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Aliases for RNVU1-17 Gene

Subcategory (RNA class) for RNVU1-17 Gene

snRNA

Quality Score for this RNA gene is

3

Aliases for RNVU1-17 Gene

  • RNA, Variant U1 Small Nuclear 17 2 3
  • RNU1-127 3
  • VU1.17 3

External Ids for RNVU1-17 Gene

ORGUL Members for RNVU1-17 Gene

Previous GeneCards Identifiers for RNVU1-17 Gene

  • GC01M149198

Summaries for RNVU1-17 Gene

GeneCards Summary for RNVU1-17 Gene

RNVU1-17 (RNA, Variant U1 Small Nuclear 17) is an RNA Gene, and is affiliated with the snRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNVU1-17 Gene

Genomics for RNVU1-17 Gene

Genomic Location for RNVU1-17 Gene

Start:
143,699,456 bp from pter
End:
143,699,619 bp from pter
Size:
164 bases
Orientation:
Minus strand

Genomic View for RNVU1-17 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RNVU1-17 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNVU1-17 Gene

No data available for Regulatory Elements for RNVU1-17 Gene

Proteins for RNVU1-17 Gene

Post-translational modifications for RNVU1-17 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNVU1-17 Gene

Domains for RNVU1-17 Gene

Gene Families for RNVU1-17 Gene

HGNC:
  • snRNA :ncRNAs / Small nuclear RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RNVU1-17: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNVU1-17 Gene

Function for RNVU1-17 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for RNVU1-17 Gene

Localization for RNVU1-17 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNVU1-17 Gene

Pathways for RNVU1-17 Gene

SuperPathways for RNVU1-17 Gene

No Data Available

Interacting Proteins for RNVU1-17 Gene

Gene Ontology (GO) - Biological Process for RNVU1-17 Gene

None

No data available for Pathways by source for RNVU1-17 Gene

Transcripts for RNVU1-17 Gene

mRNA/cDNA for RNVU1-17 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNVU1-17 Gene

No ASD Table

Relevant External Links for RNVU1-17 Gene

GeneLoc Exon Structure for
RNVU1-17
ECgene alternative splicing isoforms for
RNVU1-17

Expression for RNVU1-17 Gene

mRNA expression in normal human tissues for RNVU1-17 Gene

genes like me logo Genes that share expressions with RNVU1-17: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for RNVU1-17 Gene

Orthologs for RNVU1-17 Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNVU1-17 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U1 36
  • 91 (a)
OneToOne
cow
(Bos Taurus)
Mammalia U1 36
  • 92 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Gm23497 36
  • 75 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia U1 36
  • 90 (a)
ManyToMany
Species with no ortholog for RNVU1-17:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNVU1-17 Gene

ENSEMBL:
Gene Tree for RNVU1-17 (if available)
TreeFam:
Gene Tree for RNVU1-17 (if available)

Paralogs for RNVU1-17 Gene

No data available for Paralogs for RNVU1-17 Gene

Variants for RNVU1-17 Gene

Sequence variations from dbSNP and Humsavar for RNVU1-17 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type MAF
rs4950699 -- 143,700,880(+) gacca(C/G)ttttt upstream-variant-2KB
rs11583985 -- 143,700,138(+) ATTAC(A/G)AAGAA upstream-variant-2KB
rs12130247 -- 143,700,163(+) acata(C/T)ggtta upstream-variant-2KB
rs12753146 -- 143,699,440(+) TGCTT(A/T)TTGCA downstream-variant-500B
rs34056425 -- 143,698,970(-) CCGTT(-/G)GGGTT downstream-variant-500B

Relevant External Links for RNVU1-17 Gene

HapMap Linkage Disequilibrium report
RNVU1-17

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for RNVU1-17 Gene

Disorders for RNVU1-17 Gene

No disorders were found for RNVU1-17 Gene.

No data available for UniProtKB/Swiss-Prot for RNVU1-17 Gene

Publications for RNVU1-17 Gene

  1. Differentially expressed, variant U1 snRNAs regulate gene expression in human cells. (PMID: 23070852) O'Reilly D. … Murphy S. (Genome Res. 2013) 2 3

Products for RNVU1-17 Gene

Sources for RNVU1-17 Gene

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