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Aliases for RNVU1-17 Gene

Subcategory (RNA class) for RNVU1-17 Gene

snRNA

Quality Score for this RNA gene is

3

Aliases for RNVU1-17 Gene

  • RNA, Variant U1 Small Nuclear 17 2 3 5
  • RNU1-127 3
  • VU1.17 3

External Ids for RNVU1-17 Gene

ORGUL Members for RNVU1-17 Gene

Previous GeneCards Identifiers for RNVU1-17 Gene

  • GC01M149198

Summaries for RNVU1-17 Gene

GeneCards Summary for RNVU1-17 Gene

RNVU1-17 (RNA, Variant U1 Small Nuclear 17) is an RNA Gene, and is affiliated with the snRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNVU1-17 Gene

Genomics for RNVU1-17 Gene

Regulatory Elements for RNVU1-17 Gene

Enhancers for RNVU1-17 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F143699 0.8 ENCODE 0.8 -0.5 -537 0.8 POLR2A SPI1 GC01M143700 RNVU1-17 TRN-GTT22-1
GH01F143709 1.2 ENCODE 0.4 -9.9 -9949 0.2 ELF3 HDAC1 ATF1 ARID4B RAD21 ZNF2 ZNF143 CREM MIXL1 ZEB2 GC01M143700 RNVU1-17 TRN-GTT22-1
GH01F143710 0.4 ENCODE 0.4 -10.2 -10199 0.2 ELF3 HDAC1 ATF1 ARID4B ZNF2 RAD21 ZNF143 CREM MIXL1 ZNF654 TRN-GTT22-1 GC01M143700 RNVU1-17
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RNVU1-17 on UCSC Golden Path with GeneCards custom track

Genomic Location for RNVU1-17 Gene

Chromosome:
1
Start:
143,699,456 bp from pter
End:
143,699,619 bp from pter
Size:
164 bases
Orientation:
Minus strand

Genomic View for RNVU1-17 Gene

Genes around RNVU1-17 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNVU1-17 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNVU1-17 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNVU1-17 Gene

Proteins for RNVU1-17 Gene

Post-translational modifications for RNVU1-17 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNVU1-17 Gene

Domains & Families for RNVU1-17 Gene

Gene Families for RNVU1-17 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RNVU1-17: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNVU1-17 Gene

Function for RNVU1-17 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNVU1-17 Gene

Localization for RNVU1-17 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNVU1-17 Gene

Pathways & Interactions for RNVU1-17 Gene

SuperPathways for RNVU1-17 Gene

No Data Available

Interacting Proteins for RNVU1-17 Gene

Gene Ontology (GO) - Biological Process for RNVU1-17 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNVU1-17 Gene

Transcripts for RNVU1-17 Gene

mRNA/cDNA for RNVU1-17 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNVU1-17 Gene

No ASD Table

Relevant External Links for RNVU1-17 Gene

GeneLoc Exon Structure for
RNVU1-17
ECgene alternative splicing isoforms for
RNVU1-17

Expression for RNVU1-17 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNVU1-17 Gene

genes like me logo Genes that share expression patterns with RNVU1-17: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RNVU1-17 Gene

Orthologs for RNVU1-17 Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNVU1-17 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia U1 35
  • 92 (a)
OneToMany
chimpanzee
(Pan troglodytes)
Mammalia U1 35
  • 91 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia U1 35
  • 90 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm23497 35
  • 75 (a)
OneToOne
Species where no ortholog for RNVU1-17 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNVU1-17 Gene

ENSEMBL:
Gene Tree for RNVU1-17 (if available)
TreeFam:
Gene Tree for RNVU1-17 (if available)

Paralogs for RNVU1-17 Gene

No data available for Paralogs for RNVU1-17 Gene

Variants for RNVU1-17 Gene

Sequence variations from dbSNP and Humsavar for RNVU1-17 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs111362801 -- 143,700,534(+) TGGGG(A/T)AATTT upstream-variant-2KB
rs111618272 -- 143,700,348(+) TTTTC(A/G)AATAC upstream-variant-2KB
rs111715969 -- 143,701,220(+) GCAAA(G/T)GCAGT upstream-variant-2KB
rs112103584 -- 143,699,542(+) AACAC(A/T)TCCGG nc-transcript-variant
rs112314162 -- 143,699,551(+) GGAGT(A/G)CAATG nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for RNVU1-17 Gene

Variant ID Type Subtype PubMed ID
dgv20n111 CNV deletion 26073780
dgv21n111 CNV deletion 26073780
dgv22n111 CNV deletion 26073780
dgv35n27 CNV loss 19166990
dgv360n100 CNV loss 25217958
dgv371n100 CNV gain+loss 25217958
dgv372n100 CNV loss 25217958
dgv373n100 CNV gain 25217958
dgv374n100 CNV loss 25217958
dgv375n100 CNV gain+loss 25217958
dgv376n100 CNV loss 25217958
dgv377n100 CNV gain+loss 25217958
dgv378n100 CNV gain 25217958
dgv379n100 CNV loss 25217958
dgv380n100 CNV gain+loss 25217958
dgv381n100 CNV gain 25217958
dgv383n100 CNV loss 25217958
dgv384n100 CNV loss 25217958
dgv387n100 CNV gain 25217958
dgv389n100 CNV loss 25217958
dgv390n100 CNV loss 25217958
dgv392n100 CNV gain 25217958
dgv393n100 CNV gain 25217958
dgv395n100 CNV loss 25217958
dgv396n100 CNV loss 25217958
dgv397n100 CNV loss 25217958
dgv398n100 CNV loss 25217958
dgv3e213 CNV loss 24956385
dgv536n54 CNV gain 21841781
dgv538n54 CNV loss 21841781
dgv539n54 CNV loss 21841781
dgv540n54 CNV loss 21841781
dgv541n54 CNV gain+loss 21841781
dgv542n54 CNV loss 21841781
dgv543n54 CNV gain+loss 21841781
dgv545n54 CNV loss 21841781
dgv546n54 CNV gain 21841781
dgv548n54 CNV loss 21841781
dgv549n54 CNV loss 21841781
dgv550n54 CNV gain+loss 21841781
dgv553n54 CNV loss 21841781
dgv554n54 CNV loss 21841781
dgv556n54 CNV loss 21841781
dgv557n54 CNV loss 21841781
dgv558n54 CNV loss 21841781
dgv559n54 CNV loss 21841781
dgv560n54 CNV loss 21841781
dgv561n54 CNV loss 21841781
dgv562n54 CNV loss 21841781
esv21838 CNV gain+loss 19812545
esv2422083 OTHER complex 20811451
esv2750808 CNV gain 17911159
esv3584603 CNV loss 24956385
esv3584604 CNV loss 24956385
esv3584605 CNV loss 24956385
esv3587469 CNV loss 21293372
esv3587470 CNV gain 21293372
esv3894145 CNV gain+loss 25118596
esv3894156 CNV loss 25118596
esv3894189 CNV gain+loss 25118596
nsv1000674 CNV gain 25217958
nsv1005442 CNV loss 25217958
nsv1011871 CNV gain 25217958
nsv1012720 CNV gain 25217958
nsv1014796 CNV loss 25217958
nsv1118131 CNV deletion 24896259
nsv1161529 OTHER complex 26073780
nsv2766 CNV insertion 18451855
nsv433189 CNV loss 18776910
nsv441790 CNV gain+loss 18776908
nsv514006 CNV gain+loss 21397061
nsv547812 CNV loss 21841781
nsv818456 CNV gain+loss 17921354
nsv824520 CNV loss 20364138
nsv831481 CNV gain 17160897
nsv946357 CNV duplication 23825009
nsv952728 CNV deletion 24416366

Relevant External Links for RNVU1-17 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNVU1-17

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RNVU1-17 Gene

Disorders for RNVU1-17 Gene

No disorders were found for RNVU1-17 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNVU1-17 Gene

Publications for RNVU1-17 Gene

  1. Differentially expressed, variant U1 snRNAs regulate gene expression in human cells. (PMID: 23070852) O'Reilly D. … Murphy S. (Genome Res. 2013) 2 3 64

Products for RNVU1-17 Gene

Sources for RNVU1-17 Gene

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