ASD Table

Relevant External Links for RNVU1-18 Gene

GeneLoc Exon Structure for
RNVU1-18
ECgene alternative splicing isoforms for
RNVU1-18

Expression for RNVU1-18 Gene

mRNA expression in normal human tissues for RNVU1-18 Gene

genes like me logo Genes that share expressions with RNVU1-18: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for RNVU1-18 Gene

Orthologs for RNVU1-18 Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNVU1-18 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U1 36
  • 100 (a)
ManyToMany
cow
(Bos Taurus)
Mammalia U1 36
  • 100 (a)
ManyToMany
Species with no ortholog for RNVU1-18:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNVU1-18 Gene

ENSEMBL:
Gene Tree for RNVU1-18 (if available)
TreeFam:
Gene Tree for RNVU1-18 (if available)

Paralogs for RNVU1-18 Gene

No data available for Paralogs for RNVU1-18 Gene

Variants for RNVU1-18 Gene

Relevant External Links for RNVU1-18 Gene

HapMap Linkage Disequilibrium report
RNVU1-18

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar and Structural Variations from Database of Genomic Variants (DGV) for RNVU1-18 Gene

Disorders for RNVU1-18 Gene

No disorders were found for RNVU1-18 Gene.

No data available for UniProtKB/Swiss-Prot for RNVU1-18 Gene

Publications for RNVU1-18 Gene

  1. Differentially expressed, variant U1 snRNAs regulate gene expression in human cells. (PMID: 23070852) O'Reilly D. … Murphy S. (Genome Res. 2013) 2 3
  2. Human U1 small nuclear RNA genes: extensive conservation of flanking sequences suggests cycles of gene amplification and transposition. (PMID: 3837185) Bernstein L.B. … Weiner A.M. (Mol. Cell. Biol. 1985) 3
  3. Human U1 RNA pseudogenes may be generated by both DNA- and RNA-mediated mechanisms. (PMID: 6085956) Denison R.A. … Weiner A.M. (Mol. Cell. Biol. 1982) 3
  4. Human U1 loci: genes for human U1 RNA have dramatically similar genomic environments. (PMID: 6179629) Manser T. … Gesteland R.F. (Cell 1982) 3

Products for RNVU1-18 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate RNVU1-18
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for RNVU1-18
    • Block miRNA regulation of RNVU1-18 using miScript Target Protectors

    Sources for RNVU1-18 Gene

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