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Aliases for RNVU1-15 Gene

Subcategory (RNA class) for RNVU1-15 Gene

snRNA

Quality Score for this RNA gene is

5

Aliases for RNVU1-15 Gene

  • RNA, Variant U1 Small Nuclear 15 2 3
  • RNA, Variant U1 Small Nuclear 16 2 3
  • RNU1-121 3
  • RNVU1-16 3
  • RNU1-66 3
  • VU1.15 3
  • VU1.16 3

External Ids for RNVU1-15 Gene

ORGUL Members for RNVU1-15 Gene

Previous HGNC Symbols for RNVU1-15 Gene

  • RNVU1-16

Previous GeneCards Identifiers for RNVU1-15 Gene

  • GC01M148606

Summaries for RNVU1-15 Gene

GeneCards Summary for RNVU1-15 Gene

RNVU1-15 (RNA, Variant U1 Small Nuclear 15) is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for RNVU1-15 Gene - the ORGUL cluster for this gene includes several descriptions:

  • U1_snRNA: U1 is a small nuclear RNA (snRNA) component of the spliceosome (involved in pre-mRNA splicing). Its 5' end forms complementary base pairs with the 5' splice junction, thus defining the 5' donor site of an intron. There are significant differences in sequence and secondary structure between metazoan and yeast U1 snRNAs, the latter being much longer (568 nucleotides as compared to 164 nucleotides in human). Nevertheless, secondary structure predictions suggest that all U1 snRNAs share a 'common core' consisting of helices I, II, the proximal region of III, and IV.

  • U1 spliceosomal RNA: U1 is a small nuclear RNA (snRNA) component of the spliceosome (involved in pre-mRNA splicing). Its 5' end forms complementary base pairs with the 5' splice junction, thus defining the 5' donor site of an intron. There are significant differences in sequence and secondary structure between metazoan and yeast U1 snRNAs, the latter being much longer (568 nucleotides as compared to 164 nucleotides in human). Nevertheless, secondary structure predictions suggest that all U1 snRNAs share a 'common core' consisting of helices I, II, the proximal region of III, and IV [1]. This family does not contain the larger yeast sequences.

  • U1 spliceosomal RNA: U1 is a small nuclear RNA (snRNA) component of the spliceosome (involved in pre-mRNA splicing). Its 5' end forms complementary base pairs with the 5' splice junction, thus defining the 5' donor site of an intron. There are significant differences in sequence and secondary structure between metazoan and yeast U1 snRNAs, the latter being much longer (568 nucleotides as compared to 164 nucleotides in human). Nevertheless, secondary structure predictions suggest that all U1 snRNAs share a 'common core' consisting of helices I, II, the proximal region of III, and IV [1]. This family does not contain the larger yeast sequences.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RNVU1-15 Gene

Genomics for RNVU1-15 Gene

Genomic Location for RNVU1-15 Gene

Start:
144,412,576 bp from pter
End:
144,412,740 bp from pter
Size:
165 bases
Orientation:
Plus strand

Genomic View for RNVU1-15 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RNVU1-15 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNVU1-15 Gene

ORGUL Member Location for RNVU1-15 Gene

ORGUL Member Location for RNVU1-15 gene

No data available for Regulatory Elements for RNVU1-15 Gene

Proteins for RNVU1-15 Gene

Post-translational modifications for RNVU1-15 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNVU1-15 Gene

Domains for RNVU1-15 Gene

Gene Families for RNVU1-15 Gene

HGNC:
  • snRNA :ncRNAs / Small nuclear RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RNVU1-15: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNVU1-15 Gene

Function for RNVU1-15 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for RNVU1-15 Gene

Localization for RNVU1-15 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNVU1-15 Gene

Pathways for RNVU1-15 Gene

SuperPathways for RNVU1-15 Gene

No Data Available

Interacting Proteins for RNVU1-15 Gene

Gene Ontology (GO) - Biological Process for RNVU1-15 Gene

None

No data available for Pathways by source for RNVU1-15 Gene

Transcripts for RNVU1-15 Gene

mRNA/cDNA for RNVU1-15 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNVU1-15 Gene

No ASD Table

Relevant External Links for RNVU1-15 Gene

GeneLoc Exon Structure for
RNVU1-15
ECgene alternative splicing isoforms for
RNVU1-15

Expression for RNVU1-15 Gene

mRNA expression in normal human tissues for RNVU1-15 Gene

genes like me logo Genes that share expressions with RNVU1-15: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for RNVU1-15 Gene

Orthologs for RNVU1-15 Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNVU1-15 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U1 36
  • 87 (a)
ManyToMany
cow
(Bos Taurus)
Mammalia U1 36
  • 89 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia U1 36
  • 89 (a)
ManyToMany
Species with no ortholog for RNVU1-15:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNVU1-15 Gene

ENSEMBL:
Gene Tree for RNVU1-15 (if available)
TreeFam:
Gene Tree for RNVU1-15 (if available)

Paralogs for RNVU1-15 Gene

No data available for Paralogs for RNVU1-15 Gene

Variants for RNVU1-15 Gene

Sequence variations from dbSNP and Humsavar for RNVU1-15 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type MAF
rs2671743 -- 144,412,905(+) CACTT(A/G)CTCTC downstream-variant-500B
rs2955136 -- 144,412,939(-) GTTGG(A/T)TGGGG downstream-variant-500B
rs5021578 -- 144,412,695(-) atgca(G/T)tcgag nc-transcript-variant
rs5021583 -- 144,412,731(-) ggaaa(A/G)cgcga nc-transcript-variant
rs7542217 -- 144,411,355(-) TGAGA(A/G)TGTAG upstream-variant-2KB

Relevant External Links for RNVU1-15 Gene

HapMap Linkage Disequilibrium report
RNVU1-15

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for RNVU1-15 Gene

Disorders for RNVU1-15 Gene

No disorders were found for RNVU1-15 Gene.

No data available for UniProtKB/Swiss-Prot for RNVU1-15 Gene

Publications for RNVU1-15 Gene

  1. Differentially expressed, variant U1 snRNAs regulate gene expression in human cells. (PMID: 23070852) O'Reilly D. … Murphy S. (Genome Res. 2013) 2 3

Products for RNVU1-15 Gene

Sources for RNVU1-15 Gene

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