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Aliases for RNU7-88P Gene

Subcategory (RNA class) for RNU7-88P Gene

snRNA

Aliases for RNU7-88P Gene

  • RNA, U7 Small Nuclear 88 Pseudogene 2 3 5

External Ids for RNU7-88P Gene

ORGUL Members for RNU7-88P Gene

Previous GeneCards Identifiers for RNU7-88P Gene

  • GC00U933406
  • GC13P060055

Summaries for RNU7-88P Gene

GeneCards Summary for RNU7-88P Gene

RNU7-88P (RNA, U7 Small Nuclear 88 Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

Additional gene information for RNU7-88P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU7-88P Gene

Genomics for RNU7-88P Gene

GeneHancer (GH) Regulatory Elements for RNU7-88P Gene

Promoters and enhancers for RNU7-88P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH13I059478 Enhancer 0.7 Ensembl ENCODE 550.8 +0.0 14 2.4 HIC1 ZFHX2 POU5F1 CTBP2 EZH2 ETS1 GC13P059481 RNU7-88P GC13M059528
GH13I059458 Enhancer 1.2 FANTOM5 Ensembl ENCODE dbSUPER 0.3 -20.8 -20768 1.6 CTCF JUND POLR2A JUN REST SPI1 RNU7-88P LOC105370224
GH13I059475 Enhancer 0.4 ENCODE 0.8 -3.7 -3717 1.3 CTCF ATF7 ATF2 RNU7-88P LOC105370224
GH13I059461 Enhancer 0.7 ENCODE 0.4 -18.4 -18385 0.9 JUN ETV1 TEAD4 TAL1 CHAMP1 TCF12 GATA2 NCOR1 EGR1 CBFA2T2 RNU7-88P LOC105370224
GH13I059447 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.3 -31.8 -31828 1.6 SP1 JUND USF1 POLR2A MAX POU5F1 RNU7-88P LOC105370224
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNU7-88P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU7-88P Gene

Genomic Locations for RNU7-88P Gene
chr13:59,480,070-59,480,132
(GRCh38/hg38)
Size:
63 bases
Orientation:
Plus strand
chr13:60,054,204-60,054,266
(GRCh37/hg19)

Genomic View for RNU7-88P Gene

Genes around RNU7-88P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU7-88P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU7-88P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU7-88P Gene

Proteins for RNU7-88P Gene

Post-translational modifications for RNU7-88P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU7-88P Gene

Domains & Families for RNU7-88P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU7-88P Gene

Function for RNU7-88P Gene

Phenotypes From GWAS Catalog for RNU7-88P Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU7-88P Gene

Localization for RNU7-88P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU7-88P Gene

Pathways & Interactions for RNU7-88P Gene

SuperPathways for RNU7-88P Gene

No Data Available

Interacting Proteins for RNU7-88P Gene

Gene Ontology (GO) - Biological Process for RNU7-88P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU7-88P Gene

Drugs & Compounds for RNU7-88P Gene

No Compound Related Data Available

Transcripts for RNU7-88P Gene

mRNA/cDNA for RNU7-88P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNU7-88P Gene

No ASD Table

Relevant External Links for RNU7-88P Gene

GeneLoc Exon Structure for
RNU7-88P
ECgene alternative splicing isoforms for
RNU7-88P

Expression for RNU7-88P Gene

NURSA nuclear receptor signaling pathways regulating expression of RNU7-88P Gene:

RNU7-88P
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU7-88P Gene

Orthologs for RNU7-88P Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for RNU7-88P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U7 34
  • 100 (a)
OneToOne
Species where no ortholog for RNU7-88P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU7-88P Gene

ENSEMBL:
Gene Tree for RNU7-88P (if available)
TreeFam:
Gene Tree for RNU7-88P (if available)

Paralogs for RNU7-88P Gene

No data available for Paralogs for RNU7-88P Gene

Variants for RNU7-88P Gene

Additional Variant Information for RNU7-88P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU7-88P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU7-88P Gene

Disorders for RNU7-88P Gene

No disorders were found for RNU7-88P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU7-88P Gene

Publications for RNU7-88P Gene

No publications were found for RNU7-88P Gene.

Products for RNU7-88P Gene

Sources for RNU7-88P Gene

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