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Aliases for RNU7-3P Gene

Subcategory (RNA class) for RNU7-3P Gene

snRNA

Aliases for RNU7-3P Gene

  • RNA, U7 Small Nuclear 3 Pseudogene 2 3 5
  • RNA, Small Nuclear U7.3 Pseudogene 3
  • U7.3 3

External Ids for RNU7-3P Gene

ORGUL Members for RNU7-3P Gene

Previous GeneCards Identifiers for RNU7-3P Gene

  • GC06U901154
  • GC06P149838

Summaries for RNU7-3P Gene

GeneCards Summary for RNU7-3P Gene

RNU7-3P (RNA, U7 Small Nuclear 3 Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

Additional gene information for RNU7-3P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU7-3P Gene

Genomics for RNU7-3P Gene

GeneHancer (GH) Regulatory Elements for RNU7-3P Gene

Promoters and enhancers for RNU7-3P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I149517 Enhancer 0.8 ENCODE dbSUPER 550.8 +0.7 694 0.2 HDGF CTCF ZNF654 RB1 TRIM22 CEBPB CEBPG RAD21 CEBPA ZNF143 RNU7-3P GC06P149517 PPIL4 GC06P149237
GH06I149543 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 10.5 +28.6 28606 3.9 MLX DMAP1 YY1 ZNF213 E2F8 ZNF143 ZNF263 SP3 NFYC ZNF610 PPIL4 NUP43 LATS1 ENSG00000231760 KATNA1 GINM1 ENSG00000268592 RNU7-3P ENSG00000216906 GC06P149517
GH06I149029 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 10.9 -484.8 -484829 4.8 HDGF PKNOX1 FOXA2 SMAD1 ARID4B DMAP1 IRF4 YY1 ZNF143 ZNF207 LOC105378047 RNU7-3P PPIL4 UST-AS1 TAB2-AS1 ENSG00000202343 GINM1 TAB2 ZC3H12D SUMO4
GH06I149043 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 11.1 -471.3 -471280 4.2 PKNOX1 ATF1 SMAD1 RAD21 ZBTB40 YY1 CHAMP1 ZNF143 ATF7 ETV6 RNU7-3P PPIL4 LOC105378046 LOC105378047 UST
GH06I149058 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 10.3 -455.9 -455943 4.4 PKNOX1 FOXA2 SMAD1 ZFP64 ARID4B SIN3A FEZF1 ATF7 ZNF592 KAT8 LOC105378047 PPIL4 LATS1 RNU7-3P TAB2-AS1 TAB2 ZC3H12D LOC105378046 GC06M149112 UST
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNU7-3P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU7-3P Gene

Genomic Locations for RNU7-3P Gene
chr6:149,516,956-149,517,017
(GRCh38/hg38)
Size:
62 bases
Orientation:
Plus strand
chr6:149,838,092-149,838,153
(GRCh37/hg19)

Genomic View for RNU7-3P Gene

Genes around RNU7-3P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU7-3P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU7-3P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU7-3P Gene

Proteins for RNU7-3P Gene

Post-translational modifications for RNU7-3P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU7-3P Gene

Domains & Families for RNU7-3P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU7-3P Gene

Function for RNU7-3P Gene

Phenotypes From GWAS Catalog for RNU7-3P Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU7-3P Gene

Localization for RNU7-3P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU7-3P Gene

Pathways & Interactions for RNU7-3P Gene

SuperPathways for RNU7-3P Gene

No Data Available

Interacting Proteins for RNU7-3P Gene

Gene Ontology (GO) - Biological Process for RNU7-3P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU7-3P Gene

Drugs & Compounds for RNU7-3P Gene

No Compound Related Data Available

Transcripts for RNU7-3P Gene

mRNA/cDNA for RNU7-3P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNU7-3P Gene

No ASD Table

Relevant External Links for RNU7-3P Gene

GeneLoc Exon Structure for
RNU7-3P
ECgene alternative splicing isoforms for
RNU7-3P

Expression for RNU7-3P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU7-3P Gene

genes like me logo Genes that share expression patterns with RNU7-3P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU7-3P Gene

Orthologs for RNU7-3P Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for RNU7-3P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U7 34
  • 98 (a)
OneToOne
Species where no ortholog for RNU7-3P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU7-3P Gene

ENSEMBL:
Gene Tree for RNU7-3P (if available)
TreeFam:
Gene Tree for RNU7-3P (if available)

Paralogs for RNU7-3P Gene

No data available for Paralogs for RNU7-3P Gene

Variants for RNU7-3P Gene

Additional Variant Information for RNU7-3P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU7-3P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU7-3P Gene

Disorders for RNU7-3P Gene

No disorders were found for RNU7-3P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU7-3P Gene

Publications for RNU7-3P Gene

  1. U7 snRNAs: a computational survey. (PMID: 18267300) Marz M … Stadler PF (Genomics, proteomics & bioinformatics 2007) 2 3 58

Products for RNU7-3P Gene

Sources for RNU7-3P Gene

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