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Aliases for RNU7-55P Gene

Subcategory (RNA class) for RNU7-55P Gene


Aliases for RNU7-55P Gene

  • RNA, U7 Small Nuclear 55 Pseudogene 2 3 5
  • RNA, Small Nuclear U7 Pseudogene 4 2 3
  • RNA, U7 Small Nuclear Pseudogene 4 3
  • HSU7.36 3
  • HSU7.55 3
  • RNU7P4 3
  • U7.55 3
  • U7 3

External Ids for RNU7-55P Gene

ORGUL Members for RNU7-55P Gene

Previous HGNC Symbols for RNU7-55P Gene

  • RNU7P4

Previous GeneCards Identifiers for RNU7-55P Gene

  • GC08M008968
  • GC08M007855

Summaries for RNU7-55P Gene

GeneCards Summary for RNU7-55P Gene

RNU7-55P (RNA, U7 Small Nuclear 55 Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for RNU7-55P Gene - the ORGUL cluster for this gene includes several descriptions:

  • snRNA: A small nuclear RNA molecule involved in pre-mRNA splicing and processing.

  • U7 small nuclear RNA: Animal histone pre-mRNAs are spliced by a different mechanism than nuclear pre-mRNAs and self-splicing introns. This processing involves the U7 snRNP, which contains only one RNA species: U7. The 5' end of U7 RNA is thought to base-pair to a conserved spacer element downstream of the cleavage site in histone pre-mRNA. This family contains a number of annotated U7 pseudogenes.

View fRNAdb secondary structures for RNU7-55P

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RNU7-55P Gene

Genomics for RNU7-55P Gene

Regulatory Elements for RNU7-55P Gene

Enhancers for RNU7-55P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08F009095 1.2 Ensembl ENCODE 12.3 -23.9 -23852 1.6 MLX ARID4B ZNF48 YY1 SLC30A9 SP5 MIER2 PPARG TBX21 KAT8 RNU7-55P RPL10P19 ENSG00000197334 ENSG00000254340
GH08F009099 1 Ensembl ENCODE 12.3 -30.9 -30914 7.5 PKNOX1 ARNT MLX ZFP64 FEZF1 YY1 FOS SP5 REST KAT8 FAM86B3P ERI1 RNU7-55P ENSG00000254340 ENSG00000253426 PPP1R3B PRAG1 RPL10P19 ENSG00000197334
GH08F009033 0.4 ENCODE 12.1 +38.2 38180 2.6 SREBF2 ARID4B SIN3A RAD21 ZNF48 HIC1 GLIS2 POLR2A SCRT2 ZNF600 ERI1 RNU7-55P RPL10P19 MIR4660 LOC105379227
GH08F009029 0.6 ENCODE 12.1 +42.5 42541 0.2 CTCF ZNF654 L3MBTL2 KLF17 TRIM22 REST RAD21 JUND ZNF143 SMC3 ERI1 RNU7-55P MIR4660 LOC105379227
GH08F009022 1 Ensembl ENCODE 12.1 +48.1 48083 4.3 PKNOX1 FEZF1 EBF1 RAD21 ZBTB40 ZFHX2 EGR2 ZNF362 CEBPB JUNB ERI1 RNU7-55P ENSG00000254340 ENSG00000253426 PPP1R3B RPL10P19 LOC105379227 MIR4660
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RNU7-55P on UCSC Golden Path with GeneCards custom track

Genomic Location for RNU7-55P Gene

9,072,455 bp from pter
9,072,516 bp from pter
62 bases
Minus strand

Genomic View for RNU7-55P Gene

Genes around RNU7-55P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU7-55P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU7-55P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU7-55P Gene

ORGUL Member Location for RNU7-55P Gene

ORGUL Member Location for RNU7-55P gene

Proteins for RNU7-55P Gene

Post-translational modifications for RNU7-55P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU7-55P Gene

Domains & Families for RNU7-55P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU7-55P Gene

Function for RNU7-55P Gene

Phenotypes for RNU7-55P Gene

GenomeRNAi human phenotypes for RNU7-55P:
genes like me logo Genes that share phenotypes with RNU7-55P: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU7-55P Gene

Localization for RNU7-55P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNU7-55P Gene

Pathways & Interactions for RNU7-55P Gene

SuperPathways for RNU7-55P Gene

No Data Available

Interacting Proteins for RNU7-55P Gene

Gene Ontology (GO) - Biological Process for RNU7-55P Gene


No data available for Pathways by source and SIGNOR curated interactions for RNU7-55P Gene

Transcripts for RNU7-55P Gene

fRNAdb Secondary structures for RNU7-55P Gene

  • RF00066;U7;M35540.1/229-290

mRNA/cDNA for RNU7-55P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU7-55P Gene

No ASD Table

Relevant External Links for RNU7-55P Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for RNU7-55P Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RNU7-55P Gene

Orthologs for RNU7-55P Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for RNU7-55P Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia U7 35
  • 98 (a)
Species where no ortholog for RNU7-55P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU7-55P Gene

Gene Tree for RNU7-55P (if available)
Gene Tree for RNU7-55P (if available)

Paralogs for RNU7-55P Gene

No data available for Paralogs for RNU7-55P Gene

Variants for RNU7-55P Gene

Relevant External Links for RNU7-55P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU7-55P Gene

Disorders for RNU7-55P Gene

Relevant External Links for RNU7-55P

Genetic Association Database (GAD)

No disorders were found for RNU7-55P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RNU7-55P Gene

Publications for RNU7-55P Gene

  1. U7 snRNAs: a computational survey. (PMID: 18267300) Marz M. … Stadler P.F. (Genomics Proteomics Bioinformatics 2007) 2 3 64
  2. Structures of four human pseudogenes for U7 small nuclear RNA. (PMID: 2249787) Soldati D. … SchA1mperli D. (Gene 1990) 2 3 64
  3. Genome-wide association with bone mass and geometry in the Framingham Heart Study. (PMID: 17903296) Kiel D.P. … Karasik D. (BMC Med. Genet. 2007) 46 64
  4. A genome-wide association study for blood lipid phenotypes in the Framingham Heart Study. (PMID: 17903299) Kathiresan S. … Cupples L.A. (BMC Med. Genet. 2007) 46 64
  5. 3' end processing of mouse histone pre-mRNA: evidence for additional base-pairing between U7 snRNA and pre-mRNA. (PMID: 7937126) Spycher C. … SchA1mperli D. (Nucleic Acids Res. 1994) 1

Products for RNU7-55P Gene

Sources for RNU7-55P Gene

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