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Aliases for RNU7-54P Gene

Aliases for RNU7-54P Gene

  • RNA, U7 Small Nuclear 54 Pseudogene 2 3 5
  • U7.54 3

External Ids for RNU7-54P Gene

Previous GeneCards Identifiers for RNU7-54P Gene

  • GC07U902238
  • GC07M128085
  • GC07M122444

Summaries for RNU7-54P Gene

GeneCards Summary for RNU7-54P Gene

RNU7-54P (RNA, U7 Small Nuclear 54 Pseudogene) is a Pseudogene.

Additional gene information for RNU7-54P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU7-54P Gene

Genomics for RNU7-54P Gene

GeneHancer (GH) Regulatory Elements for RNU7-54P Gene

Promoters and enhancers for RNU7-54P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07I128441 Enhancer 1.1 Ensembl ENCODE dbSUPER 550.8 -0.2 -188 3.7 EBF1 ZNF507 E2F1 CTBP1 GATA3 SCRT2 ZNF143 ATF7 FOS ZNF444 RNU7-54P METTL2B IMPDH1 ENSG00000242588 OPN1SW LOC102724660 GC07P128895
GH07I128422 Enhancer 0.8 ENCODE 12.4 +20.4 20390 1.7 HDAC1 FOXA2 NFIB ZSCAN4 ARID4B THRB RARA RFX5 POLR3A RCOR1 ENSG00000242588 ENSG00000230715 METTL2B ZNF800 ENSG00000243302 PRRT4 ENSG00000243679 HILPDA ENSG00000240758 RPS10P15
GH07I128420 Enhancer 0.5 ENCODE 12.4 +22.2 22179 1.3 ZFHX2 ZNF740 ZNF341 EGR2 GC07P128898 IMPDH1 METTL2B PRRT4 HILPDA ENSG00000240758 RNU7-54P ENSG00000242588 ENSG00000230715 GC07P128895
GH07I128446 Enhancer 0.7 ENCODE dbSUPER 0.8 -2.9 -2941 0.8 NFIC RCOR1 MNT CHD2 ZNF592 ENSG00000230715 ENSG00000272601 ENSG00000242588 LOC102724660 RNU7-54P GC07P128895
GH07I128445 Enhancer 0.5 ENCODE dbSUPER 0.8 -2.4 -2412 0.2 HLF METTL2B LOC102724660 RNU7-54P GC07P128895
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNU7-54P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU7-54P Gene

Genomic Locations for RNU7-54P Gene
chr7:128,443,449-128,443,510
(GRCh38/hg38)
Size:
62 bases
Orientation:
Minus strand
chr7:128,083,503-128,083,564
(GRCh37/hg19)

Genomic View for RNU7-54P Gene

Genes around RNU7-54P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU7-54P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU7-54P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU7-54P Gene

Proteins for RNU7-54P Gene

Post-translational modifications for RNU7-54P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU7-54P Gene

Domains & Families for RNU7-54P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU7-54P Gene

Function for RNU7-54P Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU7-54P Gene

Localization for RNU7-54P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU7-54P Gene

Pathways & Interactions for RNU7-54P Gene

SuperPathways for RNU7-54P Gene

No Data Available

Interacting Proteins for RNU7-54P Gene

Gene Ontology (GO) - Biological Process for RNU7-54P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU7-54P Gene

Drugs & Compounds for RNU7-54P Gene

No Compound Related Data Available

Transcripts for RNU7-54P Gene

mRNA/cDNA for RNU7-54P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNU7-54P Gene

No ASD Table

Relevant External Links for RNU7-54P Gene

GeneLoc Exon Structure for
RNU7-54P
ECgene alternative splicing isoforms for
RNU7-54P

Expression for RNU7-54P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU7-54P Gene

genes like me logo Genes that share expression patterns with RNU7-54P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU7-54P Gene

Orthologs for RNU7-54P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU7-54P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U7 34
  • 97 (a)
OneToOne
cow
(Bos Taurus)
Mammalia U7 34
  • 68 (a)
OneToMany
Species where no ortholog for RNU7-54P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU7-54P Gene

ENSEMBL:
Gene Tree for RNU7-54P (if available)
TreeFam:
Gene Tree for RNU7-54P (if available)

Paralogs for RNU7-54P Gene

No data available for Paralogs for RNU7-54P Gene

Variants for RNU7-54P Gene

Additional Variant Information for RNU7-54P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU7-54P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU7-54P Gene

Disorders for RNU7-54P Gene

No disorders were found for RNU7-54P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU7-54P Gene

Publications for RNU7-54P Gene

  1. U7 snRNAs: a computational survey. (PMID: 18267300) Marz M … Stadler PF (Genomics, proteomics & bioinformatics 2007) 2 3 58

Products for RNU7-54P Gene

Sources for RNU7-54P Gene

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