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Aliases for RNU7-55P Gene

Subcategory (RNA class) for RNU7-55P Gene

snRNA

Aliases for RNU7-55P Gene

  • RNA, U7 Small Nuclear 55 Pseudogene 2 3 5
  • RNA, Small Nuclear U7 Pseudogene 4 2 3
  • RNA, U7 Small Nuclear Pseudogene 4 3
  • HSU7.36 3
  • HSU7.55 3
  • RNU7P4 3
  • U7.55 3
  • U7 3

External Ids for RNU7-55P Gene

ORGUL Members for RNU7-55P Gene

Previous HGNC Symbols for RNU7-55P Gene

  • RNU7P4

Previous GeneCards Identifiers for RNU7-55P Gene

  • GC08M008968
  • GC08M007855

Summaries for RNU7-55P Gene

GeneCards Summary for RNU7-55P Gene

RNU7-55P (RNA, U7 Small Nuclear 55 Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for RNU7-55P Gene - the ORGUL cluster for this gene includes several descriptions:

  • snRNA: A small nuclear RNA molecule involved in pre-mRNA splicing and processing.

  • U7 small nuclear RNA: Animal histone pre-mRNAs are spliced by a different mechanism than nuclear pre-mRNAs and self-splicing introns. This processing involves the U7 snRNP, which contains only one RNA species: U7. The 5' end of U7 RNA is thought to base-pair to a conserved spacer element downstream of the cleavage site in histone pre-mRNA. This family contains a number of annotated U7 pseudogenes.

View fRNAdb secondary structures for RNU7-55P

Additional gene information for RNU7-55P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RNU7-55P Gene

Genomics for RNU7-55P Gene

GeneHancer (GH) Regulatory Elements for RNU7-55P Gene

Promoters and enhancers for RNU7-55P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08I009070 Enhancer 0.7 Ensembl ENCODE dbSUPER 550.8 +1.5 1533 1.4 JUN RNU7-55P ERI1 ENSG00000254340 ENSG00000253426 PPP1R3B ENSG00000253252 MIR4660
GH08I009099 Enhancer 1.4 Ensembl ENCODE dbSUPER 12.3 -30.9 -30914 7.5 PKNOX1 FOXA2 MLX ZFP64 FEZF1 ZNF48 ETS1 YY1 TCF12 FOS FAM86B3P ERI1 RNU7-55P ENSG00000254340 ENSG00000253426 PPP1R3B PRAG1 RPL10P19 ENSG00000197334
GH08I009132 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 11.6 -62.9 -62872 5 IRF2 JUN RAD21 YY1 ZNF121 ZFHX2 POLR2A SCRT2 ZSCAN5C ZNF600 FAM86B3P RNU7-55P ENSG00000253252 ERI1 ENSG00000254340 PPP1R3B ENSG00000197334
GH08I009095 Enhancer 1.1 ENCODE dbSUPER 12.3 -23.9 -23852 1.6 FOXA2 MLX ARID4B ZNF48 YY1 TCF12 SLC30A9 ATF7 RXRA SP5 RNU7-55P RPL10P19 ENSG00000197334 ENSG00000254340 ERI1
GH08I008751 Enhancer 1.3 FANTOM5 Ensembl ENCODE 10.2 +319.1 319139 2.9 PKNOX1 ZBTB40 BATF IRF4 ATF7 ETV6 BCLAF1 IKZF2 RUNX3 CBFB FAM86B3P MFHAS1 CLDN23 ENSG00000207244 RPL10P19 RNU7-55P PRAG1 ENSG00000254367 ENSG00000284717
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNU7-55P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU7-55P Gene

Genomic Locations for RNU7-55P Gene
chr8:9,072,455-9,072,516
(GRCh38/hg38)
Size:
62 bases
Orientation:
Minus strand
chr8:8,929,965-8,930,026
(GRCh37/hg19)

Genomic View for RNU7-55P Gene

Genes around RNU7-55P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU7-55P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU7-55P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU7-55P Gene

ORGUL Member Location for RNU7-55P Gene

ORGUL Member Location for RNU7-55P gene

Proteins for RNU7-55P Gene

Post-translational modifications for RNU7-55P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU7-55P Gene

Domains & Families for RNU7-55P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU7-55P Gene

Function for RNU7-55P Gene

Phenotypes From GWAS Catalog for RNU7-55P Gene

Phenotypes for RNU7-55P Gene

GenomeRNAi human phenotypes for RNU7-55P:
genes like me logo Genes that share phenotypes with RNU7-55P: view

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU7-55P Gene

Localization for RNU7-55P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU7-55P Gene

Pathways & Interactions for RNU7-55P Gene

SuperPathways for RNU7-55P Gene

No Data Available

Interacting Proteins for RNU7-55P Gene

Gene Ontology (GO) - Biological Process for RNU7-55P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU7-55P Gene

Drugs & Compounds for RNU7-55P Gene

No Compound Related Data Available

Transcripts for RNU7-55P Gene

fRNAdb Secondary structures for RNU7-55P Gene

  • RF00066;U7;M35540.1/229-290

mRNA/cDNA for RNU7-55P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNU7-55P Gene

No ASD Table

Relevant External Links for RNU7-55P Gene

GeneLoc Exon Structure for
RNU7-55P
ECgene alternative splicing isoforms for
RNU7-55P

Expression for RNU7-55P Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU7-55P Gene

Orthologs for RNU7-55P Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for RNU7-55P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U7 34
  • 98 (a)
OneToOne
Species where no ortholog for RNU7-55P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU7-55P Gene

ENSEMBL:
Gene Tree for RNU7-55P (if available)
TreeFam:
Gene Tree for RNU7-55P (if available)

Paralogs for RNU7-55P Gene

No data available for Paralogs for RNU7-55P Gene

Variants for RNU7-55P Gene

Additional Variant Information for RNU7-55P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU7-55P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU7-55P Gene

Disorders for RNU7-55P Gene

Additional Disease Information for RNU7-55P

Genetic Association Database
(GAD)

No disorders were found for RNU7-55P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RNU7-55P Gene

Publications for RNU7-55P Gene

  1. U7 snRNAs: a computational survey. (PMID: 18267300) Marz M … Stadler PF (Genomics, proteomics & bioinformatics 2007) 2 3 58
  2. Structures of four human pseudogenes for U7 small nuclear RNA. (PMID: 2249787) Soldati D … Schümperli D (Gene 1990) 2 3 58
  3. Genome-wide association with bone mass and geometry in the Framingham Heart Study. (PMID: 17903296) Kiel DP … Karasik D (BMC medical genetics 2007) 44 58
  4. A genome-wide association study for blood lipid phenotypes in the Framingham Heart Study. (PMID: 17903299) Kathiresan S … Cupples LA (BMC medical genetics 2007) 44 58
  5. 3' end processing of mouse histone pre-mRNA: evidence for additional base-pairing between U7 snRNA and pre-mRNA. (PMID: 7937126) Spycher C … Schümperli D (Nucleic acids research 1994) 1

Products for RNU7-55P Gene

Sources for RNU7-55P Gene

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