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Aliases for RNU7-6P Gene

Subcategory (RNA class) for RNU7-6P Gene

snRNA

Aliases for RNU7-6P Gene

  • RNA, U7 Small Nuclear 6 Pseudogene 2 3 5
  • RNA, Small Nuclear U7.6 Pseudogene 3
  • U7.6 3

External Ids for RNU7-6P Gene

ORGUL Members for RNU7-6P Gene

Previous GeneCards Identifiers for RNU7-6P Gene

  • GC20U900319
  • GC20P050522
  • GC20P047268

Summaries for RNU7-6P Gene

GeneCards Summary for RNU7-6P Gene

RNU7-6P (RNA, U7 Small Nuclear 6 Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU7-6P Gene

Genomics for RNU7-6P Gene

Regulatory Elements for RNU7-6P Gene

Enhancers for RNU7-6P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH20F051797 1.7 FANTOM5 Ensembl ENCODE 10.7 -104.7 -104698 6.0 HDGF PKNOX1 ZFP64 ARID4B SIN3A DMAP1 FEZF1 YBX1 YY1 SLC30A9 SALL4 DPM1 PSMD10P1 RNU7-6P MOCS3 ATP9A ZFP64 PIR39254 GC20M051835
GH20F052046 1.2 Ensembl ENCODE 10.6 +143.1 143089 3.8 HDGF PKNOX1 SIN3A FEZF1 ZNF48 YY1 ELK1 FOS REST ZNF592 RNU7-6P LOC105372664 GC20M051958
GH20F051930 0.9 ENCODE 12.2 +26.3 26259 1.2 PKNOX1 INSM2 KLF17 ZBTB40 GTF3C2 ZNF366 POLR3A SCRT2 SMARCC1 CEBPB DPM1 RNU7-6P MOCS3 GC20M051940 SALL4
GH20F051934 0.9 Ensembl 12.2 +29.6 29632 0.4 PKNOX1 INSM2 KLF17 FEZF1 ZNF2 ZNF366 SMARCC2 KLF7 ZNF391 FOS RNU7-6P GC20M051940 SALL4
GH20F051847 1 ENCODE 10.9 -56.7 -56736 1.5 HDGF ATF1 PKNOX1 ARNT CREB3L1 ZFP64 ARID4B SIN3A ZNF48 SLC30A9 DPM1 RNU7-6P GC20M051835 LINC01429
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RNU7-6P on UCSC Golden Path with GeneCards custom track

Genomic Location for RNU7-6P Gene

Chromosome:
20
Start:
51,904,969 bp from pter
End:
51,905,030 bp from pter
Size:
62 bases
Orientation:
Plus strand

Genomic View for RNU7-6P Gene

Genes around RNU7-6P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU7-6P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU7-6P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU7-6P Gene

Proteins for RNU7-6P Gene

Post-translational modifications for RNU7-6P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU7-6P Gene

Domains & Families for RNU7-6P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU7-6P Gene

Function for RNU7-6P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU7-6P Gene

Localization for RNU7-6P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNU7-6P Gene

Pathways & Interactions for RNU7-6P Gene

SuperPathways for RNU7-6P Gene

No Data Available

Interacting Proteins for RNU7-6P Gene

Gene Ontology (GO) - Biological Process for RNU7-6P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU7-6P Gene

Transcripts for RNU7-6P Gene

mRNA/cDNA for RNU7-6P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU7-6P Gene

No ASD Table

Relevant External Links for RNU7-6P Gene

GeneLoc Exon Structure for
RNU7-6P
ECgene alternative splicing isoforms for
RNU7-6P

Expression for RNU7-6P Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RNU7-6P Gene

Orthologs for RNU7-6P Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for RNU7-6P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U7 35
  • 97 (a)
OneToOne
Species where no ortholog for RNU7-6P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU7-6P Gene

ENSEMBL:
Gene Tree for RNU7-6P (if available)
TreeFam:
Gene Tree for RNU7-6P (if available)

Paralogs for RNU7-6P Gene

No data available for Paralogs for RNU7-6P Gene

Variants for RNU7-6P Gene

Relevant External Links for RNU7-6P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU7-6P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU7-6P Gene

Disorders for RNU7-6P Gene

Relevant External Links for RNU7-6P

Genetic Association Database (GAD)
RNU7-6P

No disorders were found for RNU7-6P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RNU7-6P Gene

Publications for RNU7-6P Gene

  1. U7 snRNAs: a computational survey. (PMID: 18267300) Marz M. … Stadler P.F. (Genomics Proteomics Bioinformatics 2007) 2 3 64
  2. Genome-wide study of single-nucleotide polymorphisms associated with azoospermia and severe oligozoospermia. (PMID: 19478329) Aston K.I. … Carrell D.T. (J. Androl. 2009) 46 64

Products for RNU7-6P Gene

Sources for RNU7-6P Gene

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